- Update to 1.12b

- Pass maintainership to submitter

PR:		ports/149822
Submitted by:	C-S <c-s AT c-s.li>

3 files changed, 409 insertions, 175 deletions

diff --git a/science/mcstas/Makefile b/science/mcstas/Makefile
index 51f3cfe3c062..678336e90af1 100644
--- a/science/mcstas/Makefile
+++ b/science/mcstas/Makefile
@@ -5,15 +5,16 @@
 # $FreeBSD$
 
 PORTNAME=	mcstas
-PORTVERSION=	1.9
-PORTREVISION=	5
+PORTVERSION=	1.12b
 CATEGORIES=	science
 MASTER_SITES=	http://www.mcstas.org/download/
 DISTNAME=	${PORTNAME}-${PORTVERSION}-src
 
-MAINTAINER=	ports@FreeBSD.org
+MAINTAINER=	c-s@c-s.li
 COMMENT=	A neutron ray-trace simulation package
 
+LICENSE=	GPLv2
+
 BUILD_DEPENDS=	pgxwin_server:${PORTSDIR}/graphics/pgplot
 RUN_DEPENDS=	${SITE_PERL}/${PERL_ARCH}/PDL.pm:${PORTSDIR}/math/PDL \
 		${SITE_PERL}/${PERL_ARCH}/Tk.pm:${PORTSDIR}/x11-toolkits/p5-Tk
@@ -29,6 +30,15 @@ PERL_ARCHNAME!=	perl -V:archname
 
 PLIST_SUB+=	PERL_PORT=perl5 PERL_ARCHNAME=${PERL_ARCHNAME:S/archname='//:S/';//}
 
+MAN1=		mcconvert.1 \
+		mcdisplay.1 \
+		mcdoc.1 \
+		mcformat.1 \
+		mcgui.1 \
+		mcplot.1 \
+		mcrun.1 \
+		mcstas.1 \
+
 post-configure:
 		@cd ${WRKSRC}; make pgplot
 
diff --git a/science/mcstas/distinfo b/science/mcstas/distinfo
index 9cf49d83e58a..d3497e474207 100644
--- a/science/mcstas/distinfo
+++ b/science/mcstas/distinfo
@@ -1,3 +1,3 @@
-MD5 (mcstas-1.9-src.tar.gz) = 62fef11e2445e3e2c16b00cf5860dd97
-SHA256 (mcstas-1.9-src.tar.gz) = 85c3b09ec35ad9e649b9449f731c33cf925f3a2b04888de56b9ee0cb862c27b9
-SIZE (mcstas-1.9-src.tar.gz) = 8696451
+MD5 (mcstas-1.12b-src.tar.gz) = 6dc24158583eb7e5d5b9aed1631a3fee
+SHA256 (mcstas-1.12b-src.tar.gz) = 62ade99e765b772cf606ea94c6412280d4406debb3dccd9b98d89b54554652a6
+SIZE (mcstas-1.12b-src.tar.gz) = 26077552
diff --git a/science/mcstas/pkg-plist b/science/mcstas/pkg-plist
index 0c9d44b6a890..5a07a72a7dea 100644
--- a/science/mcstas/pkg-plist
+++ b/science/mcstas/pkg-plist
@@ -1,99 +1,192 @@
-bin/mcstas
 bin/gscan
+bin/mcconvert
+bin/mcdaemon
 bin/mcdisplay
+bin/mcdoc
+bin/mcformat
+bin/mcformatgui
+bin/mcgui
 bin/mcplot
 bin/mcresplot
 bin/mcrun
-bin/mcgui
-bin/mcdaemon
-bin/mcdoc
+bin/mcstas
 bin/mcstas2vitess
-bin/mcconvert
+lib/mcstas/LGPL
+lib/mcstas/LICENSE.LIB
+lib/mcstas/README
 lib/mcstas/contrib/Al_window.comp
+lib/mcstas/contrib/Al_window.html
 lib/mcstas/contrib/Collimator_ROC.comp
+lib/mcstas/contrib/Collimator_ROC.html
+lib/mcstas/contrib/Exact_radial_coll.comp
+lib/mcstas/contrib/Exact_radial_coll.html
+lib/mcstas/contrib/FermiChopper_ILL.comp
+lib/mcstas/contrib/FermiChopper_ILL.html
 lib/mcstas/contrib/Filter_graphite.comp
-lib/mcstas/contrib/Filter_powder.comp
+lib/mcstas/contrib/Filter_graphite.html
+lib/mcstas/contrib/Gas_tables/BinBF3.table
+lib/mcstas/contrib/Gas_tables/BinCF4.table
+lib/mcstas/contrib/Gas_tables/He3inAr.table
+lib/mcstas/contrib/Gas_tables/He3inC3H8.table
+lib/mcstas/contrib/Gas_tables/He3inC4H10.table
+lib/mcstas/contrib/Gas_tables/He3inCF4.table
+lib/mcstas/contrib/Gas_tables/He3inCO2.table
+lib/mcstas/contrib/Gas_tables/He3inHe.table
+lib/mcstas/contrib/Gas_tables/He3inXeTMA2point5percent.table
+lib/mcstas/contrib/Gas_tables/He3inXeTMA5percent.table
+lib/mcstas/contrib/Gas_tables/NinCF4.table
+lib/mcstas/contrib/Gas_tables/NinN2.table
+lib/mcstas/contrib/Gas_tables/gas.table
 lib/mcstas/contrib/Guide_curved.comp
+lib/mcstas/contrib/Guide_curved.html
+lib/mcstas/contrib/Guide_four_side.comp
+lib/mcstas/contrib/Guide_four_side.html
+lib/mcstas/contrib/Guide_four_side_10_shells.comp
+lib/mcstas/contrib/Guide_four_side_10_shells.html
+lib/mcstas/contrib/Guide_four_side_2_shells.comp
+lib/mcstas/contrib/Guide_four_side_2_shells.html
 lib/mcstas/contrib/Guide_honeycomb.comp
-lib/mcstas/contrib/Guide_tapering.comp
+lib/mcstas/contrib/Guide_honeycomb.html
 lib/mcstas/contrib/He3_cell.comp
+lib/mcstas/contrib/He3_cell.html
 lib/mcstas/contrib/ISIS_moderator.comp
-lib/mcstas/contrib/PSD_monitor_rad.comp
-lib/mcstas/contrib/SANS_AnySamp.comp
-lib/mcstas/contrib/SANS_DebyeS.comp
-lib/mcstas/contrib/SANS_Guinier.comp
-lib/mcstas/contrib/SNS_source.comp
-lib/mcstas/contrib/Virtual_tripoli4_input.comp
-lib/mcstas/contrib/Virtual_tripoli4_output.comp
+lib/mcstas/contrib/ISIS_moderator.html
 lib/mcstas/contrib/ISIS_tables/h.broad
 lib/mcstas/contrib/ISIS_tables/h.ch4
+lib/mcstas/contrib/ISIS_tables/h.crisp
 lib/mcstas/contrib/ISIS_tables/h.groove
 lib/mcstas/contrib/ISIS_tables/h.h2
 lib/mcstas/contrib/ISIS_tables/h.hydrogen
 lib/mcstas/contrib/ISIS_tables/h.narrow
 lib/mcstas/contrib/ISIS_tables/h.water
+lib/mcstas/contrib/Lens.comp
+lib/mcstas/contrib/Lens.html
+lib/mcstas/contrib/Lens_simple.comp
+lib/mcstas/contrib/Lens_simple.html
+lib/mcstas/contrib/MirrorElli.comp
+lib/mcstas/contrib/MirrorElli.html
+lib/mcstas/contrib/MirrorPara.comp
+lib/mcstas/contrib/MirrorPara.html
 lib/mcstas/contrib/Monochromator_2foc.comp
-lib/mcstas/contrib/SiC.comp
-lib/mcstas/contrib/doc/ISISdoc.pdf
-lib/mcstas/contrib/doc/ISISdoc.ps
-lib/mcstas/contrib/Al_window.html
-lib/mcstas/contrib/Collimator_ROC.html
-lib/mcstas/contrib/Filter_graphite.html
-lib/mcstas/contrib/Filter_powder.html
-lib/mcstas/contrib/Guide_curved.html
-lib/mcstas/contrib/Guide_honeycomb.html
-lib/mcstas/contrib/Guide_tapering.html
-lib/mcstas/contrib/He3_cell.html
-lib/mcstas/contrib/ISIS_moderator.html
 lib/mcstas/contrib/Monochromator_2foc.html
-lib/mcstas/contrib/SiC.html
+lib/mcstas/contrib/Multilayer_Sample.comp
+lib/mcstas/contrib/Multilayer_Sample.html
+lib/mcstas/contrib/PSD_Detector.comp
+lib/mcstas/contrib/PSD_Detector.html
+lib/mcstas/contrib/PSD_monitor_rad.comp
 lib/mcstas/contrib/PSD_monitor_rad.html
+lib/mcstas/contrib/SANS_AnySamp.comp
 lib/mcstas/contrib/SANS_AnySamp.html
+lib/mcstas/contrib/SANS_DebyeS.comp
 lib/mcstas/contrib/SANS_DebyeS.html
+lib/mcstas/contrib/SANS_Guinier.comp
 lib/mcstas/contrib/SANS_Guinier.html
+lib/mcstas/contrib/SNS_source.comp
 lib/mcstas/contrib/SNS_source.html
+lib/mcstas/contrib/Sapphire_Filter.comp
+lib/mcstas/contrib/Sapphire_Filter.html
+lib/mcstas/contrib/SiC.comp
+lib/mcstas/contrib/SiC.html
+lib/mcstas/contrib/Source_multi_surfaces.comp
+lib/mcstas/contrib/Source_multi_surfaces.html
+lib/mcstas/contrib/Virtual_mcnp_input.comp
+lib/mcstas/contrib/Virtual_mcnp_input.html
+lib/mcstas/contrib/Virtual_mcnp_output.comp
+lib/mcstas/contrib/Virtual_mcnp_output.html
+lib/mcstas/contrib/Virtual_tripoli4_input.comp
 lib/mcstas/contrib/Virtual_tripoli4_input.html
+lib/mcstas/contrib/Virtual_tripoli4_output.comp
 lib/mcstas/contrib/Virtual_tripoli4_output.html
+lib/mcstas/contrib/doc/ISISdoc.pdf
+lib/mcstas/contrib/doc/ISISdoc.ps
+lib/mcstas/contrib/multi_pipe.comp
+lib/mcstas/contrib/multi_pipe.html
+lib/mcstas/data/Ag.laz
+lib/mcstas/data/Al.lau
 lib/mcstas/data/Al.laz
+lib/mcstas/data/Al2O3_sapphire.laz
+lib/mcstas/data/Al2O3_sapphire.trm
+lib/mcstas/data/Au.laz
+lib/mcstas/data/B4C.lau
+lib/mcstas/data/Ba.laz
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+lib/mcstas/data/BeO.lau
+lib/mcstas/data/BeO.laz
+lib/mcstas/data/Bi.laz
+lib/mcstas/data/C60.lau
+lib/mcstas/data/C_diamond.lau
+lib/mcstas/data/C_diamond.laz
+lib/mcstas/data/C_graphite.lau
+lib/mcstas/data/C_graphite.laz
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+lib/mcstas/data/Cr.laz
+lib/mcstas/data/Cs.laz
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+lib/mcstas/data/D2O_liq.qSq
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+lib/mcstas/data/Ga.laz
+lib/mcstas/data/Gd.laz
+lib/mcstas/data/Ge.lau
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-lib/mcstas/data/Graphite.laz
-lib/mcstas/data/He4.sqw
+lib/mcstas/data/Ge_liq_coh.sqw
+lib/mcstas/data/Ge_liq_inc.sqw
+lib/mcstas/data/H2O_ice_1h.laz
+lib/mcstas/data/H2O_liq.qSq
+lib/mcstas/data/HOPG.rfl
+lib/mcstas/data/HOPG.trm
+lib/mcstas/data/He4_liq_coh.sqw
+lib/mcstas/data/Hg.laz
+lib/mcstas/data/I2.laz
+lib/mcstas/data/In.lau
+lib/mcstas/data/K.laz
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+lib/mcstas/data/LiF.laz
+lib/mcstas/data/Na2Ca3Al2F14.laz
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+lib/mcstas/data/Ne_liq_tot.sqw
 lib/mcstas/data/Ni.laz
-lib/mcstas/data/Rb_coh.sqw
-lib/mcstas/data/Rb_inc.sqw
-lib/mcstas/data/Sapphire.trm
+lib/mcstas/data/Pb.laz
+lib/mcstas/data/Pd.laz
+lib/mcstas/data/Pt.laz
+lib/mcstas/data/README
+lib/mcstas/data/Rb.laz
+lib/mcstas/data/Rb_liq_coh.sqw
+lib/mcstas/data/Rb_liq_inc.sqw
+lib/mcstas/data/Rb_liq_tot.sqw
+lib/mcstas/data/Se_alpha.laz
+lib/mcstas/data/Se_beta.laz
 lib/mcstas/data/Si.laz
+lib/mcstas/data/SiO2_cristobalite.lau
+lib/mcstas/data/SiO2_liq.qSq
+lib/mcstas/data/SiO2_quartza.lau
+lib/mcstas/data/SiO2_quartza.laz
+lib/mcstas/data/SiO2_quartzb.lau
+lib/mcstas/data/SiO2_quartzb.laz
+lib/mcstas/data/Sn_alpha.laz
+lib/mcstas/data/Sn_beta.laz
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+lib/mcstas/data/TiO2_rutile.lau
+lib/mcstas/data/Tl.laz
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+lib/mcstas/data/Y2O3.laz
+lib/mcstas/data/Y3Fe5O12_YIG.laz
+lib/mcstas/data/YBaCuO.lau
 lib/mcstas/data/Zn.laz
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-lib/mcstas/data/BeO.lau
-lib/mcstas/data/HOPG.rfl
-lib/mcstas/data/HOPG.trm
-lib/mcstas/data/README
-lib/mcstas/data/YBaCuO.lau
 lib/mcstas/data/adrenaline.lau
 lib/mcstas/data/aspirin.lau
-lib/mcstas/data/c60.lau
-lib/mcstas/data/cristobalite.lau
-lib/mcstas/data/diamond.lau
-lib/mcstas/data/graphite.lau
+lib/mcstas/data/bunny.off
 lib/mcstas/data/leucine.lau
-lib/mcstas/data/quartz.lau
-lib/mcstas/data/quartzb.lau
-lib/mcstas/data/rutile.lau
+lib/mcstas/data/socket.off
+lib/mcstas/data/source_sct091_tu_02_1.dat
+lib/mcstas/data/source_sct21a_td_05_1.dat
+lib/mcstas/data/supermirror_m2.rfl
+lib/mcstas/data/supermirror_m3.rfl
 lib/mcstas/doc/README
 lib/mcstas/doc/mcstas-components.pdf
-lib/mcstas/doc/mcstas-components.ps.gz
 lib/mcstas/doc/mcstas-manual.pdf
-lib/mcstas/doc/mcstas-manual.ps.gz
 lib/mcstas/doc/tutorial/html/WARNINGS
 lib/mcstas/doc/tutorial/html/footnode.html
 lib/mcstas/doc/tutorial/html/images.aux
@@ -122,13 +215,14 @@ lib/mcstas/doc/tutorial/html/img26.png
 lib/mcstas/doc/tutorial/html/img27.png
 lib/mcstas/doc/tutorial/html/img28.png
 lib/mcstas/doc/tutorial/html/img29.png
+lib/mcstas/doc/tutorial/html/img3.png
 lib/mcstas/doc/tutorial/html/img30.png
 lib/mcstas/doc/tutorial/html/img31.png
 lib/mcstas/doc/tutorial/html/img32.png
 lib/mcstas/doc/tutorial/html/img33.png
 lib/mcstas/doc/tutorial/html/img34.png
 lib/mcstas/doc/tutorial/html/img35.png
-lib/mcstas/doc/tutorial/html/img3.png
+lib/mcstas/doc/tutorial/html/img36.png
 lib/mcstas/doc/tutorial/html/img4.png
 lib/mcstas/doc/tutorial/html/img5.png
 lib/mcstas/doc/tutorial/html/img6.png
@@ -164,137 +258,227 @@ lib/mcstas/doc/tutorial/html/up_g.png
 lib/mcstas/doc/tutorial/pics/bragg.eps
 lib/mcstas/doc/tutorial/pics/instr.eps
 lib/mcstas/doc/tutorial/pics/mono.eps
+lib/mcstas/doc/tutorial/tutorial.pdf
 lib/mcstas/doc/tutorial/tutorial.ps
 lib/mcstas/doc/tutorial/tutorial.tex
 lib/mcstas/doc/tutorial/tutorial_meat.tex
 lib/mcstas/editors/README
 lib/mcstas/editors/emacs
+lib/mcstas/editors/mcstas.lang
+lib/mcstas/editors/mcstas.vim
 lib/mcstas/editors/mcstas.xml
+lib/mcstas/editors/mcstas1.lang
+lib/mcstas/editors/mcstas2.lang
 lib/mcstas/editors/nedit
-lib/mcstas/examples/FZJ_SANS_KWS2_AnySample.instr
-lib/mcstas/examples/FZJ_SANS_KWS2_DebyeS.instr
-lib/mcstas/examples/FZJ_SANS_KWS2_Guinier.instr
-lib/mcstas/examples/FZJ_SANS_KWS2_NoSample.instr
-lib/mcstas/examples/ILL_D9.instr
-lib/mcstas/examples/ILL_H113.instr
-lib/mcstas/examples/ILL_H142.instr
-lib/mcstas/examples/ILL_H15.instr
-lib/mcstas/examples/ILL_H24.instr
-lib/mcstas/examples/ILL_H53.instr
-lib/mcstas/examples/ISIS_Hetfull.instr
-lib/mcstas/examples/ISIStest.instr
-lib/mcstas/examples/PSI_Focus.instr
-lib/mcstas/examples/SANS.instr
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+lib/mcstas/examples/FocalisationMirrors.html
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+lib/mcstas/examples/Test_PSD_Detector.instr
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+lib/mcstas/examples/templateTOF.instr
 lib/mcstas/examples/vanadium_example.html
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 lib/mcstas/misc/Beam_spy.comp
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-lib/mcstas/monitors/TOF_monitor.comp
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 lib/mcstas/monitors/DivLambda_monitor.html
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+lib/mcstas/monitors/Divergence_monitor.comp
 lib/mcstas/monitors/Divergence_monitor.html
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 lib/mcstas/monitors/EPSD_monitor.html
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 lib/mcstas/monitors/E_monitor.html
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+lib/mcstas/monitors/L_monitor.comp
 lib/mcstas/monitors/L_monitor.html
+lib/mcstas/monitors/MeanPolLambda_monitor.comp
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 lib/mcstas/monitors/Monitor.html
+lib/mcstas/monitors/Monitor_4PI.comp
 lib/mcstas/monitors/Monitor_4PI.html
+lib/mcstas/monitors/Monitor_nD.comp
 lib/mcstas/monitors/Monitor_nD.html
+lib/mcstas/monitors/PSD_monitor.comp
 lib/mcstas/monitors/PSD_monitor.html
+lib/mcstas/monitors/PSD_monitor_4PI.comp
 lib/mcstas/monitors/PSD_monitor_4PI.html
+lib/mcstas/monitors/PSDcyl_monitor.comp
 lib/mcstas/monitors/PSDcyl_monitor.html
+lib/mcstas/monitors/PSDlin_monitor.comp
 lib/mcstas/monitors/PSDlin_monitor.html
+lib/mcstas/monitors/PolLambda_monitor.comp
+lib/mcstas/monitors/PolLambda_monitor.html
+lib/mcstas/monitors/Pol_monitor.comp
+lib/mcstas/monitors/Pol_monitor.html
+lib/mcstas/monitors/PreMonitor_nD.comp
 lib/mcstas/monitors/PreMonitor_nD.html
+lib/mcstas/monitors/Res_monitor.comp
 lib/mcstas/monitors/Res_monitor.html
+lib/mcstas/monitors/TOF2E_monitor.comp
+lib/mcstas/monitors/TOF2E_monitor.html
+lib/mcstas/monitors/TOFLambda_monitor.comp
 lib/mcstas/monitors/TOFLambda_monitor.html
+lib/mcstas/monitors/TOF_cylPSD_monitor.comp
 lib/mcstas/monitors/TOF_cylPSD_monitor.html
+lib/mcstas/monitors/TOF_monitor.comp
 lib/mcstas/monitors/TOF_monitor.html
+lib/mcstas/monitors/TOFlog_mon.comp
 lib/mcstas/monitors/TOFlog_mon.html
 lib/mcstas/obsolete/Beamstop_circular.comp
 lib/mcstas/obsolete/Beamstop_rectangular.comp
 lib/mcstas/obsolete/Channeled_guide.comp
+lib/mcstas/obsolete/Chopper.comp
 lib/mcstas/obsolete/Circular_slit.comp
-lib/mcstas/obsolete/Convert_FlatE_2_Maxwell.comp
 lib/mcstas/obsolete/Curved_Monochromator.comp
 lib/mcstas/obsolete/Filter.comp
 lib/mcstas/obsolete/First_Chopper.comp
-lib/mcstas/obsolete/Flux_adapter.comp
 lib/mcstas/obsolete/Gravity_guide.comp
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-lib/mcstas/obsolete/Monochromator0.comp
 lib/mcstas/obsolete/Mosaic_anisotropic.comp
 lib/mcstas/obsolete/Mosaic_simple.comp
-lib/mcstas/obsolete/Soller.comp
-lib/mcstas/obsolete/PSD_bidim.comp
-lib/mcstas/obsolete/PSD_curved.comp
-lib/mcstas/obsolete/PSD_entry.comp
 lib/mcstas/obsolete/PSD_monitor_4PI_log.comp
-lib/mcstas/obsolete/Powder0.comp
 lib/mcstas/obsolete/Powder2.comp
 lib/mcstas/obsolete/Powder_filter.comp
+lib/mcstas/obsolete/Soller.comp
 lib/mcstas/obsolete/Soller_trans.comp
 lib/mcstas/obsolete/Source_Maxwell.comp
 lib/mcstas/obsolete/Source_file.comp
@@ -302,62 +486,79 @@ lib/mcstas/obsolete/Source_flat.comp
 lib/mcstas/obsolete/Source_flat_lambda.comp
 lib/mcstas/obsolete/Source_flux.comp
 lib/mcstas/obsolete/Source_flux_lambda.comp
-lib/mcstas/obsolete/window.comp
 lib/mcstas/optics/Arm.comp
-lib/mcstas/optics/Beamstop.comp
-lib/mcstas/optics/Bender.comp
-lib/mcstas/optics/Chopper.comp
-lib/mcstas/optics/Collimator_linear.comp
-lib/mcstas/optics/Collimator_radial.comp
-lib/mcstas/optics/FermiChopper.comp
-lib/mcstas/optics/Filter_gen.comp
-lib/mcstas/optics/Guide.comp
-lib/mcstas/optics/Guide_channeled.comp
-lib/mcstas/optics/Guide_gravity.comp
-lib/mcstas/optics/Guide_wavy.comp
-lib/mcstas/optics/Mirror.comp
-lib/mcstas/optics/Monochromator_curved.comp
-lib/mcstas/optics/Monochromator_flat.comp
-lib/mcstas/optics/Selector.comp
-lib/mcstas/optics/Slit.comp
-lib/mcstas/optics/V_selector.comp
-lib/mcstas/optics/Vitess_ChopperFermi.comp
 lib/mcstas/optics/Arm.html
+lib/mcstas/optics/Beamstop.comp
 lib/mcstas/optics/Beamstop.html
+lib/mcstas/optics/Bender.comp
 lib/mcstas/optics/Bender.html
-lib/mcstas/optics/Chopper.html
+lib/mcstas/optics/Collimator_linear.comp
 lib/mcstas/optics/Collimator_linear.html
+lib/mcstas/optics/Collimator_radial.comp
 lib/mcstas/optics/Collimator_radial.html
+lib/mcstas/optics/DiskChopper.comp
+lib/mcstas/optics/DiskChopper.html
+lib/mcstas/optics/FermiChopper.comp
 lib/mcstas/optics/FermiChopper.html
+lib/mcstas/optics/Filter_gen.comp
 lib/mcstas/optics/Filter_gen.html
+lib/mcstas/optics/Guide.comp
 lib/mcstas/optics/Guide.html
+lib/mcstas/optics/Guide_channeled.comp
 lib/mcstas/optics/Guide_channeled.html
+lib/mcstas/optics/Guide_gravity.comp
 lib/mcstas/optics/Guide_gravity.html
+lib/mcstas/optics/Guide_tapering.comp
+lib/mcstas/optics/Guide_tapering.html
+lib/mcstas/optics/Guide_wavy.comp
 lib/mcstas/optics/Guide_wavy.html
+lib/mcstas/optics/Mirror.comp
 lib/mcstas/optics/Mirror.html
+lib/mcstas/optics/Monochromator_curved.comp
 lib/mcstas/optics/Monochromator_curved.html
+lib/mcstas/optics/Monochromator_flat.comp
 lib/mcstas/optics/Monochromator_flat.html
+lib/mcstas/optics/Monochromator_pol.comp
+lib/mcstas/optics/Monochromator_pol.html
+lib/mcstas/optics/Pol_FieldBox.comp
+lib/mcstas/optics/Pol_FieldBox.html
+lib/mcstas/optics/Pol_bender.comp
+lib/mcstas/optics/Pol_bender.html
+lib/mcstas/optics/Pol_constBfield.comp
+lib/mcstas/optics/Pol_constBfield.html
+lib/mcstas/optics/Pol_guide_vmirror.comp
+lib/mcstas/optics/Pol_guide_vmirror.html
+lib/mcstas/optics/Pol_mirror.comp
+lib/mcstas/optics/Pol_mirror.html
+lib/mcstas/optics/Pol_simpleBfield.comp
+lib/mcstas/optics/Pol_simpleBfield.html
+lib/mcstas/optics/Selector.comp
 lib/mcstas/optics/Selector.html
+lib/mcstas/optics/Slit.comp
 lib/mcstas/optics/Slit.html
+lib/mcstas/optics/V_selector.comp
 lib/mcstas/optics/V_selector.html
+lib/mcstas/optics/Vitess_ChopperFermi.comp
 lib/mcstas/optics/Vitess_ChopperFermi.html
 lib/mcstas/samples/Isotropic_Sqw.comp
-lib/mcstas/samples/Phonon_simple.comp
-lib/mcstas/samples/Powder1.comp
-lib/mcstas/samples/PowderN.comp
-lib/mcstas/samples/Res_sample.comp
-lib/mcstas/samples/Sans_spheres.comp
-lib/mcstas/samples/Single_crystal.comp
-lib/mcstas/samples/TOFRes_sample.comp
-lib/mcstas/samples/V_sample.comp
 lib/mcstas/samples/Isotropic_Sqw.html
+lib/mcstas/samples/Phonon_simple.comp
 lib/mcstas/samples/Phonon_simple.html
+lib/mcstas/samples/Powder1.comp
 lib/mcstas/samples/Powder1.html
+lib/mcstas/samples/PowderN.comp
 lib/mcstas/samples/PowderN.html
+lib/mcstas/samples/Res_sample.comp
 lib/mcstas/samples/Res_sample.html
+lib/mcstas/samples/Sans_spheres.comp
 lib/mcstas/samples/Sans_spheres.html
+lib/mcstas/samples/Single_crystal.comp
 lib/mcstas/samples/Single_crystal.html
+lib/mcstas/samples/TOFRes_sample.comp
 lib/mcstas/samples/TOFRes_sample.html
+lib/mcstas/samples/Tunneling_sample.comp
+lib/mcstas/samples/Tunneling_sample.html
+lib/mcstas/samples/V_sample.comp
 lib/mcstas/samples/V_sample.html
 lib/mcstas/share/adapt_tree-lib.c
 lib/mcstas/share/adapt_tree-lib.h
@@ -365,41 +566,49 @@ lib/mcstas/share/chopper_fermi.c
 lib/mcstas/share/chopper_fermi.h
 lib/mcstas/share/general.c
 lib/mcstas/share/general.h
+lib/mcstas/share/interoff-lib.c
+lib/mcstas/share/interoff-lib.h
 lib/mcstas/share/intersection.c
 lib/mcstas/share/intersection.h
-lib/mcstas/share/mcstas-r.c
-lib/mcstas/share/mcstas-r.h
+lib/mcstas/%%DATADIR%%-r.c
+lib/mcstas/%%DATADIR%%-r.h
 lib/mcstas/share/monitor_nd-lib.c
 lib/mcstas/share/monitor_nd-lib.h
+lib/mcstas/share/nexus-lib.c
+lib/mcstas/share/nexus-lib.h
+lib/mcstas/share/pol-lib.c
+lib/mcstas/share/pol-lib.h
 lib/mcstas/share/read_table-lib.c
 lib/mcstas/share/read_table-lib.h
+lib/mcstas/share/ref-lib.c
+lib/mcstas/share/ref-lib.h
 lib/mcstas/share/vitess-lib.c
 lib/mcstas/share/vitess-lib.h
 lib/mcstas/sources/Adapt_check.comp
-lib/mcstas/sources/ESS_moderator_long.comp
-lib/mcstas/sources/ESS_moderator_short.comp
-lib/mcstas/sources/Moderator.comp
-lib/mcstas/sources/Monitor_Optimizer.comp
-lib/mcstas/sources/Source_Maxwell_3.comp
-lib/mcstas/sources/Source_Optimizer.comp
-lib/mcstas/sources/Source_adapt.comp
-lib/mcstas/sources/Source_div.comp
-lib/mcstas/sources/Source_gen.comp
-lib/mcstas/sources/Source_simple.comp
-lib/mcstas/sources/Virtual_input.comp
-lib/mcstas/sources/Virtual_output.comp
 lib/mcstas/sources/Adapt_check.html
+lib/mcstas/sources/ESS_moderator_long.comp
 lib/mcstas/sources/ESS_moderator_long.html
+lib/mcstas/sources/ESS_moderator_short.comp
 lib/mcstas/sources/ESS_moderator_short.html
+lib/mcstas/sources/Moderator.comp
 lib/mcstas/sources/Moderator.html
+lib/mcstas/sources/Monitor_Optimizer.comp
 lib/mcstas/sources/Monitor_Optimizer.html
+lib/mcstas/sources/Source_Maxwell_3.comp
 lib/mcstas/sources/Source_Maxwell_3.html
+lib/mcstas/sources/Source_Optimizer.comp
 lib/mcstas/sources/Source_Optimizer.html
+lib/mcstas/sources/Source_adapt.comp
 lib/mcstas/sources/Source_adapt.html
+lib/mcstas/sources/Source_div.comp
 lib/mcstas/sources/Source_div.html
+lib/mcstas/sources/Source_gen.comp
 lib/mcstas/sources/Source_gen.html
+lib/mcstas/sources/Source_simple.comp
 lib/mcstas/sources/Source_simple.html
+lib/mcstas/sources/Virtual_input.comp
 lib/mcstas/sources/Virtual_input.html
+lib/mcstas/sources/Virtual_output.comp
 lib/mcstas/sources/Virtual_output.html
 lib/mcstas/tools/matlab/CheckNeutNumber.m
 lib/mcstas/tools/matlab/CheckTimeout.m
@@ -408,32 +617,33 @@ lib/mcstas/tools/matlab/ReshapeTransform.m
 lib/mcstas/tools/matlab/mcdisplay.m
 lib/mcstas/tools/matlab/mcplot.m
 lib/mcstas/tools/matlab/resume.m
+lib/mcstas/tools/matlab/tomo_recon.m
 lib/mcstas/tools/matlab/wait.m
 lib/mcstas/tools/perl/mcfrontlib.pl
 lib/mcstas/tools/perl/mcfrontlib2D.pl
+lib/mcstas/tools/perl/mcgnuplot.pl
 lib/mcstas/tools/perl/mcguilib.pl
+lib/mcstas/tools/perl/mcoptimlib.pl
 lib/mcstas/tools/perl/mcplotlib.pl
 lib/mcstas/tools/perl/mcrunlib.pl
 lib/mcstas/tools/perl/mcstas_config.perl
 lib/mcstas/tools/perl/mcstas_config.perl.in
-lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Proc/Simple/.packlist
-lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Tk/CodeText/.packlist
-lib/mcstas/tools/perl/modules/auto/Proc/Simple/autosplit.ix
+lib/mcstas/tools/perl/mcstas_reconfigure
+lib/mcstas/tools/perl/mcstas_reconfigure.in
+lib/mcstas/tools/perl/modules/Math/Amoeba.pm
 lib/mcstas/tools/perl/modules/Proc/Simple.pm
-lib/mcstas/tools/perl/modules/Tk/RulesEditor.pm
 lib/mcstas/tools/perl/modules/Tk/CodeText.pm
 lib/mcstas/tools/perl/modules/Tk/CodeText.pod
 lib/mcstas/tools/perl/modules/Tk/CodeText/McStas.pm
-lib/mcstas/tools/perl/modules/Tk/CodeText/Xresources.pm
 lib/mcstas/tools/perl/modules/Tk/CodeText/None.pm
 lib/mcstas/tools/perl/modules/Tk/CodeText/Template.pm
-lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Proc::Simple.3
-lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::McStas.3
-lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::Xresources.3
-lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::None.3
-lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::Template.3
-lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText.3
+lib/mcstas/tools/perl/modules/Tk/CodeText/Xresources.pm
+lib/mcstas/tools/perl/modules/Tk/RulesEditor.pm
+lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Math/Amoeba/.packlist
+lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Proc/Simple/.packlist
+lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Tk/CodeText/.packlist
 lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/perllocal.pod
+lib/mcstas/tools/perl/modules/auto/Proc/Simple/autosplit.ix
 lib/mcstas/tools/scilab/mcdisplay.sci
 lib/mcstas/tools/scilab/mcplot.sci
 lib/mcstas/tools/scilab/plotlib/BUGS
@@ -451,6 +661,7 @@ lib/mcstas/tools/scilab/plotlib/macros/addPlot.sci
 lib/mcstas/tools/scilab/plotlib/macros/addPlot.sci.old
 lib/mcstas/tools/scilab/plotlib/macros/addPlot3.sci
 lib/mcstas/tools/scilab/plotlib/macros/axis.sci
+lib/mcstas/tools/scilab/plotlib/macros/bar.sci
 lib/mcstas/tools/scilab/plotlib/macros/blackbg.sci
 lib/mcstas/tools/scilab/plotlib/macros/bluecolormap.sci
 lib/mcstas/tools/scilab/plotlib/macros/bonecolormap.sci
@@ -475,6 +686,8 @@ lib/mcstas/tools/scilab/plotlib/macros/doThePlot3d1.sci
 lib/mcstas/tools/scilab/plotlib/macros/draw2DAxis.sci
 lib/mcstas/tools/scilab/plotlib/macros/eval3dPolygons.sci
 lib/mcstas/tools/scilab/plotlib/macros/fig.sci
+lib/mcstas/tools/scilab/plotlib/macros/fill.sci
+lib/mcstas/tools/scilab/plotlib/macros/findColorIndex.sci
 lib/mcstas/tools/scilab/plotlib/macros/fliplr.sci
 lib/mcstas/tools/scilab/plotlib/macros/flipud.sci
 lib/mcstas/tools/scilab/plotlib/macros/gcw.sci
@@ -503,6 +716,8 @@ lib/mcstas/tools/scilab/plotlib/macros/parametricDiffData.sci
 lib/mcstas/tools/scilab/plotlib/macros/parametricDiffDeriv.sci
 lib/mcstas/tools/scilab/plotlib/macros/parametricNormals.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseAxis.sci
+lib/mcstas/tools/scilab/plotlib/macros/parseBackFaceCulling.sci
+lib/mcstas/tools/scilab/plotlib/macros/parseBackFaceLighting.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseColor.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseColorBar.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseColormap.sci
@@ -515,6 +730,7 @@ lib/mcstas/tools/scilab/plotlib/macros/parseLight.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseMargin.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseScale.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseShading.sci
+lib/mcstas/tools/scilab/plotlib/macros/parseTicks.sci
 lib/mcstas/tools/scilab/plotlib/macros/parseView.sci
 lib/mcstas/tools/scilab/plotlib/macros/pcolor.sci
 lib/mcstas/tools/scilab/plotlib/macros/plot.sci
@@ -555,6 +771,7 @@ lib/mcstas/tools/scilab/plotlib/macros/ylabel.sci
 lib/mcstas/tools/scilab/plotlib/man/Plotlib.cat
 lib/mcstas/tools/scilab/plotlib/man/axis.cat
 lib/mcstas/tools/scilab/plotlib/man/background.cat
+lib/mcstas/tools/scilab/plotlib/man/bar.cat
 lib/mcstas/tools/scilab/plotlib/man/caxis.cat
 lib/mcstas/tools/scilab/plotlib/man/clf.cat
 lib/mcstas/tools/scilab/plotlib/man/colorbar.cat
@@ -592,10 +809,18 @@ lib/mcstas/tools/scilab/plotlib/man/whatis
 lib/mcstas/tools/scilab/plotlib/man/whitebg.cat
 lib/mcstas/tools/scilab/plotlib/man/xlabel.cat
 lib/mcstas/tools/scilab/plotlib/man/ylabel.cat
-lib/mcstas/index.html
-lib/mcstas/LGPL
-lib/mcstas/LICENSE.LIB
-lib/mcstas/README
+lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Math::Amoeba.3
+lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Proc::Simple.3
+lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText.3
+lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::McStas.3
+lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::None.3
+lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::Template.3
+lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3/Tk::CodeText::Xresources.3
+@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3
+@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man
+@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%
+@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%
+@dirrm lib/mcstas/tools/perl/modules/lib
 @dirrm lib/mcstas/tools/scilab/plotlib/man
 @dirrm lib/mcstas/tools/scilab/plotlib/macros
 @dirrm lib/mcstas/tools/scilab/plotlib
@@ -603,20 +828,18 @@ lib/mcstas/README
 @dirrm lib/mcstas/tools/perl/modules/auto/Proc/Simple
 @dirrm lib/mcstas/tools/perl/modules/auto/Proc
 @dirrm lib/mcstas/tools/perl/modules/auto
-@dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Proc/Simple
-@dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Proc
 @dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Tk/CodeText
 @dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Tk
+@dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Proc/Simple
+@dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Proc
+@dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Math/Amoeba
+@dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto/Math
 @dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%/auto
 @dirrm lib/mcstas/tools/perl/modules/%%PERL_ARCHNAME%%
-@dirrm lib/mcstas/tools/perl/modules/Proc
 @dirrm lib/mcstas/tools/perl/modules/Tk/CodeText
 @dirrm lib/mcstas/tools/perl/modules/Tk
-@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man/man3
-@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%/man
-@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%/%%PERL_VERSION%%
-@dirrm lib/mcstas/tools/perl/modules/lib/%%PERL_PORT%%
-@dirrm lib/mcstas/tools/perl/modules/lib
+@dirrm lib/mcstas/tools/perl/modules/Proc
+@dirrm lib/mcstas/tools/perl/modules/Math
 @dirrm lib/mcstas/tools/perl/modules
 @dirrm lib/mcstas/tools/perl
 @dirrm lib/mcstas/tools/matlab
@@ -637,5 +860,6 @@ lib/mcstas/README
 @dirrm lib/mcstas/data
 @dirrm lib/mcstas/contrib/doc
 @dirrm lib/mcstas/contrib/ISIS_tables
+@dirrm lib/mcstas/contrib/Gas_tables
 @dirrm lib/mcstas/contrib
 @dirrm lib/mcstas