math/dynare: update 4.4.3 -> 4.5.1

PR:		221342
Relnotes:	https://forum.dynare.org/t/release-of-dynare-4-5-1/10431
Submitted by:	Fernando Apesteguia <fernando.apesteguia@gmail.com> (maintainer)

7 files changed, 518 insertions, 353 deletions

diff --git a/math/dynare/Makefile b/math/dynare/Makefile
index 916fd4670036..0bcc73ab4152 100644
--- a/math/dynare/Makefile
+++ b/math/dynare/Makefile
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	dynare
-PORTVERSION=	4.4.3
-PORTREVISION=	11
+PORTVERSION=	4.5.1
 CATEGORIES=	math
 MASTER_SITES=	http://www.dynare.org/release/source/
 
@@ -23,13 +22,12 @@ LIB_DEPENDS=	libumfpack.so:math/suitesparse \
 		libfftw3_threads.so:math/fftw3 \
 		libfftw3.so:math/fftw3 \
 		libfftw3f_threads.so:math/fftw3-float \
-		libfftw3f.so:math/fftw3-float \
-		liblapack.so:math/lapack \
-		libblas.so:math/blas
+		libfftw3f.so:math/fftw3-float
 
 WRKSRC=		${WRKDIR}/${DISTNAME}
 GNU_CONFIGURE=	yes
-USES=		fortran gmake pkgconfig tar:xz
+USES=		fortran gmake pkgconfig tar:xz shebangfix
+SHEBANG_FILES=	matlab/modules/reporting/success.sh
 
 INFO=		dynare
 
@@ -45,11 +43,6 @@ OCTAVE_BUILD_DEPENDS=		octave:math/octave
 CPPFLAGS+=	-I${LOCALBASE}/include
 LDFLAGS+=	-L${LOCALBASE}/lib
 
-pre-configure:
-# fix matio detection
-	${REINPLACE_CMD} 's,-lmatio .*$$LIBS,`pkgconf --libs matio`,' \
-		${WRKSRC}/configure ${WRKSRC}/mex/build/octave/configure
-
 post-configure:
 	@${ECHO_MSG} ""
 	@${ECHO_MSG} ""
@@ -60,4 +53,11 @@ post-configure:
 	@${ECHO_MSG} ""
 	@${ECHO_MSG} ""
 
-.include <bsd.port.mk>
+.include <bsd.port.pre.mk>
+
+post-install:
+.if ${ARCH} == "amd64"
+	${REINPLACE_CMD} -e 's|preprocessor32|preprocessor64|g' ${TMPPLIST}
+.endif
+
+.include <bsd.port.post.mk>
diff --git a/math/dynare/distinfo b/math/dynare/distinfo
index 63597e1036b8..4c4cc80602cc 100644
--- a/math/dynare/distinfo
+++ b/math/dynare/distinfo
@@ -1,2 +1,3 @@
-SHA256 (dynare-4.4.3.tar.xz) = d00f97f72bcad7486ec1d18640d44b607d91ff9f585c9b4e01d08b6a3deeae21
-SIZE (dynare-4.4.3.tar.xz) = 14982128
+TIMESTAMP = 1500906695
+SHA256 (dynare-4.5.1.tar.xz) = ae6a7e9cc62fb25b18db3d4b5c34c27c7af17a46cb73586d051a049b7108db1f
+SIZE (dynare-4.5.1.tar.xz) = 16068492
diff --git a/math/dynare/files/patch-Makefile.in b/math/dynare/files/patch-Makefile.in
index 6db62a80121f..b894472c46e0 100644
--- a/math/dynare/files/patch-Makefile.in
+++ b/math/dynare/files/patch-Makefile.in
@@ -1,14 +1,11 @@
---- Makefile.in.orig	2014-07-31 12:30:46 UTC
+--- Makefile.in.orig	2017-07-24 14:31:29 UTC
 +++ Makefile.in
-@@ -827,9 +827,9 @@ dist-hook:
- install-exec-local:
- 	$(MKDIR_P) $(DESTDIR)$(pkglibdir)/contrib/ms-sbvar/TZcode
- 	cp -r examples $(DESTDIR)$(pkglibdir)
--	cp -r matlab $(DESTDIR)$(pkglibdir)
- 	rm -f $(DESTDIR)$(pkglibdir)/matlab/dynare_m
--	cp preprocessor/dynare_m $(DESTDIR)$(pkglibdir)/matlab
-+	cp -r matlab $(DESTDIR)$(pkglibdir)
-+	$(INSTALL_PROGRAM) preprocessor/dynare_m $(DESTDIR)$(pkglibdir)/matlab
- 	cp -r contrib/ms-sbvar/TZcode/MatlabFiles $(DESTDIR)$(pkglibdir)/contrib/ms-sbvar/TZcode
+@@ -844,7 +844,7 @@ install-exec-local:
+ 	  ARCH="64"; \
+ 	fi; \
+ 	mkdir -p $(DESTDIR)$(pkglibdir)/matlab/preprocessor$$ARCH; \
+-	cp preprocessor/dynare_m $(DESTDIR)$(pkglibdir)/matlab/preprocessor$$ARCH; \
++	$(INSTALL_PROGRAM) preprocessor/dynare_m $(DESTDIR)$(pkglibdir)/matlab/preprocessor$$ARCH; \
+ 	}
  
  uninstall-local:
diff --git a/math/dynare/files/patch-dynare++_kord_journal.cweb b/math/dynare/files/patch-dynare++_kord_journal.cweb
index 084946197a47..2d697d9ee904 100644
--- a/math/dynare/files/patch-dynare++_kord_journal.cweb
+++ b/math/dynare/files/patch-dynare++_kord_journal.cweb
@@ -1,4 +1,4 @@
---- dynare++/kord/journal.cweb.orig	2013-11-08 16:37:59 UTC
+--- dynare++/kord/journal.cweb.orig	2017-07-24 09:58:59 UTC
 +++ dynare++/kord/journal.cweb
 @@ -5,6 +5,8 @@
  @c
@@ -38,7 +38,7 @@
  	gettimeofday(&now, NULL);
  	elapsed = now.tv_sec-start.tv_sec + (now.tv_usec-start.tv_usec)*1.0e-6;
  
-@@ -107,7 +122,11 @@ void SystemResources::getRUS(double& loa
+@@ -111,7 +126,11 @@ void SystemResources::getRUS(double& loa
  	load_avg = -1.0;
  #endif
  
diff --git a/math/dynare/files/patch-dynare++_parser_cc_parser__exception.h b/math/dynare/files/patch-dynare++_parser_cc_parser__exception.h
index 03374438410f..cf6d2b707e45 100644
--- a/math/dynare/files/patch-dynare++_parser_cc_parser__exception.h
+++ b/math/dynare/files/patch-dynare++_parser_cc_parser__exception.h
@@ -1,4 +1,4 @@
---- dynare++/parser/cc/parser_exception.h.orig	2013-11-08 16:37:59 UTC
+--- dynare++/parser/cc/parser_exception.h.orig	2017-07-24 09:58:59 UTC
 +++ dynare++/parser/cc/parser_exception.h
 @@ -6,6 +6,7 @@
  #define OG_FORMULA_PARSER_H
@@ -6,5 +6,5 @@
  #include <string>
 +#include <stdio.h>
  
- namespace ogp {
- 	using std::string;
+ namespace ogp
+ {
diff --git a/math/dynare/files/patch-mex_build_octave_configure b/math/dynare/files/patch-mex_build_octave_configure
index 60ea228e4121..3b384d669e78 100644
--- a/math/dynare/files/patch-mex_build_octave_configure
+++ b/math/dynare/files/patch-mex_build_octave_configure
@@ -1,6 +1,6 @@
---- mex/build/octave/configure.orig	2014-07-31 12:31:10 UTC
+--- mex/build/octave/configure.orig	2017-07-24 14:31:27 UTC
 +++ mex/build/octave/configure
-@@ -7076,7 +7076,7 @@ if ${ac_cv_lib_umfpack_umfpack_dl_defaul
+@@ -7202,7 +7202,7 @@ if ${ac_cv_lib_umfpack_umfpack_dl_defaul
    $as_echo_n "(cached) " >&6
  else
    ac_check_lib_save_LIBS=$LIBS
diff --git a/math/dynare/pkg-plist b/math/dynare/pkg-plist
index 3050fcb46bc2..0ff4bed70c2a 100644
--- a/math/dynare/pkg-plist
+++ b/math/dynare/pkg-plist
@@ -1,4 +1,5 @@
 bin/dynare++
+info/dir
 lib/dynare/contrib/ms-sbvar/TZcode/MatlabFiles/a0asfun.m
 lib/dynare/contrib/ms-sbvar/TZcode/MatlabFiles/a0asgrad.m
 lib/dynare/contrib/ms-sbvar/TZcode/MatlabFiles/a0freefun.m
@@ -243,7 +244,10 @@ lib/dynare/examples/NK_baseline.mod
 lib/dynare/examples/NK_baseline_steadystate.m
 lib/dynare/examples/agtrend.mod
 lib/dynare/examples/bkk.mod
+lib/dynare/examples/dynare++/README.txt
+lib/dynare/examples/dynare++/example1.mod
 lib/dynare/examples/example1.mod
+lib/dynare/examples/example1_reporting.mod
 lib/dynare/examples/example2.mod
 lib/dynare/examples/example3.mod
 lib/dynare/examples/example3_steady_state_helper.m
@@ -251,92 +255,6 @@ lib/dynare/examples/fs2000.mod
 lib/dynare/examples/fs2000_nonstationary.mod
 lib/dynare/examples/fsdat_simul.m
 lib/dynare/examples/ramst.mod
-lib/dynare/matlab/.dir-locals.el
-lib/dynare/matlab/@dates/append.m
-lib/dynare/matlab/@dates/colon.m
-lib/dynare/matlab/@dates/dates.m
-lib/dynare/matlab/@dates/disp.m
-lib/dynare/matlab/@dates/display.m
-lib/dynare/matlab/@dates/double.m
-lib/dynare/matlab/@dates/end.m
-lib/dynare/matlab/@dates/eq.m
-lib/dynare/matlab/@dates/ge.m
-lib/dynare/matlab/@dates/gt.m
-lib/dynare/matlab/@dates/horzcat.m
-lib/dynare/matlab/@dates/intersect.m
-lib/dynare/matlab/@dates/isempty.m
-lib/dynare/matlab/@dates/isequal.m
-lib/dynare/matlab/@dates/le.m
-lib/dynare/matlab/@dates/length.m
-lib/dynare/matlab/@dates/lt.m
-lib/dynare/matlab/@dates/max.m
-lib/dynare/matlab/@dates/min.m
-lib/dynare/matlab/@dates/minus.m
-lib/dynare/matlab/@dates/mtimes.m
-lib/dynare/matlab/@dates/ne.m
-lib/dynare/matlab/@dates/plus.m
-lib/dynare/matlab/@dates/pop.m
-lib/dynare/matlab/@dates/setdiff.m
-lib/dynare/matlab/@dates/size.m
-lib/dynare/matlab/@dates/sort.m
-lib/dynare/matlab/@dates/strings.m
-lib/dynare/matlab/@dates/subsasgn.m
-lib/dynare/matlab/@dates/subsref.m
-lib/dynare/matlab/@dates/uminus.m
-lib/dynare/matlab/@dates/union.m
-lib/dynare/matlab/@dates/unique.m
-lib/dynare/matlab/@dates/uplus.m
-lib/dynare/matlab/@dates/vertcat.m
-lib/dynare/matlab/@dseries/align.m
-lib/dynare/matlab/@dseries/baxter_king_filter.m
-lib/dynare/matlab/@dseries/check.m
-lib/dynare/matlab/@dseries/cumsum.m
-lib/dynare/matlab/@dseries/disp.m
-lib/dynare/matlab/@dseries/display.m
-lib/dynare/matlab/@dseries/dseries.m
-lib/dynare/matlab/@dseries/eq.m
-lib/dynare/matlab/@dseries/exp.m
-lib/dynare/matlab/@dseries/extract.m
-lib/dynare/matlab/@dseries/horzcat.m
-lib/dynare/matlab/@dseries/hpcycle.m
-lib/dynare/matlab/@dseries/hptrend.m
-lib/dynare/matlab/@dseries/insert.m
-lib/dynare/matlab/@dseries/isempty.m
-lib/dynare/matlab/@dseries/isequal.m
-lib/dynare/matlab/@dseries/lag.m
-lib/dynare/matlab/@dseries/lead.m
-lib/dynare/matlab/@dseries/log.m
-lib/dynare/matlab/@dseries/merge.m
-lib/dynare/matlab/@dseries/minus.m
-lib/dynare/matlab/@dseries/mpower.m
-lib/dynare/matlab/@dseries/mrdivide.m
-lib/dynare/matlab/@dseries/mtimes.m
-lib/dynare/matlab/@dseries/ne.m
-lib/dynare/matlab/@dseries/numel.m
-lib/dynare/matlab/@dseries/plot.m
-lib/dynare/matlab/@dseries/plus.m
-lib/dynare/matlab/@dseries/pop.m
-lib/dynare/matlab/@dseries/private/default_name.m
-lib/dynare/matlab/@dseries/qdiff.m
-lib/dynare/matlab/@dseries/qgrowth.m
-lib/dynare/matlab/@dseries/rename.m
-lib/dynare/matlab/@dseries/save.m
-lib/dynare/matlab/@dseries/set_names.m
-lib/dynare/matlab/@dseries/size.m
-lib/dynare/matlab/@dseries/subsasgn.m
-lib/dynare/matlab/@dseries/subsref.m
-lib/dynare/matlab/@dseries/tex_rename.m
-lib/dynare/matlab/@dseries/uminus.m
-lib/dynare/matlab/@dseries/vertcat.m
-lib/dynare/matlab/@dseries/ydiff.m
-lib/dynare/matlab/@dseries/ygrowth.m
-lib/dynare/matlab/@dynTimeIndex/display.m
-lib/dynare/matlab/@dynTimeIndex/dynTimeIndex.m
-lib/dynare/matlab/@dynTimeIndex/minus.m
-lib/dynare/matlab/@dynTimeIndex/mpower.m
-lib/dynare/matlab/@dynTimeIndex/plus.m
-lib/dynare/matlab/@dynTimeIndex/subsasgn.m
-lib/dynare/matlab/@dynTimeIndex/subsref.m
 lib/dynare/matlab/AHessian.m
 lib/dynare/matlab/AIM/README.txt
 lib/dynare/matlab/AIM/SPAimerr.m
@@ -352,7 +270,6 @@ lib/dynare/matlab/AIM/SPShiftright.m
 lib/dynare/matlab/AIM/dynAIMsolver1.m
 lib/dynare/matlab/AIM_first_order_solver.m
 lib/dynare/matlab/CheckPath.m
-lib/dynare/matlab/Contents.m
 lib/dynare/matlab/CutSample.m
 lib/dynare/matlab/DsgeSmoother.m
 lib/dynare/matlab/GetAllPosteriorDraws.m
@@ -360,21 +277,21 @@ lib/dynare/matlab/GetOneDraw.m
 lib/dynare/matlab/GetPosteriorMeanVariance.m
 lib/dynare/matlab/GetPosteriorParametersStatistics.m
 lib/dynare/matlab/MakeAllFigures.m
-lib/dynare/matlab/McMCDiagnostics.m
-lib/dynare/matlab/McMCDiagnostics_core.m
 lib/dynare/matlab/PlotPosteriorDistributions.m
-lib/dynare/matlab/PosteriorFilterSmootherAndForecast.m
 lib/dynare/matlab/PosteriorIRF.m
 lib/dynare/matlab/PosteriorIRF_core1.m
 lib/dynare/matlab/PosteriorIRF_core2.m
 lib/dynare/matlab/ReshapeMatFiles.m
+lib/dynare/matlab/TaRB_optimizer_wrapper.m
 lib/dynare/matlab/Tracing.m
 lib/dynare/matlab/UnivariateSpectralDensity.m
-lib/dynare/matlab/adaptive_metropolis_hastings.m
-lib/dynare/matlab/add_auxiliary_variables_to_steadystate.m
+lib/dynare/matlab/WriteShockDecomp2Excel.m
+lib/dynare/matlab/add_filter_subtitle.m
+lib/dynare/matlab/add_path_to_mex_files.m
+lib/dynare/matlab/annualized_shock_decomposition.m
 lib/dynare/matlab/autoregressive_process_specification.m
+lib/dynare/matlab/backward_model_inversion.m
 lib/dynare/matlab/basic_plan.m
-lib/dynare/matlab/bfgsi1.m
 lib/dynare/matlab/bicgstab_.m
 lib/dynare/matlab/bksup0.m
 lib/dynare/matlab/bksup1.m
@@ -388,39 +305,50 @@ lib/dynare/matlab/bvar_irf.m
 lib/dynare/matlab/bvar_toolbox.m
 lib/dynare/matlab/bytecode_steadystate.m
 lib/dynare/matlab/cartesian_product_of_sets.m
+lib/dynare/matlab/cellofchar2mfile.m
 lib/dynare/matlab/check.m
 lib/dynare/matlab/check_consistency_covariances.m
 lib/dynare/matlab/check_dsge_var_model.m
-lib/dynare/matlab/check_file_extension.m
 lib/dynare/matlab/check_for_calibrated_covariances.m
 lib/dynare/matlab/check_list_of_variables.m
+lib/dynare/matlab/check_matlab_path.m
 lib/dynare/matlab/check_model.m
 lib/dynare/matlab/check_name.m
 lib/dynare/matlab/check_posterior_analysis_data.m
+lib/dynare/matlab/check_posterior_sampler_options.m
 lib/dynare/matlab/check_prior_analysis_data.m
 lib/dynare/matlab/check_prior_bounds.m
-lib/dynare/matlab/cmaes.m
-lib/dynare/matlab/common_strings_in_cell_arrays.m
+lib/dynare/matlab/check_valid_ver.m
+lib/dynare/matlab/chol_SE.m
+lib/dynare/matlab/clear_persistent_variables.m
+lib/dynare/matlab/cli/prior.m
+lib/dynare/matlab/collect_latex_files.m
+lib/dynare/matlab/compute_Pinf_Pstar.m
 lib/dynare/matlab/compute_mh_covariance_matrix.m
 lib/dynare/matlab/compute_model_moments.m
 lib/dynare/matlab/compute_moments_varendo.m
 lib/dynare/matlab/compute_overall_acceptance_ratio.m
+lib/dynare/matlab/compute_trend_coefficients.m
 lib/dynare/matlab/conditional_variance_decomposition.m
 lib/dynare/matlab/conditional_variance_decomposition_mc_analysis.m
+lib/dynare/matlab/convergence_diagnostics/McMCDiagnostics.m
+lib/dynare/matlab/convergence_diagnostics/McMCDiagnostics_core.m
+lib/dynare/matlab/convergence_diagnostics/geweke_chi2_test.m
+lib/dynare/matlab/convergence_diagnostics/geweke_moments.m
+lib/dynare/matlab/convergence_diagnostics/mcmc_ifac.m
+lib/dynare/matlab/convergence_diagnostics/raftery_lewis.m
 lib/dynare/matlab/convertAimCodeToInfo.m
+lib/dynare/matlab/convert_dyn_45_to_44.m
+lib/dynare/matlab/convert_oo_.m
 lib/dynare/matlab/correlation_mc_analysis.m
 lib/dynare/matlab/cosn.m
 lib/dynare/matlab/covariance_mc_analysis.m
-lib/dynare/matlab/csminit1.m
-lib/dynare/matlab/csminwel1.m
 lib/dynare/matlab/csolve.m
 lib/dynare/matlab/cubature_with_gaussian_weight.m
 lib/dynare/matlab/cycle_reduction.m
 lib/dynare/matlab/datatomfile.m
 lib/dynare/matlab/dcompare.m
 lib/dynare/matlab/delete_mh_history_files.m
-lib/dynare/matlab/det_cond_forecast.m
-lib/dynare/matlab/det_forecast.m
 lib/dynare/matlab/discretionary_policy.m
 lib/dynare/matlab/discretionary_policy_1.m
 lib/dynare/matlab/discretionary_policy_engine.m
@@ -432,9 +360,13 @@ lib/dynare/matlab/disp_steady_state.m
 lib/dynare/matlab/disp_th_moments.m
 lib/dynare/matlab/display_conditional_variance_decomposition.m
 lib/dynare/matlab/display_estimation_results_table.m
+lib/dynare/matlab/display_problematic_vars_Jacobian.m
+lib/dynare/matlab/distributions/beta_specification.m
 lib/dynare/matlab/distributions/compute_prior_mode.m
+lib/dynare/matlab/distributions/gamma_specification.m
 lib/dynare/matlab/distributions/ig1fun.m
 lib/dynare/matlab/distributions/inverse_gamma_specification.m
+lib/dynare/matlab/distributions/lpdfgweibull.m
 lib/dynare/matlab/distributions/mode_and_variance_to_mean.m
 lib/dynare/matlab/distributions/multivariate_normal_pdf.m
 lib/dynare/matlab/distributions/multivariate_student_pdf.m
@@ -442,6 +374,7 @@ lib/dynare/matlab/distributions/rand_inverse_wishart.m
 lib/dynare/matlab/distributions/rand_matrix_normal.m
 lib/dynare/matlab/distributions/rand_multivariate_normal.m
 lib/dynare/matlab/distributions/rand_multivariate_student.m
+lib/dynare/matlab/distributions/weibull_specification.m
 lib/dynare/matlab/do_parameter_initialization.m
 lib/dynare/matlab/dr_block.m
 lib/dynare/matlab/draw_prior_density.m
@@ -452,13 +385,14 @@ lib/dynare/matlab/dsge_simulated_theoretical_correlation.m
 lib/dynare/matlab/dsge_simulated_theoretical_covariance.m
 lib/dynare/matlab/dsge_simulated_theoretical_variance_decomposition.m
 lib/dynare/matlab/dsge_var_likelihood.m
-lib/dynare/matlab/dsgevar_posterior_density.m
 lib/dynare/matlab/dy_date.m
 lib/dynare/matlab/dyn2vec.m
+lib/dynare/matlab/dyn_autocorr.m
 lib/dynare/matlab/dyn_diag_vech.m
 lib/dynare/matlab/dyn_figure.m
 lib/dynare/matlab/dyn_first_order_solver.m
 lib/dynare/matlab/dyn_forecast.m
+lib/dynare/matlab/dyn_latex_table.m
 lib/dynare/matlab/dyn_ramsey_static.m
 lib/dynare/matlab/dyn_risky_steadystate_solver.m
 lib/dynare/matlab/dyn_saveas.m
@@ -467,6 +401,8 @@ lib/dynare/matlab/dyn_unvech.m
 lib/dynare/matlab/dyn_vech.m
 lib/dynare/matlab/dyn_waitbar.m
 lib/dynare/matlab/dyn_waitbar_close.m
+lib/dynare/matlab/dynamic_backward_model_for_inversion.m
+lib/dynare/matlab/dynamic_backward_model_for_simulation.m
 lib/dynare/matlab/dynare.m
 lib/dynare/matlab/dynare_config.m
 lib/dynare/matlab/dynare_estimation.m
@@ -491,13 +427,26 @@ lib/dynare/matlab/dynsec2hms.m
 lib/dynare/matlab/dyntable.m
 lib/dynare/matlab/endogenous_prior.m
 lib/dynare/matlab/endogenous_prior_restrictions.m
+lib/dynare/matlab/ep/ep_accuracy_check.m
+lib/dynare/matlab/ep/ep_notes.org
+lib/dynare/matlab/ep/ep_problem_2.m
+lib/dynare/matlab/ep/euler_equation_error.m
 lib/dynare/matlab/ep/extended_path.m
-lib/dynare/matlab/ep/homotopic_steps.m
+lib/dynare/matlab/ep/extended_path_core.m
+lib/dynare/matlab/ep/extended_path_homotopy.m
+lib/dynare/matlab/ep/extended_path_initialization.m
+lib/dynare/matlab/ep/extended_path_mc.m
+lib/dynare/matlab/ep/extended_path_shocks.m
+lib/dynare/matlab/ep/get_block_world_nbr.m
+lib/dynare/matlab/ep/setup_integration_nodes.m
+lib/dynare/matlab/ep/setup_stochastic_perfect_foresight_model_solver.m
 lib/dynare/matlab/ep/solve_stochastic_perfect_foresight_model.m
 lib/dynare/matlab/ep/solve_stochastic_perfect_foresight_model_1.m
 lib/dynare/matlab/ep_residuals.m
 lib/dynare/matlab/erase_compiled_function.m
+lib/dynare/matlab/evaluate_dynamic_model.m
 lib/dynare/matlab/evaluate_likelihood.m
+lib/dynare/matlab/evaluate_max_dynamic_residual.m
 lib/dynare/matlab/evaluate_planner_objective.m
 lib/dynare/matlab/evaluate_posterior_kernel.m
 lib/dynare/matlab/evaluate_prior.m
@@ -505,6 +454,8 @@ lib/dynare/matlab/evaluate_smoother.m
 lib/dynare/matlab/evaluate_static_model.m
 lib/dynare/matlab/evaluate_steady_state.m
 lib/dynare/matlab/evaluate_steady_state_file.m
+lib/dynare/matlab/execute_prior_posterior_function.m
+lib/dynare/matlab/expand_group.m
 lib/dynare/matlab/f_var.m
 lib/dynare/matlab/fastgensylv.m
 lib/dynare/matlab/ff1_.m
@@ -514,13 +465,14 @@ lib/dynare/matlab/flip_plan.m
 lib/dynare/matlab/forcst.m
 lib/dynare/matlab/forcst2.m
 lib/dynare/matlab/forcst2a.m
-lib/dynare/matlab/forcst_unc.m
 lib/dynare/matlab/forecast_graphs.m
 lib/dynare/matlab/formdata.m
 lib/dynare/matlab/ftest.m
+lib/dynare/matlab/fwriten.m
 lib/dynare/matlab/gauss_hermite_weights_and_nodes.m
 lib/dynare/matlab/gauss_legendre_weights_and_nodes.m
 lib/dynare/matlab/gcompare.m
+lib/dynare/matlab/generate_trace_plots.m
 lib/dynare/matlab/gensylv/gensylv.m
 lib/dynare/matlab/gensylv/sylvester3.m
 lib/dynare/matlab/gensylv/sylvester3a.m
@@ -535,23 +487,20 @@ lib/dynare/matlab/get_cells_id.m
 lib/dynare/matlab/get_date_of_a_file.m
 lib/dynare/matlab/get_dynare_random_generator_state.m
 lib/dynare/matlab/get_existing_subsamples_indx.m
+lib/dynare/matlab/get_file_extension.m
 lib/dynare/matlab/get_moments_size.m
 lib/dynare/matlab/get_name_of_the_last_mh_file.m
 lib/dynare/matlab/get_new_or_existing_ei_index.m
 lib/dynare/matlab/get_optimal_policy_discount_factor.m
 lib/dynare/matlab/get_param_by_name.m
 lib/dynare/matlab/get_posterior_parameters.m
-lib/dynare/matlab/get_prior_info.m
-lib/dynare/matlab/get_random_string.m
 lib/dynare/matlab/get_subsamples_range_indx.m
 lib/dynare/matlab/get_the_name.m
 lib/dynare/matlab/get_variables_list.m
 lib/dynare/matlab/get_variance_of_endogenous_variables.m
-lib/dynare/matlab/geweke_chi2_test.m
-lib/dynare/matlab/geweke_moments.m
 lib/dynare/matlab/global_initialization.m
-lib/dynare/matlab/gmhmaxlik.m
 lib/dynare/matlab/graph_decomp.m
+lib/dynare/matlab/graph_decomp_detail.m
 lib/dynare/matlab/gsa/Morris_Measure_Groups.m
 lib/dynare/matlab/gsa/Sampling_Function_2.m
 lib/dynare/matlab/gsa/cumplot.m
@@ -561,15 +510,22 @@ lib/dynare/matlab/gsa/gsa_plotmatrix.m
 lib/dynare/matlab/gsa/gsa_skewness.m
 lib/dynare/matlab/gsa/gsa_speed.m
 lib/dynare/matlab/gsa/log_trans_.m
+lib/dynare/matlab/gsa/map_calibration.m
 lib/dynare/matlab/gsa/map_ident_.m
 lib/dynare/matlab/gsa/mc_moments.m
+lib/dynare/matlab/gsa/mcf_analysis.m
 lib/dynare/matlab/gsa/myboxplot.m
 lib/dynare/matlab/gsa/myprctilecol.m
+lib/dynare/matlab/gsa/pick.m
 lib/dynare/matlab/gsa/prior_draw_gsa.m
 lib/dynare/matlab/gsa/priorcdf.m
 lib/dynare/matlab/gsa/read_data.m
 lib/dynare/matlab/gsa/redform_map.m
 lib/dynare/matlab/gsa/redform_screen.m
+lib/dynare/matlab/gsa/scatter_analysis.m
+lib/dynare/matlab/gsa/scatter_callback.m
+lib/dynare/matlab/gsa/scatter_mcf.m
+lib/dynare/matlab/gsa/scatter_plots.m
 lib/dynare/matlab/gsa/set_shocks_param.m
 lib/dynare/matlab/gsa/smirnov.m
 lib/dynare/matlab/gsa/stab_map_.m
@@ -583,6 +539,7 @@ lib/dynare/matlab/gsa/trank.m
 lib/dynare/matlab/hess_element.m
 lib/dynare/matlab/hessian.m
 lib/dynare/matlab/hessian_sparse.m
+lib/dynare/matlab/histvalf.m
 lib/dynare/matlab/homotopy1.m
 lib/dynare/matlab/homotopy2.m
 lib/dynare/matlab/homotopy3.m
@@ -590,20 +547,20 @@ lib/dynare/matlab/ident_bruteforce.m
 lib/dynare/matlab/identification_analysis.m
 lib/dynare/matlab/identification_checks.m
 lib/dynare/matlab/imcforecast.m
-lib/dynare/matlab/independent_metropolis_hastings.m
-lib/dynare/matlab/independent_metropolis_hastings_core.m
 lib/dynare/matlab/indnv.m
 lib/dynare/matlab/init_plan.m
+lib/dynare/matlab/initial_condition_decomposition.m
 lib/dynare/matlab/initial_estimation_checks.m
 lib/dynare/matlab/initialize_from_mode.m
 lib/dynare/matlab/initvalf.m
-lib/dynare/matlab/insert_column_vector_in_a_matrix.m
-lib/dynare/matlab/insert_object_in_a_one_dimensional_cell_array.m
 lib/dynare/matlab/internals.m
+lib/dynare/matlab/interpret_resol_info.m
 lib/dynare/matlab/irf.m
+lib/dynare/matlab/isbayes.m
+lib/dynare/matlab/isoctave.m
+lib/dynare/matlab/isolder.m
 lib/dynare/matlab/jacob_element.m
 lib/dynare/matlab/k_order_pert.m
-lib/dynare/matlab/k_order_perturbation.m
 lib/dynare/matlab/kalman/build_selection_matrix.m
 lib/dynare/matlab/kalman/likelihood/computeDLIK.m
 lib/dynare/matlab/kalman/likelihood/kalman_filter.m
@@ -622,16 +579,20 @@ lib/dynare/matlab/kalman_transition_matrix.m
 lib/dynare/matlab/kernel_density_estimate.m
 lib/dynare/matlab/kronecker/A_times_B_kronecker_C.m
 lib/dynare/matlab/kronecker/sparse_hessian_times_B_kronecker_C.m
+lib/dynare/matlab/list_of_functions_to_be_cleared.m
 lib/dynare/matlab/list_of_parameters_calibrated_as_NaN.m
+lib/dynare/matlab/lmmcp/catstruct.m
+lib/dynare/matlab/lmmcp/dyn_lmmcp.m
+lib/dynare/matlab/lmmcp/dyn_lmmcp_func.m
+lib/dynare/matlab/lmmcp/get_complementarity_conditions.m
+lib/dynare/matlab/lmmcp/lmmcp.m
 lib/dynare/matlab/lnsrch1.m
 lib/dynare/matlab/lnsrch1_wrapper_one_boundary.m
 lib/dynare/matlab/lnsrch1_wrapper_two_boundaries.m
-lib/dynare/matlab/load_csv_file_data.m
 lib/dynare/matlab/load_first_mh_history_file.m
 lib/dynare/matlab/load_last_mh_history_file.m
-lib/dynare/matlab/load_m_file_data.m
-lib/dynare/matlab/load_mat_file_data.m
-lib/dynare/matlab/load_xls_file_data.m
+lib/dynare/matlab/load_m_file_data_legacy.m
+lib/dynare/matlab/load_mat_file_data_legacy.m
 lib/dynare/matlab/logarithmic_reduction.m
 lib/dynare/matlab/long_run_variance.m
 lib/dynare/matlab/lpdfgam.m
@@ -639,22 +600,28 @@ lib/dynare/matlab/lpdfgbeta.m
 lib/dynare/matlab/lpdfig1.m
 lib/dynare/matlab/lpdfig2.m
 lib/dynare/matlab/lpdfnorm.m
+lib/dynare/matlab/lyapunov_solver.m
 lib/dynare/matlab/lyapunov_symm.m
-lib/dynare/matlab/make_ex_.m
-lib/dynare/matlab/make_y_.m
 lib/dynare/matlab/marginal_density.m
 lib/dynare/matlab/matlab_ver_less_than.m
 lib/dynare/matlab/maximize_prior_density.m
 lib/dynare/matlab/mcforecast3.m
 lib/dynare/matlab/mcompare.m
+lib/dynare/matlab/mcp_func.m
+lib/dynare/matlab/mcpath_function.m
 lib/dynare/matlab/metropolis_draw.m
 lib/dynare/matlab/metropolis_hastings_initialization.m
 lib/dynare/matlab/metropolis_run_analysis.m
+lib/dynare/matlab/mex/k_order_perturbation.m
+lib/dynare/matlab/mex/qmc_sequence.m
 lib/dynare/matlab/mexErrCheck.m
 lib/dynare/matlab/mh_autocorrelation_function.m
 lib/dynare/matlab/mh_optimal_bandwidth.m
 lib/dynare/matlab/minus_logged_prior_density.m
-lib/dynare/matlab/missing/bsxfun/bsxfun.m
+lib/dynare/matlab/missing/corrcoef/corrcoef.m
+lib/dynare/matlab/missing/corrcoef/flag_implicit_skip_nan.m
+lib/dynare/matlab/missing/corrcoef/sumskipnan.m
+lib/dynare/matlab/missing/corrcoef/tcdf.m
 lib/dynare/matlab/missing/ilu/ilu.m
 lib/dynare/matlab/missing/issquare/issquare.m
 lib/dynare/matlab/missing/nanmean/nanmean.m
@@ -668,6 +635,7 @@ lib/dynare/matlab/missing/stats/betarnd.m
 lib/dynare/matlab/missing/stats/chi2cdf.m
 lib/dynare/matlab/missing/stats/chi2inv.m
 lib/dynare/matlab/missing/stats/common_size.m
+lib/dynare/matlab/missing/stats/corr.m
 lib/dynare/matlab/missing/stats/exprnd.m
 lib/dynare/matlab/missing/stats/gamcdf.m
 lib/dynare/matlab/missing/stats/gaminv.m
@@ -676,10 +644,14 @@ lib/dynare/matlab/missing/stats/gamrnd.m
 lib/dynare/matlab/missing/stats/normcdf.m
 lib/dynare/matlab/missing/stats/norminv.m
 lib/dynare/matlab/missing/stats/normpdf.m
+lib/dynare/matlab/missing/stats/quantile.m
 lib/dynare/matlab/missing/stats/stdnormal_cdf.m
 lib/dynare/matlab/missing/stats/stdnormal_inv.m
 lib/dynare/matlab/missing/stats/stdnormal_pdf.m
-lib/dynare/matlab/missing/strjoin/strjoin.m
+lib/dynare/matlab/missing/stats/wblcdf.m
+lib/dynare/matlab/missing/stats/wblinv.m
+lib/dynare/matlab/missing/stats/wblrnd.m
+lib/dynare/matlab/missing/struct2array/struct2array.m
 lib/dynare/matlab/missing/vec/vec.m
 lib/dynare/matlab/missing_DiffuseKalmanSmootherH1_Z.m
 lib/dynare/matlab/missing_DiffuseKalmanSmootherH3_Z.m
@@ -687,10 +659,251 @@ lib/dynare/matlab/mode_check.m
 lib/dynare/matlab/model_comparison.m
 lib/dynare/matlab/model_diagnostics.m
 lib/dynare/matlab/model_info.m
+lib/dynare/matlab/model_inversion.m
+lib/dynare/matlab/modules/dates/README.md
+lib/dynare/matlab/modules/dates/src/@dates/append.m
+lib/dynare/matlab/modules/dates/src/@dates/char.m
+lib/dynare/matlab/modules/dates/src/@dates/colon.m
+lib/dynare/matlab/modules/dates/src/@dates/dates.m
+lib/dynare/matlab/modules/dates/src/@dates/disp.m
+lib/dynare/matlab/modules/dates/src/@dates/display.m
+lib/dynare/matlab/modules/dates/src/@dates/double.m
+lib/dynare/matlab/modules/dates/src/@dates/end.m
+lib/dynare/matlab/modules/dates/src/@dates/eq.m
+lib/dynare/matlab/modules/dates/src/@dates/ge.m
+lib/dynare/matlab/modules/dates/src/@dates/gt.m
+lib/dynare/matlab/modules/dates/src/@dates/horzcat.m
+lib/dynare/matlab/modules/dates/src/@dates/intersect.m
+lib/dynare/matlab/modules/dates/src/@dates/isempty.m
+lib/dynare/matlab/modules/dates/src/@dates/isequal.m
+lib/dynare/matlab/modules/dates/src/@dates/le.m
+lib/dynare/matlab/modules/dates/src/@dates/length.m
+lib/dynare/matlab/modules/dates/src/@dates/lt.m
+lib/dynare/matlab/modules/dates/src/@dates/max.m
+lib/dynare/matlab/modules/dates/src/@dates/min.m
+lib/dynare/matlab/modules/dates/src/@dates/minus.m
+lib/dynare/matlab/modules/dates/src/@dates/mtimes.m
+lib/dynare/matlab/modules/dates/src/@dates/ne.m
+lib/dynare/matlab/modules/dates/src/@dates/plus.m
+lib/dynare/matlab/modules/dates/src/@dates/pop.m
+lib/dynare/matlab/modules/dates/src/@dates/setdiff.m
+lib/dynare/matlab/modules/dates/src/@dates/size.m
+lib/dynare/matlab/modules/dates/src/@dates/sort.m
+lib/dynare/matlab/modules/dates/src/@dates/strings.m
+lib/dynare/matlab/modules/dates/src/@dates/subsasgn.m
+lib/dynare/matlab/modules/dates/src/@dates/subsref.m
+lib/dynare/matlab/modules/dates/src/@dates/uminus.m
+lib/dynare/matlab/modules/dates/src/@dates/union.m
+lib/dynare/matlab/modules/dates/src/@dates/unique.m
+lib/dynare/matlab/modules/dates/src/@dates/uplus.m
+lib/dynare/matlab/modules/dates/src/@dates/vertcat.m
+lib/dynare/matlab/modules/dates/src/initialize_dates_toolbox.m
+lib/dynare/matlab/modules/dates/src/utilities/convert/date2string.m
+lib/dynare/matlab/modules/dates/src/utilities/convert/freq2string.m
+lib/dynare/matlab/modules/dates/src/utilities/convert/string2date.m
+lib/dynare/matlab/modules/dates/src/utilities/convert/string2freq.m
+lib/dynare/matlab/modules/dates/src/utilities/is/isdate.m
+lib/dynare/matlab/modules/dates/src/utilities/is/isdates.m
+lib/dynare/matlab/modules/dates/src/utilities/is/isfreq.m
+lib/dynare/matlab/modules/dates/src/utilities/is/ismonthly.m
+lib/dynare/matlab/modules/dates/src/utilities/is/isquaterly.m
+lib/dynare/matlab/modules/dates/src/utilities/is/isstringdate.m
+lib/dynare/matlab/modules/dates/src/utilities/is/issubperiod.m
+lib/dynare/matlab/modules/dates/src/utilities/is/isweekly.m
+lib/dynare/matlab/modules/dates/src/utilities/is/isyearly.m
+lib/dynare/matlab/modules/dates/src/utilities/missing/dims/columns.m
+lib/dynare/matlab/modules/dates/src/utilities/missing/dims/rows.m
+lib/dynare/matlab/modules/dates/src/utilities/missing/isint/isint.m
+lib/dynare/matlab/modules/dates/src/utilities/missing/isoctave/isoctave.m
+lib/dynare/matlab/modules/dates/src/utilities/missing/matlab_ver_less_than/matlab_ver_less_than.m
+lib/dynare/matlab/modules/dates/src/utilities/missing/shiftS/shiftS.m
+lib/dynare/matlab/modules/dates/src/utilities/op/add_periods_to_array_of_dates.m
+lib/dynare/matlab/modules/dates/src/utilities/op/add_periods_to_date.m
+lib/dynare/matlab/modules/dseries/README.md
+lib/dynare/matlab/modules/dseries/src/@dseries/abs.m
+lib/dynare/matlab/modules/dseries/src/@dseries/align.m
+lib/dynare/matlab/modules/dseries/src/@dseries/baxter_king_filter.m
+lib/dynare/matlab/modules/dseries/src/@dseries/center.m
+lib/dynare/matlab/modules/dseries/src/@dseries/chain.m
+lib/dynare/matlab/modules/dseries/src/@dseries/check.m
+lib/dynare/matlab/modules/dseries/src/@dseries/cumprod.m
+lib/dynare/matlab/modules/dseries/src/@dseries/cumsum.m
+lib/dynare/matlab/modules/dseries/src/@dseries/detrend.m
+lib/dynare/matlab/modules/dseries/src/@dseries/disp.m
+lib/dynare/matlab/modules/dseries/src/@dseries/display.m
+lib/dynare/matlab/modules/dseries/src/@dseries/dseries.m
+lib/dynare/matlab/modules/dseries/src/@dseries/end.m
+lib/dynare/matlab/modules/dseries/src/@dseries/eq.m
+lib/dynare/matlab/modules/dseries/src/@dseries/exist.m
+lib/dynare/matlab/modules/dseries/src/@dseries/exp.m
+lib/dynare/matlab/modules/dseries/src/@dseries/extract.m
+lib/dynare/matlab/modules/dseries/src/@dseries/firstdate.m
+lib/dynare/matlab/modules/dseries/src/@dseries/firstobservedperiod.m
+lib/dynare/matlab/modules/dseries/src/@dseries/frequency.m
+lib/dynare/matlab/modules/dseries/src/@dseries/horzcat.m
+lib/dynare/matlab/modules/dseries/src/@dseries/hpcycle.m
+lib/dynare/matlab/modules/dseries/src/@dseries/hptrend.m
+lib/dynare/matlab/modules/dseries/src/@dseries/insert.m
+lib/dynare/matlab/modules/dseries/src/@dseries/isempty.m
+lib/dynare/matlab/modules/dseries/src/@dseries/isequal.m
+lib/dynare/matlab/modules/dseries/src/@dseries/isnan.m
+lib/dynare/matlab/modules/dseries/src/@dseries/lag.m
+lib/dynare/matlab/modules/dseries/src/@dseries/lastdate.m
+lib/dynare/matlab/modules/dseries/src/@dseries/lastobservedperiod.m
+lib/dynare/matlab/modules/dseries/src/@dseries/lead.m
+lib/dynare/matlab/modules/dseries/src/@dseries/log.m
+lib/dynare/matlab/modules/dseries/src/@dseries/mean.m
+lib/dynare/matlab/modules/dseries/src/@dseries/merge.m
+lib/dynare/matlab/modules/dseries/src/@dseries/minus.m
+lib/dynare/matlab/modules/dseries/src/@dseries/mpower.m
+lib/dynare/matlab/modules/dseries/src/@dseries/mrdivide.m
+lib/dynare/matlab/modules/dseries/src/@dseries/mtimes.m
+lib/dynare/matlab/modules/dseries/src/@dseries/ne.m
+lib/dynare/matlab/modules/dseries/src/@dseries/nobs.m
+lib/dynare/matlab/modules/dseries/src/@dseries/numel.m
+lib/dynare/matlab/modules/dseries/src/@dseries/plot.m
+lib/dynare/matlab/modules/dseries/src/@dseries/plus.m
+lib/dynare/matlab/modules/dseries/src/@dseries/pop.m
+lib/dynare/matlab/modules/dseries/src/@dseries/private/default_name.m
+lib/dynare/matlab/modules/dseries/src/@dseries/qdiff.m
+lib/dynare/matlab/modules/dseries/src/@dseries/qgrowth.m
+lib/dynare/matlab/modules/dseries/src/@dseries/remove.m
+lib/dynare/matlab/modules/dseries/src/@dseries/rename.m
+lib/dynare/matlab/modules/dseries/src/@dseries/save.m
+lib/dynare/matlab/modules/dseries/src/@dseries/set_names.m
+lib/dynare/matlab/modules/dseries/src/@dseries/size.m
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+lib/dynare/matlab/modules/dseries/src/@dseries/uminus.m
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+lib/dynare/matlab/modules/dseries/src/@dseries/vobs.m
+lib/dynare/matlab/modules/dseries/src/@dseries/ydiff.m
+lib/dynare/matlab/modules/dseries/src/@dseries/ygrowth.m
+lib/dynare/matlab/modules/dseries/src/initialize_dseries_toolbox.m
+lib/dynare/matlab/modules/dseries/src/read/load_csv_file_data.m
+lib/dynare/matlab/modules/dseries/src/read/load_m_file_data.m
+lib/dynare/matlab/modules/dseries/src/read/load_mat_file_data.m
+lib/dynare/matlab/modules/dseries/src/read/load_xls_file_data.m
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+lib/dynare/matlab/modules/dseries/src/utilities/file/check_file_extension.m
+lib/dynare/matlab/modules/dseries/src/utilities/from/from.m
+lib/dynare/matlab/modules/dseries/src/utilities/insert/insert_column_vector_in_a_matrix.m
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+lib/dynare/matlab/modules/dseries/src/utilities/is/iscellofchar.m
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+lib/dynare/matlab/modules/dseries/src/utilities/missing/ndim/ndim.m
+lib/dynare/matlab/modules/dseries/src/utilities/missing/sample_hp_filter/sample_hp_filter.m
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+lib/dynare/matlab/modules/dseries/src/utilities/str/get_random_string.m
+lib/dynare/matlab/modules/dseries/src/utilities/str/name2tex.m
+lib/dynare/matlab/modules/dseries/src/utilities/variables/build_list_of_variables_with_loops.m
+lib/dynare/matlab/modules/dseries/src/utilities/variables/build_list_of_variables_with_regexp.m
+lib/dynare/matlab/modules/dseries/tests/runalldseriestests.m
+lib/dynare/matlab/modules/reporting/.travis.yml
+lib/dynare/matlab/modules/reporting/Makefile
+lib/dynare/matlab/modules/reporting/README.md
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+lib/dynare/matlab/modules/reporting/src/@page/addSection.m
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+lib/dynare/matlab/modules/reporting/src/@report/report.m
+lib/dynare/matlab/modules/reporting/src/@report/subsasgn.m
+lib/dynare/matlab/modules/reporting/src/@report/subsref.m
+lib/dynare/matlab/modules/reporting/src/@report/write.m
+lib/dynare/matlab/modules/reporting/src/@report_series/display.m
+lib/dynare/matlab/modules/reporting/src/@report_series/getNameForLegend.m
+lib/dynare/matlab/modules/reporting/src/@report_series/getRange.m
+lib/dynare/matlab/modules/reporting/src/@report_series/getTexName.m
+lib/dynare/matlab/modules/reporting/src/@report_series/isZero.m
+lib/dynare/matlab/modules/reporting/src/@report_series/printSeries.m
+lib/dynare/matlab/modules/reporting/src/@report_series/report_series.m
+lib/dynare/matlab/modules/reporting/src/@report_series/setDataToZeroFromZeroTol.m
+lib/dynare/matlab/modules/reporting/src/@report_series/subsasgn.m
+lib/dynare/matlab/modules/reporting/src/@report_series/subsref.m
+lib/dynare/matlab/modules/reporting/src/@report_series/writeSeriesForGraph.m
+lib/dynare/matlab/modules/reporting/src/@report_series/writeSeriesForTable.m
+lib/dynare/matlab/modules/reporting/src/@report_series/ymax.m
+lib/dynare/matlab/modules/reporting/src/@report_series/ymin.m
+lib/dynare/matlab/modules/reporting/src/@report_table/addSeries.m
+lib/dynare/matlab/modules/reporting/src/@report_table/display.m
+lib/dynare/matlab/modules/reporting/src/@report_table/report_table.m
+lib/dynare/matlab/modules/reporting/src/@report_table/subsasgn.m
+lib/dynare/matlab/modules/reporting/src/@report_table/subsref.m
+lib/dynare/matlab/modules/reporting/src/@report_table/write.m
+lib/dynare/matlab/modules/reporting/src/@report_table/writeTableFile.m
+lib/dynare/matlab/modules/reporting/src/@section/addGraph.m
+lib/dynare/matlab/modules/reporting/src/@section/addParagraph.m
+lib/dynare/matlab/modules/reporting/src/@section/addTable.m
+lib/dynare/matlab/modules/reporting/src/@section/addVspace.m
+lib/dynare/matlab/modules/reporting/src/@section/display.m
+lib/dynare/matlab/modules/reporting/src/@section/end.m
+lib/dynare/matlab/modules/reporting/src/@section/numElements.m
+lib/dynare/matlab/modules/reporting/src/@section/section.m
+lib/dynare/matlab/modules/reporting/src/@section/subsasgn.m
+lib/dynare/matlab/modules/reporting/src/@section/subsref.m
+lib/dynare/matlab/modules/reporting/src/@section/write.m
+lib/dynare/matlab/modules/reporting/src/@vspace/display.m
+lib/dynare/matlab/modules/reporting/src/@vspace/subsasgn.m
+lib/dynare/matlab/modules/reporting/src/@vspace/subsref.m
+lib/dynare/matlab/modules/reporting/src/@vspace/vspace.m
+lib/dynare/matlab/modules/reporting/src/@vspace/write.m
+lib/dynare/matlab/modules/reporting/src/addCommasToCellStr.m
+lib/dynare/matlab/modules/reporting/src/allCellsAreDates.m
+lib/dynare/matlab/modules/reporting/src/allCellsAreDatesRange.m
+lib/dynare/matlab/modules/reporting/src/areParensNext.m
+lib/dynare/matlab/modules/reporting/src/display_reporting_object.m
+lib/dynare/matlab/modules/reporting/src/getMaxRange.m
+lib/dynare/matlab/modules/reporting/success.sh
+lib/dynare/matlab/modules/reporting/test/AnnualTable.m
+lib/dynare/matlab/modules/reporting/test/CommResidTablePage.m
+lib/dynare/matlab/modules/reporting/test/CountryGraphPage.m
+lib/dynare/matlab/modules/reporting/test/CountryTablePage.m
+lib/dynare/matlab/modules/reporting/test/ResidTablePage.m
+lib/dynare/matlab/modules/reporting/test/createReport.m
+lib/dynare/matlab/modules/reporting/test/db_a.csv
+lib/dynare/matlab/modules/reporting/test/db_q.csv
+lib/dynare/matlab/modules/reporting/test/dc_a.csv
+lib/dynare/matlab/modules/reporting/test/dc_q.csv
+lib/dynare/matlab/modules/reporting/test/runtest.m
 lib/dynare/matlab/moment_function.m
 lib/dynare/matlab/moments.m
-lib/dynare/matlab/mr_gstep.m
-lib/dynare/matlab/mr_hessian.m
 lib/dynare/matlab/ms-sbvar/check_datafile_years_assigned.m
 lib/dynare/matlab/ms-sbvar/clean_files_for_second_type_of_mex.m
 lib/dynare/matlab/ms-sbvar/clean_ms_estimation_files.m
@@ -736,20 +949,40 @@ lib/dynare/matlab/ms-sbvar/sbvar.m
 lib/dynare/matlab/ms-sbvar/set_file_tags.m
 lib/dynare/matlab/ms-sbvar/set_ms_estimation_file.m
 lib/dynare/matlab/ms-sbvar/set_ms_simulation_file.m
+lib/dynare/matlab/ms-sbvar/svar_global_identification_check.m
 lib/dynare/matlab/mult_elimination.m
 lib/dynare/matlab/multivariate_sample_autocovariance.m
 lib/dynare/matlab/my_subplot.m
 lib/dynare/matlab/myboxplot.m
 lib/dynare/matlab/mydelete.m
 lib/dynare/matlab/name2index.m
-lib/dynare/matlab/newrat.m
 lib/dynare/matlab/non_linear_dsge_likelihood.m
-lib/dynare/matlab/numgrad2.m
-lib/dynare/matlab/numgrad3.m
-lib/dynare/matlab/numgrad3_.m
-lib/dynare/matlab/numgrad5.m
-lib/dynare/matlab/numgrad5_.m
 lib/dynare/matlab/octave_ver_less_than.m
+lib/dynare/matlab/one_sided_hp_filter.m
+lib/dynare/matlab/optimization/apprgrdn.m
+lib/dynare/matlab/optimization/bfgsi1.m
+lib/dynare/matlab/optimization/cmaes.m
+lib/dynare/matlab/optimization/csminit1.m
+lib/dynare/matlab/optimization/csminwel1.m
+lib/dynare/matlab/optimization/dynare_minimize_objective.m
+lib/dynare/matlab/optimization/gmhmaxlik.m
+lib/dynare/matlab/optimization/gmhmaxlik_core.m
+lib/dynare/matlab/optimization/mr_gstep.m
+lib/dynare/matlab/optimization/mr_hessian.m
+lib/dynare/matlab/optimization/newrat.m
+lib/dynare/matlab/optimization/numgrad2.m
+lib/dynare/matlab/optimization/numgrad3.m
+lib/dynare/matlab/optimization/numgrad3_.m
+lib/dynare/matlab/optimization/numgrad5.m
+lib/dynare/matlab/optimization/numgrad5_.m
+lib/dynare/matlab/optimization/penalty_objective_function.m
+lib/dynare/matlab/optimization/simplex_optimization_routine.m
+lib/dynare/matlab/optimization/simpsa.m
+lib/dynare/matlab/optimization/simpsaget.m
+lib/dynare/matlab/optimization/simpsaset.m
+lib/dynare/matlab/optimization/simulated_annealing.m
+lib/dynare/matlab/optimization/solvopt.m
+lib/dynare/matlab/optimize_prior.m
 lib/dynare/matlab/options2cell.m
 lib/dynare/matlab/osr.m
 lib/dynare/matlab/osr1.m
@@ -782,50 +1015,86 @@ lib/dynare/matlab/partial_information/PCL_Part_info_moments.m
 lib/dynare/matlab/partial_information/PCL_resol.m
 lib/dynare/matlab/partial_information/PI_gensys.m
 lib/dynare/matlab/partial_information/PI_gensys_singularC.m
+lib/dynare/matlab/partial_information/add_auxiliary_variables_to_steadystate.m
 lib/dynare/matlab/partial_information/disc_riccati_fast.m
 lib/dynare/matlab/partial_information/disclyap_fast.m
 lib/dynare/matlab/partial_information/dr1_PI.m
-lib/dynare/matlab/particle/auxiliary_initialization.m
-lib/dynare/matlab/particle/auxiliary_particle_filter.m
-lib/dynare/matlab/particle/conditional_filter_proposal.m
-lib/dynare/matlab/particle/conditional_particle_filter.m
-lib/dynare/matlab/particle/fit_gaussian_mixture.m
-lib/dynare/matlab/particle/gaussian_densities.m
-lib/dynare/matlab/particle/gaussian_filter.m
-lib/dynare/matlab/particle/gaussian_filter_bank.m
-lib/dynare/matlab/particle/gaussian_mixture_densities.m
-lib/dynare/matlab/particle/gaussian_mixture_filter.m
-lib/dynare/matlab/particle/gaussian_mixture_filter_bank.m
-lib/dynare/matlab/particle/importance_sampling.m
-lib/dynare/matlab/particle/index_resample.m
-lib/dynare/matlab/particle/local_state_space_iteration/local_state_space_iteration_2.m
-lib/dynare/matlab/particle/measurement_equations.m
-lib/dynare/matlab/particle/multivariate_smooth_resampling.m
-lib/dynare/matlab/particle/mykmeans.m
-lib/dynare/matlab/particle/neff.m
-lib/dynare/matlab/particle/online_auxiliary_filter.m
-lib/dynare/matlab/particle/probability.m
-lib/dynare/matlab/particle/probability2.m
-lib/dynare/matlab/particle/resample.m
-lib/dynare/matlab/particle/residual_resampling.m
-lib/dynare/matlab/particle/sequential_importance_particle_filter.m
-lib/dynare/matlab/particle/solve_model_for_online_filter.m
-lib/dynare/matlab/particle/spherical_radial_sigma_points.m
-lib/dynare/matlab/particle/traditional_resampling.m
-lib/dynare/matlab/particle/univariate_smooth_resampling.m
-lib/dynare/matlab/particle/unscented_sigma_points.m
-lib/dynare/matlab/perfect_foresight_simulation.m
+lib/dynare/matlab/particles/README.md
+lib/dynare/matlab/particles/doc/Makefile
+lib/dynare/matlab/particles/doc/README.md
+lib/dynare/matlab/particles/doc/make.bat
+lib/dynare/matlab/particles/doc/source/conf.py
+lib/dynare/matlab/particles/doc/source/index.rst
+lib/dynare/matlab/particles/src/auxiliary_initialization.m
+lib/dynare/matlab/particles/src/auxiliary_particle_filter.m
+lib/dynare/matlab/particles/src/conditional_filter_proposal.m
+lib/dynare/matlab/particles/src/conditional_particle_filter.m
+lib/dynare/matlab/particles/src/fit_gaussian_mixture.m
+lib/dynare/matlab/particles/src/gaussian_densities.m
+lib/dynare/matlab/particles/src/gaussian_filter.m
+lib/dynare/matlab/particles/src/gaussian_filter_bank.m
+lib/dynare/matlab/particles/src/gaussian_mixture_densities.m
+lib/dynare/matlab/particles/src/gaussian_mixture_filter.m
+lib/dynare/matlab/particles/src/gaussian_mixture_filter_bank.m
+lib/dynare/matlab/particles/src/importance_sampling.m
+lib/dynare/matlab/particles/src/measurement_equations.m
+lib/dynare/matlab/particles/src/multivariate_smooth_resampling.m
+lib/dynare/matlab/particles/src/mykmeans.m
+lib/dynare/matlab/particles/src/neff.m
+lib/dynare/matlab/particles/src/nonlinear_kalman_filter.m
+lib/dynare/matlab/particles/src/online_auxiliary_filter.m
+lib/dynare/matlab/particles/src/probability.m
+lib/dynare/matlab/particles/src/probability2.m
+lib/dynare/matlab/particles/src/probability3.m
+lib/dynare/matlab/particles/src/resample.m
+lib/dynare/matlab/particles/src/residual_resampling.m
+lib/dynare/matlab/particles/src/sequential_importance_particle_filter.m
+lib/dynare/matlab/particles/src/solve_model_for_online_filter.m
+lib/dynare/matlab/particles/src/spherical_radial_sigma_points.m
+lib/dynare/matlab/particles/src/traditional_resampling.m
+lib/dynare/matlab/particles/src/univariate_smooth_resampling.m
+lib/dynare/matlab/particles/src/unscented_sigma_points.m
+lib/dynare/matlab/perfect-foresight-models/det_cond_forecast.m
+lib/dynare/matlab/perfect-foresight-models/linear_approximation_accuracy.m
+lib/dynare/matlab/perfect-foresight-models/linear_perfect_foresight_problem.m
+lib/dynare/matlab/perfect-foresight-models/make_ex_.m
+lib/dynare/matlab/perfect-foresight-models/make_y_.m
+lib/dynare/matlab/perfect-foresight-models/perfect_foresight_mcp_problem.m
+lib/dynare/matlab/perfect-foresight-models/perfect_foresight_problem.m
+lib/dynare/matlab/perfect-foresight-models/perfect_foresight_setup.m
+lib/dynare/matlab/perfect-foresight-models/perfect_foresight_simulation.m
+lib/dynare/matlab/perfect-foresight-models/perfect_foresight_solver.m
+lib/dynare/matlab/perfect-foresight-models/perfect_foresight_solver_core.m
+lib/dynare/matlab/perfect-foresight-models/private/check_input_arguments.m
+lib/dynare/matlab/perfect-foresight-models/private/initialize_stacked_problem.m
+lib/dynare/matlab/perfect-foresight-models/private/simulation_core.m
+lib/dynare/matlab/perfect-foresight-models/sim1.m
+lib/dynare/matlab/perfect-foresight-models/sim1_lbj.m
+lib/dynare/matlab/perfect-foresight-models/sim1_linear.m
+lib/dynare/matlab/perfect-foresight-models/sim1_purely_backward.m
+lib/dynare/matlab/perfect-foresight-models/sim1_purely_forward.m
+lib/dynare/matlab/perfect-foresight-models/solve_stacked_linear_problem.m
+lib/dynare/matlab/perfect-foresight-models/solve_stacked_problem.m
 lib/dynare/matlab/plot_icforecast.m
 lib/dynare/matlab/plot_identification.m
 lib/dynare/matlab/plot_priors.m
+lib/dynare/matlab/plot_shock_decomposition.m
 lib/dynare/matlab/pltorg.m
 lib/dynare/matlab/pm3.m
 lib/dynare/matlab/pm3_core.m
 lib/dynare/matlab/posterior_analysis.m
 lib/dynare/matlab/posterior_moments.m
+lib/dynare/matlab/posterior_sampler.m
+lib/dynare/matlab/posterior_sampler_core.m
+lib/dynare/matlab/posterior_sampler_initialization.m
+lib/dynare/matlab/posterior_sampler_iteration.m
+lib/dynare/matlab/preprocessor32/dynare_m
 lib/dynare/matlab/print_bytecode_dynamic_model.m
 lib/dynare/matlab/print_bytecode_static_model.m
 lib/dynare/matlab/print_info.m
+lib/dynare/matlab/print_moments_implied_prior.m
+lib/dynare/matlab/print_table_prior.m
+lib/dynare/matlab/printline.m
 lib/dynare/matlab/prior_analysis.m
 lib/dynare/matlab/prior_bounds.m
 lib/dynare/matlab/prior_draw.m
@@ -833,173 +1102,53 @@ lib/dynare/matlab/prior_posterior_statistics.m
 lib/dynare/matlab/prior_posterior_statistics_core.m
 lib/dynare/matlab/prior_sampler.m
 lib/dynare/matlab/priordens.m
-lib/dynare/matlab/qmc_sequence.m
 lib/dynare/matlab/qr2.m
 lib/dynare/matlab/quadratic_matrix_equation_solver.m
 lib/dynare/matlab/qz/mjdgges.m
 lib/dynare/matlab/qzdiv.m
 lib/dynare/matlab/qzswitch.m
 lib/dynare/matlab/ramsey_policy.m
-lib/dynare/matlab/random_walk_metropolis_hastings.m
-lib/dynare/matlab/random_walk_metropolis_hastings_core.m
 lib/dynare/matlab/read_data_.m
 lib/dynare/matlab/read_key_value_string.m
 lib/dynare/matlab/read_variables.m
+lib/dynare/matlab/realtime_shock_decomposition.m
 lib/dynare/matlab/recursive_moments.m
+lib/dynare/matlab/reduced_form_models/local_state_space_iteration_2/local_state_space_iteration_2.m
 lib/dynare/matlab/reduced_rank_cholesky.m
-lib/dynare/matlab/replace_object_in_a_one_dimensional_cell_array.m
-lib/dynare/matlab/reports/@elements/addGraph.m
-lib/dynare/matlab/reports/@elements/addTable.m
-lib/dynare/matlab/reports/@elements/addVspace.m
-lib/dynare/matlab/reports/@elements/display.m
-lib/dynare/matlab/reports/@elements/elements.m
-lib/dynare/matlab/reports/@elements/end.m
-lib/dynare/matlab/reports/@elements/getElements.m
-lib/dynare/matlab/reports/@elements/numElements.m
-lib/dynare/matlab/reports/@elements/numVspace.m
-lib/dynare/matlab/reports/@elements/subsasgn.m
-lib/dynare/matlab/reports/@elements/subsref.m
-lib/dynare/matlab/reports/@graph/addSeries.m
-lib/dynare/matlab/reports/@graph/createGraph.m
-lib/dynare/matlab/reports/@graph/display.m
-lib/dynare/matlab/reports/@graph/end.m
-lib/dynare/matlab/reports/@graph/graph.m
-lib/dynare/matlab/reports/@graph/subsasgn.m
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-lib/dynare/matlab/reports/@graph/write.m
-lib/dynare/matlab/reports/@objArray/addObj.m
-lib/dynare/matlab/reports/@objArray/display.m
-lib/dynare/matlab/reports/@objArray/getObjs.m
-lib/dynare/matlab/reports/@objArray/numObjArray.m
-lib/dynare/matlab/reports/@objArray/objArray.m
-lib/dynare/matlab/reports/@objArray/subsasgn.m
-lib/dynare/matlab/reports/@objArray/subsref.m
-lib/dynare/matlab/reports/@page/addSection.m
-lib/dynare/matlab/reports/@page/display.m
-lib/dynare/matlab/reports/@page/end.m
-lib/dynare/matlab/reports/@page/numSections.m
-lib/dynare/matlab/reports/@page/page.m
-lib/dynare/matlab/reports/@page/subsasgn.m
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-lib/dynare/matlab/reports/@pages/numPages.m
-lib/dynare/matlab/reports/@pages/pages.m
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-lib/dynare/matlab/reports/@report/compile.m
-lib/dynare/matlab/reports/@report/display.m
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-lib/dynare/matlab/reports/@report/report.m
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-lib/dynare/matlab/reports/areParensNext.m
-lib/dynare/matlab/reports/reporting_object_display.m
 lib/dynare/matlab/resid.m
 lib/dynare/matlab/resol.m
 lib/dynare/matlab/restricted_steadystate.m
 lib/dynare/matlab/reversed_extended_path.m
-lib/dynare/matlab/rndprior.m
+lib/dynare/matlab/rotated_slice_sampler.m
 lib/dynare/matlab/row_header_width.m
 lib/dynare/matlab/rplot.m
 lib/dynare/matlab/sample_autocovariance.m
 lib/dynare/matlab/sample_hp_filter.m
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 lib/dynare/matlab/save_results.m
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 lib/dynare/matlab/score.m
 lib/dynare/matlab/selec_posterior_draws.m
 lib/dynare/matlab/select_from_table.m
+lib/dynare/matlab/select_qz_criterium_value.m
 lib/dynare/matlab/selif.m
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 lib/dynare/matlab/set_all_parameters.m
+lib/dynare/matlab/set_default_initial_condition_decomposition_options.m
 lib/dynare/matlab/set_default_option.m
+lib/dynare/matlab/set_default_plot_shock_decomposition_options.m
 lib/dynare/matlab/set_dynare_random_generator_state.m
 lib/dynare/matlab/set_dynare_seed.m
 lib/dynare/matlab/set_dynare_threads.m
+lib/dynare/matlab/set_local_param_value.m
 lib/dynare/matlab/set_param_value.m
 lib/dynare/matlab/set_parameters.m
+lib/dynare/matlab/set_parameters_locally.m
 lib/dynare/matlab/set_prior.m
-lib/dynare/matlab/set_shocks.m
 lib/dynare/matlab/set_state_space.m
-lib/dynare/matlab/setup_stochastic_perfect_foresight_model_solver.m
 lib/dynare/matlab/shiftS.m
 lib/dynare/matlab/shock_decomposition.m
-lib/dynare/matlab/sim1.m
-lib/dynare/matlab/sim1_lbj.m
-lib/dynare/matlab/sim1_purely_backward.m
-lib/dynare/matlab/sim1_purely_forward.m
-lib/dynare/matlab/simplex_optimization_routine.m
-lib/dynare/matlab/simpsa.m
-lib/dynare/matlab/simpsaget.m
-lib/dynare/matlab/simpsaset.m
-lib/dynare/matlab/simul.m
+lib/dynare/matlab/simul_backward_linear_model.m
+lib/dynare/matlab/simul_backward_model.m
 lib/dynare/matlab/simul_backward_nonlinear_model.m
 lib/dynare/matlab/simulated_moment_uncertainty.m
 lib/dynare/matlab/simulated_moments_estimation.m
@@ -1008,7 +1157,9 @@ lib/dynare/matlab/simult_.m
 lib/dynare/matlab/simultxdet.m
 lib/dynare/matlab/size_of_the_reduced_form_model.m
 lib/dynare/matlab/skipline.m
+lib/dynare/matlab/slice_sampler.m
 lib/dynare/matlab/smm_objective.m
+lib/dynare/matlab/smoother2histval.m
 lib/dynare/matlab/solve1.m
 lib/dynare/matlab/solve_one_boundary.m
 lib/dynare/matlab/solve_perfect_foresight_model.m
@@ -1018,74 +1169,91 @@ lib/dynare/matlab/steady_.m
 lib/dynare/matlab/step_length_correction.m
 lib/dynare/matlab/stoch_simul.m
 lib/dynare/matlab/stochastic_solvers.m
+lib/dynare/matlab/store_smoother_results.m
 lib/dynare/matlab/subset.m
+lib/dynare/matlab/supported_octave_version.m
 lib/dynare/matlab/symmetric_matrix_index.m
 lib/dynare/matlab/test_for_deep_parameters_calibration.m
 lib/dynare/matlab/th_autocovariances.m
 lib/dynare/matlab/thet2tau.m
 lib/dynare/matlab/trace_plot.m
-lib/dynare/matlab/transition_matrix.m
+lib/dynare/matlab/trust_region.m
 lib/dynare/matlab/uniform_specification.m
 lib/dynare/matlab/update_last_mh_history_file.m
 lib/dynare/matlab/user_has_matlab_license.m
 lib/dynare/matlab/user_has_octave_forge_package.m
-lib/dynare/matlab/utilities/dataset/compute_acov.m
-lib/dynare/matlab/utilities/dataset/compute_corr.m
-lib/dynare/matlab/utilities/dataset/compute_cova.m
-lib/dynare/matlab/utilities/dataset/compute_stdv.m
 lib/dynare/matlab/utilities/dataset/describe_missing_data.m
 lib/dynare/matlab/utilities/dataset/descriptive_statistics.m
 lib/dynare/matlab/utilities/dataset/initialize_dataset.m
-lib/dynare/matlab/utilities/dates/add_periods_to_array_of_dates.m
-lib/dynare/matlab/utilities/dates/date2string.m
-lib/dynare/matlab/utilities/dates/freq2string.m
-lib/dynare/matlab/utilities/dates/isdate.m
-lib/dynare/matlab/utilities/dates/isdates.m
-lib/dynare/matlab/utilities/dates/isfreq.m
-lib/dynare/matlab/utilities/dates/ismonthly.m
-lib/dynare/matlab/utilities/dates/isquaterly.m
-lib/dynare/matlab/utilities/dates/issubperiod.m
-lib/dynare/matlab/utilities/dates/isweekly.m
-lib/dynare/matlab/utilities/dates/isyearly.m
-lib/dynare/matlab/utilities/dates/string2date.m
-lib/dynare/matlab/utilities/dates/string2freq.m
+lib/dynare/matlab/utilities/dataset/lagged.m
+lib/dynare/matlab/utilities/dataset/makedataset.m
+lib/dynare/matlab/utilities/dataset/nanautocovariance.m
+lib/dynare/matlab/utilities/dataset/nancovariance.m
+lib/dynare/matlab/utilities/dataset/nanmoments.m
+lib/dynare/matlab/utilities/dataset/nanvariance.m
+lib/dynare/matlab/utilities/dataset/quarterly2annual.m
 lib/dynare/matlab/utilities/doc/dynInfo.m
 lib/dynare/matlab/utilities/doc/get_internal_doc_block.m
-lib/dynare/matlab/utilities/dseries/isdseries.m
+lib/dynare/matlab/utilities/general/clean_current_folder.m
 lib/dynare/matlab/utilities/general/compare_vectors.m
+lib/dynare/matlab/utilities/general/delete_stale_file.m
 lib/dynare/matlab/utilities/general/demean.m
+lib/dynare/matlab/utilities/general/disp_verbose.m
+lib/dynare/matlab/utilities/general/dyn_mex.m
+lib/dynare/matlab/utilities/general/get_all_variables_but_lagged_leaded_exogenous.m
+lib/dynare/matlab/utilities/general/indices_lagged_leaded_exogenous_variables.m
 lib/dynare/matlab/utilities/general/isaletter.m
-lib/dynare/matlab/utilities/general/iscellofchar.m
+lib/dynare/matlab/utilities/general/isanynan.m
 lib/dynare/matlab/utilities/general/isconst.m
 lib/dynare/matlab/utilities/general/isdiagonal.m
+lib/dynare/matlab/utilities/general/isestimation.m
 lib/dynare/matlab/utilities/general/iseven.m
 lib/dynare/matlab/utilities/general/isfile.m
-lib/dynare/matlab/utilities/general/isglobalinbase.m
+lib/dynare/matlab/utilities/general/isinestimationobjective.m
 lib/dynare/matlab/utilities/general/isint.m
-lib/dynare/matlab/utilities/general/isoctave.m
 lib/dynare/matlab/utilities/general/isodd.m
 lib/dynare/matlab/utilities/general/ispd.m
 lib/dynare/matlab/utilities/general/isquare.m
-lib/dynare/matlab/utilities/general/name2tex.m
+lib/dynare/matlab/utilities/general/log_variable.m
 lib/dynare/matlab/utilities/general/nandemean.m
 lib/dynare/matlab/utilities/general/ndim.m
-lib/dynare/matlab/utilities/tests/build_report_summary.m
-lib/dynare/matlab/utilities/tests/dynTest.m
-lib/dynare/matlab/utilities/tests/dyn_assert.m
-lib/dynare/matlab/utilities/tests/get_directory_description.m
-lib/dynare/matlab/utilities/tests/is_unitary_test_available.m
-lib/dynare/matlab/utilities/tests/mtest.m
-lib/dynare/matlab/utilities/tests/run_unitary_tests.m
-lib/dynare/matlab/utilities/tests/run_unitary_tests_in_directory.m
+lib/dynare/matlab/utilities/general/remove_fractional_xticks.m
+lib/dynare/matlab/utilities/graphics/colorspace.m
+lib/dynare/matlab/utilities/graphics/distinguishable_colors.m
+lib/dynare/matlab/utilities/tests/README.md
+lib/dynare/matlab/utilities/tests/doc/Makefile
+lib/dynare/matlab/utilities/tests/doc/README.md
+lib/dynare/matlab/utilities/tests/doc/make.bat
+lib/dynare/matlab/utilities/tests/doc/source/conf.py
+lib/dynare/matlab/utilities/tests/doc/source/index.rst
+lib/dynare/matlab/utilities/tests/src/Contents.m
+lib/dynare/matlab/utilities/tests/src/build_report_summary.m
+lib/dynare/matlab/utilities/tests/src/dassert.m
+lib/dynare/matlab/utilities/tests/src/dtest.m
+lib/dynare/matlab/utilities/tests/src/get_directory_description.m
+lib/dynare/matlab/utilities/tests/src/initialize_unit_tests_toolbox.m
+lib/dynare/matlab/utilities/tests/src/is_unitary_test_available.m
+lib/dynare/matlab/utilities/tests/src/missing/isoctave/isoctave.m
+lib/dynare/matlab/utilities/tests/src/missing/skipline/skipline.m
+lib/dynare/matlab/utilities/tests/src/mtest.m
+lib/dynare/matlab/utilities/tests/src/run_unitary_tests.m
+lib/dynare/matlab/utilities/tests/src/run_unitary_tests_in_directory.m
 lib/dynare/matlab/var_sample_moments.m
 lib/dynare/matlab/variance_decomposition_mc_analysis.m
 lib/dynare/matlab/varlist_indices.m
+lib/dynare/matlab/ver_greater_than.m
+lib/dynare/matlab/ver_greater_than_equal.m
+lib/dynare/matlab/ver_less_than.m
 lib/dynare/matlab/vnorm.m
 lib/dynare/matlab/warning_config.m
 lib/dynare/matlab/write_latex_definitions.m
+lib/dynare/matlab/write_latex_parameter_table.m
+lib/dynare/matlab/write_latex_prior_table.m
 lib/dynare/matlab/write_mh_history_file.m
+lib/dynare/matlab/writecellofchar.m
 lib/dynare/matlab/writedata.m
 lib/dynare/matlab/writedata_text.m
+lib/dynare/matlab/writematrixofchar.m
 lib/dynare/mex/octave/A_times_B_kronecker_C.mex
 lib/dynare/mex/octave/block_kalman_filter.mex
 lib/dynare/mex/octave/bytecode.mex
@@ -1094,7 +1262,6 @@ lib/dynare/mex/octave/gensylv.mex
 lib/dynare/mex/octave/k_order_perturbation.mex
 lib/dynare/mex/octave/local_state_space_iteration_2.mex
 lib/dynare/mex/octave/mjdgges.mex
-lib/dynare/mex/octave/ordschur.oct
 lib/dynare/mex/octave/qmc_sequence.mex
 lib/dynare/mex/octave/qzcomplex.oct
 lib/dynare/mex/octave/sparse_hessian_times_B_kronecker_C.mex