CDO is a collection of command line Operators to manipulate and analyse Climate

model Data. Supported file formats are GRIB, netCDF, SERVICE, EXTRA and IEG.
There are more than 250 operators available. The following table gives a short
overview about the main categories.

* File information (info, sinfo, diff, ...)
* File operations (copy, cat, merge, split*, ...)
* Selection (selcode, selvar, sellevel, seltimestep, ...)
* Missing values (setctomiss, setmisstoc, setrtomiss)
* Arithmetic (add, sub, mul, div, ...)
* Mathematical functions (sqrt, exp, log, sin, cos, ...)
* Comparision (eq, ne, le, lt, ge, gt, ...)
* Conditions (ifthen, ifnotthen, ifthenc, ifnotthenc)
* Field statistic (fldsum, fldavg, fldstd, fldmin, fldmax, ...)
* Vertical statistic (vertsum, vertavg, vertstd, vertmin, ...)
* Time range statistic (timavg, yearavg, monavg, dayavg, ...)
* Ensemble statistic (enssum, ensavg, ensstd, ensmin, ...)
* Regression (detrend)
* Field interpolation (remapbil, remapcon, remapdis, ...)
* Vertical interpolation (ml2pl, ml2hl)
* Time interpolation (inttime, intyear)

WWW: http://www.mpimet.mpg.de/fileadmin/software/cdo/

PR:		ports/98099
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>

4 files changed, 76 insertions, 0 deletions

diff --git a/science/cdo/Makefile b/science/cdo/Makefile
new file mode 100644
index 000000000000..2b66d9423ccc
--- /dev/null
+++ b/science/cdo/Makefile
@@ -0,0 +1,40 @@
+# ex:ts=8
+# New ports collection makefile for:	CDO
+# Date created:			29 May 2006
+# Whom:				Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	cdo
+PORTVERSION=	0.9.13
+CATEGORIES=	science
+MASTER_SITES=	http://www.mpimet.mpg.de/fileadmin/software/cdo/ \
+		http://sunpoet.net/distfiles/
+
+MAINTAINER=	sunpoet@sunpoet.net
+COMMENT=	Climate Data Operators
+
+GNU_CONFIGURE=	yes
+
+CONFIGURE_ARGS=	--program-transform-name=""
+CONFIGURE_ENV=	CC="${CC}" \
+		CFLAGS="${CFLAGS} -I${LOCALBASE}/include ${PTHREAD_CFLAGS}" \
+		LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib ${PTHREAD_LIBS}"
+
+PLIST_FILES=	bin/cdo
+
+OPTIONS=	HDF5	"HDF5 support" off \
+		NETCDF	"NETCDF support" off
+
+.if defined(WITH_HDF5)
+CONFIGURE_ARGS+=	--with-hdf5=${LOCALBASE}/include
+LIB_DEPENDS+=		hdf5.0:${PORTSDIR}/science/hdf5
+.endif
+
+.if defined(WITH_NETCDF)
+CONFIGURE_ARGS+=	--with-netcdf=${LOCALBASE}/include
+LIB_DEPENDS+=		netcdf.1:${PORTSDIR}/science/netcdf
+.endif
+
+.include <bsd.port.mk>
diff --git a/science/cdo/distinfo b/science/cdo/distinfo
new file mode 100644
index 000000000000..f182a2f9373a
--- /dev/null
+++ b/science/cdo/distinfo
@@ -0,0 +1,3 @@
+MD5 (cdo-0.9.13.tar.gz) = dc93ea5130c02fa6c1d56c0296df623b
+SHA256 (cdo-0.9.13.tar.gz) = d78d24761c451f6aaae0e631b4dec8c341acb593806a0f95d0dd4ac634ece87a
+SIZE (cdo-0.9.13.tar.gz) = 594776
diff --git a/science/cdo/files/patch-src__cdilib.c b/science/cdo/files/patch-src__cdilib.c
new file mode 100644
index 000000000000..e252ab4c158e
--- /dev/null
+++ b/science/cdo/files/patch-src__cdilib.c
@@ -0,0 +1,10 @@
+--- src/cdilib.c.orig	Mon Mar  6 17:08:36 2006
++++ src/cdilib.c	Mon May 29 22:28:01 2006
+@@ -3948,7 +3948,6 @@
+ 
+ #if ! defined (HAVE_MALLOC_H)
+ #  if defined (__sun) || defined (__i386) || defined (__ia64) || defined (SX)
+-#    define  HAVE_MALLOC_H
+ #  endif
+ #endif
+ 
diff --git a/science/cdo/pkg-descr b/science/cdo/pkg-descr
new file mode 100644
index 000000000000..ae8e486f05d2
--- /dev/null
+++ b/science/cdo/pkg-descr
@@ -0,0 +1,23 @@
+CDO is a collection of command line Operators to manipulate and analyse Climate
+model Data. Supported file formats are GRIB, netCDF, SERVICE, EXTRA and IEG.
+There are more than 250 operators available. The following table gives a short
+overview about the main categories.
+
+* File information (info, sinfo, diff, ...)
+* File operations (copy, cat, merge, split*, ...)
+* Selection (selcode, selvar, sellevel, seltimestep, ...)
+* Missing values (setctomiss, setmisstoc, setrtomiss)
+* Arithmetic (add, sub, mul, div, ...)
+* Mathematical functions (sqrt, exp, log, sin, cos, ...)
+* Comparision (eq, ne, le, lt, ge, gt, ...)
+* Conditions (ifthen, ifnotthen, ifthenc, ifnotthenc)
+* Field statistic (fldsum, fldavg, fldstd, fldmin, fldmax, ...)
+* Vertical statistic (vertsum, vertavg, vertstd, vertmin, ...)
+* Time range statistic (timavg, yearavg, monavg, dayavg, ...)
+* Ensemble statistic (enssum, ensavg, ensstd, ensmin, ...)
+* Regression (detrend)
+* Field interpolation (remapbil, remapcon, remapdis, ...)
+* Vertical interpolation (ml2pl, ml2hl)
+* Time interpolation (inttime, intyear)
+
+WWW: http://www.mpimet.mpg.de/fileadmin/software/cdo/