Modular toolkit for Data Processing (MDP) is a Python data processing

framework. Implemented algorithms include: Principal Component
Analysis (PCA), Independent Component Analysis (ICA), Slow Feature
Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural
Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), Gaussian
Classifiers, and Restricted Boltzmann Machines.

WWW: http://mdp-toolkit.sourceforge.net/

PR:		ports/127338
Submitted by:	Li-Lun Wang <llwang at infor.org>

5 files changed, 167 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index ca306d307240..491ce1b1a034 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -101,6 +101,7 @@
     SUBDIR += pnetcdf
     SUBDIR += psi3
     SUBDIR += py-hcluster
+    SUBDIR += py-mdp
     SUBDIR += py-openbabel
     SUBDIR += py-paida
     SUBDIR += py-scipy
diff --git a/science/py-mdp/Makefile b/science/py-mdp/Makefile
new file mode 100644
index 000000000000..818d026aa140
--- /dev/null
+++ b/science/py-mdp/Makefile
@@ -0,0 +1,27 @@
+# Ports collection makefile for:	mdp
+# Date created:				September 9, 2008
+# Whom:					Li-Lun Wang <llwang@infor.org>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	mdp
+PORTVERSION=	2.3
+CATEGORIES=	science python
+MASTER_SITES=	${MASTER_SITE_SOURCEFORGE}
+MASTER_SITE_SUBDIR=	mdp-toolkit
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+DISTNAME=	${PORTNAME:U}-${PORTVERSION}
+
+MAINTAINER=	llwang@infor.org
+COMMENT=	Modular toolkit for Data Processing
+
+RUN_DEPENDS=	${PYNUMPY} \
+		${PYTHON_SITELIBDIR}/scipy/__init__.py:${PORTSDIR}/science/py-scipy \
+		${PYTHON_SITELIBDIR}/symeig/__init__.py:${PORTSDIR}/math/py-symeig
+
+USE_PYTHON=	2.4+
+USE_PYDISTUTILS=	yes
+PYDISTUTILS_EGGINFO=	${PYDISTUTILS_PKGNAME:C/[^A-Za-z0-9.]+/_/g:U}-${PYDISTUTILS_PKGVERSION:C/[^A-Za-z0-9.]+/_/g}-${PYTHON_VERSION:S/thon//}.egg-info
+
+.include <bsd.port.mk>
diff --git a/science/py-mdp/distinfo b/science/py-mdp/distinfo
new file mode 100644
index 000000000000..b63ceaefe20e
--- /dev/null
+++ b/science/py-mdp/distinfo
@@ -0,0 +1,3 @@
+MD5 (MDP-2.3.tar.gz) = 63b66bc4b787aebe5291869f5286e4bf
+SHA256 (MDP-2.3.tar.gz) = e5e78670d211e1ca8ad48305fd17af141df60e830e3816a4fa00d4d5ce5318fa
+SIZE (MDP-2.3.tar.gz) = 133071
diff --git a/science/py-mdp/pkg-descr b/science/py-mdp/pkg-descr
new file mode 100644
index 000000000000..fc4b2bd6c4c7
--- /dev/null
+++ b/science/py-mdp/pkg-descr
@@ -0,0 +1,8 @@
+Modular toolkit for Data Processing (MDP) is a Python data processing
+framework. Implemented algorithms include: Principal Component
+Analysis (PCA), Independent Component Analysis (ICA), Slow Feature
+Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural
+Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), Gaussian
+Classifiers, and Restricted Boltzmann Machines.
+
+WWW: http://mdp-toolkit.sourceforge.net/
diff --git a/science/py-mdp/pkg-plist b/science/py-mdp/pkg-plist
new file mode 100644
index 000000000000..3861e9120c9a
--- /dev/null
+++ b/science/py-mdp/pkg-plist
@@ -0,0 +1,128 @@
+%%PYTHON_SITELIBDIR%%/mdp/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/contrib/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/contrib/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/contrib/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/contrib/jade.py
+%%PYTHON_SITELIBDIR%%/mdp/contrib/jade.pyc
+%%PYTHON_SITELIBDIR%%/mdp/contrib/jade.pyo
+%%PYTHON_SITELIBDIR%%/mdp/contrib/nipals.py
+%%PYTHON_SITELIBDIR%%/mdp/contrib/nipals.pyc
+%%PYTHON_SITELIBDIR%%/mdp/contrib/nipals.pyo
+%%PYTHON_SITELIBDIR%%/mdp/demo/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/demo/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/demo/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/demo/demo.py
+%%PYTHON_SITELIBDIR%%/mdp/demo/demo.pyc
+%%PYTHON_SITELIBDIR%%/mdp/demo/demo.pyo
+%%PYTHON_SITELIBDIR%%/mdp/graph/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/graph/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/graph/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/graph/graph.py
+%%PYTHON_SITELIBDIR%%/mdp/graph/graph.pyc
+%%PYTHON_SITELIBDIR%%/mdp/graph/graph.pyo
+%%PYTHON_SITELIBDIR%%/mdp/helper_funcs.py
+%%PYTHON_SITELIBDIR%%/mdp/helper_funcs.pyc
+%%PYTHON_SITELIBDIR%%/mdp/helper_funcs.pyo
+%%PYTHON_SITELIBDIR%%/mdp/hinet/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/hinet/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/hinet/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/hinet/hinet.py
+%%PYTHON_SITELIBDIR%%/mdp/hinet/hinet.pyc
+%%PYTHON_SITELIBDIR%%/mdp/hinet/hinet.pyo
+%%PYTHON_SITELIBDIR%%/mdp/hinet/hinet_html.py
+%%PYTHON_SITELIBDIR%%/mdp/hinet/hinet_html.pyc
+%%PYTHON_SITELIBDIR%%/mdp/hinet/hinet_html.pyo
+%%PYTHON_SITELIBDIR%%/mdp/linear_flows.py
+%%PYTHON_SITELIBDIR%%/mdp/linear_flows.pyc
+%%PYTHON_SITELIBDIR%%/mdp/linear_flows.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/em_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/em_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/em_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/expansion_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/expansion_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/expansion_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/fda_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/fda_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/fda_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/ica_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/ica_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/ica_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/isfa_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/isfa_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/isfa_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/misc_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/misc_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/misc_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/neural_gas_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/neural_gas_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/neural_gas_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/pca_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/pca_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/pca_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/rbm_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/rbm_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/rbm_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/nodes/sfa_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/nodes/sfa_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/nodes/sfa_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/signal_node.py
+%%PYTHON_SITELIBDIR%%/mdp/signal_node.pyc
+%%PYTHON_SITELIBDIR%%/mdp/signal_node.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/test/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/benchmark_mdp.py
+%%PYTHON_SITELIBDIR%%/mdp/test/benchmark_mdp.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/benchmark_mdp.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/test_contrib.py
+%%PYTHON_SITELIBDIR%%/mdp/test/test_contrib.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/test_contrib.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/test_flows.py
+%%PYTHON_SITELIBDIR%%/mdp/test/test_flows.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/test_flows.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/test_graph.py
+%%PYTHON_SITELIBDIR%%/mdp/test/test_graph.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/test_graph.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/test_hinet.py
+%%PYTHON_SITELIBDIR%%/mdp/test/test_hinet.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/test_hinet.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/test_nodes.py
+%%PYTHON_SITELIBDIR%%/mdp/test/test_nodes.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/test_nodes.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/test_utils.py
+%%PYTHON_SITELIBDIR%%/mdp/test/test_utils.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/test_utils.pyo
+%%PYTHON_SITELIBDIR%%/mdp/test/testing_tools.py
+%%PYTHON_SITELIBDIR%%/mdp/test/testing_tools.pyc
+%%PYTHON_SITELIBDIR%%/mdp/test/testing_tools.pyo
+%%PYTHON_SITELIBDIR%%/mdp/utils/__init__.py
+%%PYTHON_SITELIBDIR%%/mdp/utils/__init__.pyc
+%%PYTHON_SITELIBDIR%%/mdp/utils/__init__.pyo
+%%PYTHON_SITELIBDIR%%/mdp/utils/covariance.py
+%%PYTHON_SITELIBDIR%%/mdp/utils/covariance.pyc
+%%PYTHON_SITELIBDIR%%/mdp/utils/covariance.pyo
+%%PYTHON_SITELIBDIR%%/mdp/utils/introspection.py
+%%PYTHON_SITELIBDIR%%/mdp/utils/introspection.pyc
+%%PYTHON_SITELIBDIR%%/mdp/utils/introspection.pyo
+%%PYTHON_SITELIBDIR%%/mdp/utils/progress_bar.py
+%%PYTHON_SITELIBDIR%%/mdp/utils/progress_bar.pyc
+%%PYTHON_SITELIBDIR%%/mdp/utils/progress_bar.pyo
+%%PYTHON_SITELIBDIR%%/mdp/utils/quad_forms.py
+%%PYTHON_SITELIBDIR%%/mdp/utils/quad_forms.pyc
+%%PYTHON_SITELIBDIR%%/mdp/utils/quad_forms.pyo
+%%PYTHON_SITELIBDIR%%/mdp/utils/routines.py
+%%PYTHON_SITELIBDIR%%/mdp/utils/routines.pyc
+%%PYTHON_SITELIBDIR%%/mdp/utils/routines.pyo
+@dirrm %%PYTHON_SITELIBDIR%%/mdp/utils
+@dirrm %%PYTHON_SITELIBDIR%%/mdp/test
+@dirrm %%PYTHON_SITELIBDIR%%/mdp/nodes
+@dirrm %%PYTHON_SITELIBDIR%%/mdp/hinet
+@dirrm %%PYTHON_SITELIBDIR%%/mdp/graph
+@dirrm %%PYTHON_SITELIBDIR%%/mdp/demo
+@dirrm %%PYTHON_SITELIBDIR%%/mdp/contrib
+@dirrm %%PYTHON_SITELIBDIR%%/mdp