diff options
| author | wen <wen@FreeBSD.org> | 2009-11-18 13:33:10 +0800 |
|---|---|---|
| committer | wen <wen@FreeBSD.org> | 2009-11-18 13:33:10 +0800 |
| commit | f0a913c118f8af344eb332e961375a6c1dd50a41 (patch) | |
| tree | 8fa7a8af2e2fc0d90d059b54e9d859dae8fedfaa /biology | |
| parent | 1e6985ddfe715b57dbb59ac9d19208c7a5393fea (diff) | |
| download | freebsd-ports-gnome-f0a913c118f8af344eb332e961375a6c1dd50a41.tar.gz freebsd-ports-gnome-f0a913c118f8af344eb332e961375a6c1dd50a41.tar.zst freebsd-ports-gnome-f0a913c118f8af344eb332e961375a6c1dd50a41.zip | |
- Update to 21.1.1
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/fasta/Makefile | 3 | ||||
| -rw-r--r-- | biology/fasta/distinfo | 6 | ||||
| -rw-r--r-- | biology/fasta/files/patch-Makefile | 24 | ||||
| -rw-r--r-- | biology/fasta/pkg-plist | 13 |
4 files changed, 17 insertions, 29 deletions
diff --git a/biology/fasta/Makefile b/biology/fasta/Makefile index 8accb6a210c7..cd15d20c8b80 100644 --- a/biology/fasta/Makefile +++ b/biology/fasta/Makefile @@ -6,11 +6,10 @@ # PORTNAME= fasta -PORTVERSION= 21.u1.d1 +PORTVERSION= 21.1.1 CATEGORIES= biology MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta2/ \ ftp://ftp.ebi.ac.uk/pub/software/unix/fasta/fasta2/ -DISTNAME= fasta${PORTVERSION:S/.//g} EXTRACT_SUFX= .shar.Z MAINTAINER= ports@FreeBSD.org diff --git a/biology/fasta/distinfo b/biology/fasta/distinfo index ebee0667f707..68543bb5627d 100644 --- a/biology/fasta/distinfo +++ b/biology/fasta/distinfo @@ -1,3 +1,3 @@ -MD5 (fasta21u1d1.shar.Z) = f7fefbcf6b07e546eed1a1c6df98821e -SHA256 (fasta21u1d1.shar.Z) = 9b45ffb0ba7111f398f03fffd77d8c823ced6756461ec96428dc36d88d6777f3 -SIZE (fasta21u1d1.shar.Z) = 445052 +MD5 (fasta-21.1.1.shar.Z) = c584979d6ba0772e0705a98decd0f55d +SHA256 (fasta-21.1.1.shar.Z) = 553da3c5ef3a9e9e37784c2dcd77982b664f501e10b57ab8c4dcfe99c5039c82 +SIZE (fasta-21.1.1.shar.Z) = 461511 diff --git a/biology/fasta/files/patch-Makefile b/biology/fasta/files/patch-Makefile index e627085fbe70..1b9c6d33c5b8 100644 --- a/biology/fasta/files/patch-Makefile +++ b/biology/fasta/files/patch-Makefile @@ -1,16 +1,16 @@ ---- Makefile.orig Sun May 7 22:29:14 2006 -+++ Makefile Sun May 7 22:30:52 2006 +--- Makefile.orig 2009-11-17 21:32:40.000000000 +0800 ++++ Makefile 2009-11-17 21:33:55.000000000 +0800 @@ -2,14 +2,14 @@ # for SGI also use: -signed # --CC= cc -O -+#CC= cc -O - #CC=cc -g - #CC=insure -g +-CC= cc -O -g ++#CC= cc -O -g + #CC=cc -g -ansi -Wall + #CC= /usr/local/parasoft/bin.linux2/insure -g -DDEBUG --CFLAGS= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -+CFLAGS+= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN +-CFLAGS= -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN ++CFLAGS+= -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN LFLAGS= -lm -o -BIN = /seqprg/bin @@ -18,12 +18,12 @@ #NRAND= nrand #IBM RS/6000 #NRAND= nrand48 -@@ -29,7 +29,7 @@ - all : $(PROGS) +@@ -33,7 +33,7 @@ + all : $(WPROGS) install : -- cp $(PROGS) $(BIN) -+ $(BSD_INSTALL_PROGRAM) $(PROGS) $(BIN) +- cp $(WPROGS) $(BIN) ++ $(BSD_INSTALL_PROGRAM) $(WPROGS) $(BIN) clean-up : rm *.o $(PROGS) diff --git a/biology/fasta/pkg-plist b/biology/fasta/pkg-plist index 7c4d1df211c5..8e94a7e347eb 100644 --- a/biology/fasta/pkg-plist +++ b/biology/fasta/pkg-plist @@ -11,22 +11,11 @@ %%PORTDOCS%%%%DOCSDIR%%/readme.v20u5 %%PORTDOCS%%%%DOCSDIR%%/readme.v20u6 %%PORTDOCS%%%%DOCSDIR%%/readme.v21u0 -bin/aacomp bin/align bin/align0 -bin/bestscor -bin/crandseq -bin/flalign -bin/fromgb +bin/chofas bin/garnier -bin/grease bin/lalign -bin/lfasta bin/plalign -bin/plfasta bin/psgrease -bin/randseq -bin/relate -bin/revcomp -bin/tgrease %%PORTDOCS%%@dirrm %%DOCSDIR%% |