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* - Update to 3.1.1wen2018-12-292-5/+4
* Add USE_CSTD=c99 to fix build with base GCC, which uses c89 by default.linimon2018-12-261-1/+2
* Update math/eigen3 to 3.3.7tcberner2018-12-2610-8/+10
* Change cmake default behaviour to outsource.tcberner2018-12-2658-58/+58
* Add new port science/scidavis:makc2018-12-249-0/+203
* science/ghemical: fix build with GCC-based architecturesyuri2018-12-241-1/+1
* After the upgrade to GCC 8, there's a new error: HDF_NO_UBSAN needslinimon2018-12-242-1/+112
* science/py-lifelines: update to 0.15.4rm2018-12-222-4/+4
* science/erkale: BROKEN on i386yuri2018-12-221-0/+2
* science/pcmsolver: Unbreak: supply the minimal CMAKE_EXE_LINKER_FLAGSyuri2018-12-221-3/+9
* science/drawxtl: Unbreak on non-64-bit architecturesyuri2018-12-221-1/+6
* This port needs USES=compiler:c++11-lang to build on GCC-basedlinimon2018-12-221-3/+4
* This port needs a newer GCC to build, so add USES=compiler:c++11-langlinimon2018-12-221-3/+5
* This port currently doesn't build on GCC-based architectures, due tolinimon2018-12-221-0/+12
* science/vipster: Fix mistake in the BROKEN statementyuri2018-12-211-1/+1
* New port: science/vipster: Crystalline and molecular structure visualisation ...yuri2018-12-216-0/+93
* science/py-gsd: Update 1.5.5 -> 1.6.0yuri2018-12-212-5/+4
* science/qmcpack: Update 3.5.0 -> 3.6.0yuri2018-12-212-7/+6
* science/tinker: Fix build on non-Intel architectures by adding SSE flags base...yuri2018-12-212-2/+19
* science/xdrawchem: Fix build with GCC-based architecturesyuri2018-12-211-1/+1
* science/py-scikit-learn: update to 0.20.2rm2018-12-202-5/+4
* science/agrum: Add forgottrn patchyuri2018-12-201-0/+11
* science/agrum: Add OPENMP optionyuri2018-12-201-7/+13
* science/agrum: Add Python binding; Add ODBC optionyuri2018-12-202-1/+37
* New port: science/agrum: Graphical modeler for Bayesian networks, influence d...yuri2018-12-205-0/+881
* science/jdftx: fix build with GCC-based architecturesyuri2018-12-201-1/+1
* - Update to 3.8wen2018-12-193-25/+13
* science/pcmsolver: Unbreakyuri2018-12-192-5/+16
* New port: science/h5z-zfp: Registered ZFP compression plugin for HDF5yuri2018-12-195-0/+101
* Mark BROKEN: fails to buildantoine2018-12-191-0/+1
* science/qwalk: Fix build with GCC-based architecturesyuri2018-12-181-1/+1
* New port: science/py-GPyOpt: Bayesian optimization toolbox based on GPyyuri2018-12-184-0/+41
* New port: science/py-GPy: Gaussian process toolboxyuri2018-12-184-0/+37
* New port: science/py-paramz: Parameterization frameworkyuri2018-12-184-0/+46
* science/mpqc: Change net/mpich2 -> net/mpichyuri2018-12-182-4/+10
* science/libghemical: fix build with GCC-based architecturesyuri2018-12-181-10/+7
* science/dalton: Update 2016.2 -> 2018.0yuri2018-12-176-40/+39
* New port: science/drawxtl: Crystal structure visualization toolyuri2018-12-175-0/+90
* science/erkale: Please approve flavorization: serial and parallelyuri2018-12-163-104/+139
* science/yoda: Update 1.7.3 -> 1.7.4yuri2018-12-162-5/+5
* science/mmdb2: Update 2.0.16 -> 2.0.19yuri2018-12-163-5/+5
* Update KDE Applications to 18.12.0tcberner2018-12-146-17/+6
* science/octopus: Update 8.2 -> 8.3yuri2018-12-143-5/+6
* science/lammps: Update 22Aug2018 -> 12Dec2018yuri2018-12-143-153/+153
* science/yoda: Fix build with GCC-based architecturesyuri2018-12-141-1/+1
* science/py-lifelines: update to 0.15.3rm2018-12-142-6/+6
* Bump PORTREVISION for ports depending on the canonical version of GCCgerald2018-12-12176-112/+176
* devel/boost-*: update to 1.69.0jbeich2018-12-1221-12/+21
* Unbreakantoine2018-12-121-1/+1
* Remove expired ports:rene2018-12-117-94/+0
* science/openbabel: fix build with GCC-based architecturesyuri2018-12-111-4/+7
* - Update to 3.0.4.stephen2018-12-102-4/+4
* Update to 0.1.0sunpoet2018-12-102-6/+7
* Release maintainership.kwm2018-12-091-1/+1
* science/py-pymatgen: Update 2018.9.1 -> 2018.9.30yuri2018-12-092-4/+4
* science/spglib: Update 1.11.1.2 -> 1.11.2yuri2018-12-092-4/+4
* Fix build with Python 3sunpoet2018-12-081-0/+2
* science/atompaw: Update 4.1.0.4 -> 4.1.0.5yuri2018-12-072-7/+7
* science/bagel: Update 1.2.0 -> 1.2.1yuri2018-12-072-4/+6
* science/nwchem: fix build on powerpc64yuri2018-12-072-1/+6
* Now builds on powerpc64.linimon2018-12-071-2/+0
* Add py-pygeodesy 18.11.12sunpoet2018-12-074-0/+29
* science/coordgenlibs: Update 1.1 -> 1.2yuri2018-12-063-5/+9
* science/py-chempy: Update 0.7.6 -> 0.7.7yuri2018-12-062-4/+4
* New port: math/latte-integrale: Software for counting lattice points/integrat...yuri2018-12-061-0/+2
* - Remove unneeded MASTER_SITESamdmi32018-12-061-1/+0
* - Use MANPREFIXamdmi32018-12-051-1/+1
* science/libgridxc: Update 0.8.3 -> 0.8.4yuri2018-12-052-4/+4
* Upgrade to v0.9.9.thierry2018-12-046-66/+96
* Update devel/protobuf to 3.6.1sunpoet2018-12-042-3/+4
* Mark QT4 ports/functionality for removal on 2019-03-15rene2018-12-029-2/+41
* USES=compiler:c++11-lang is necessary to fix build on GCC-basedlinimon2018-12-021-1/+1
* Update to 1.1.0sunpoet2018-12-013-16/+4
* Use PYNUMPYsunpoet2018-12-011-1/+1
* science/py-gsd: Update 1.5.4 -> 1.5.5yuri2018-12-012-4/+4
* Upgrade to v5.3.1.thierry2018-12-013-16/+5
* Fix gemspec for rubygem-rgeo 2.0.0 updatesunpoet2018-12-012-2/+15
* Update to 2.0.0sunpoet2018-12-012-7/+8
* Update to 2.0.0sunpoet2018-12-012-4/+4
* science/py-pyteomics:makc2018-11-302-6/+5
* Update to 2.1.1sunpoet2018-11-302-6/+7
* Update to 2.1.0sunpoet2018-11-292-4/+4
* science/kst2:makc2018-11-284-27/+28
* science/rmf: fix build with GCC-based architecturesyuri2018-11-281-1/+1
* science/py-scikit-learn: Update 0.19.2 -> 0.20.1yuri2018-11-282-4/+10
* Fix build on powerpc64sunpoet2018-11-281-1/+3
* science/yoda: Move shebangfix to the proper placeyuri2018-11-271-2/+2
* science/yoda: Fix license; Remove stray dependencyyuri2018-11-271-4/+2
* New port: science/yoda: Particle physics package with classes for data analys...yuri2018-11-275-0/+109
* Release maintainership.kwm2018-11-241-1/+1
* science/libcint: Update 3.0.13 -> 3.0.14yuri2018-11-242-4/+4
* science/metaphysicl: Update 0.3.2 -> 0.3.3yuri2018-11-234-10/+8
* - Update to 1.2.1wen2018-11-232-4/+4
* pyqt: Change install directories for Python flavor supporttcberner2018-11-234-3/+4
* science/quantum-espresso: Remove pseudopotentialsyuri2018-11-224-193/+7
* New port: science/quantum-espresso-pseudopotentials: Pseudopotentials for use...yuri2018-11-226-0/+75
* science/gpaw-setups: Update 0.9.11271 -> 0.9.20000yuri2018-11-212-4/+4
* science/py-spglib: Update 1.10.4.11 -> 1.11.1yuri2018-11-212-4/+5
* science/spglib: Update 1.11.1 -> 1.11.1.2yuri2018-11-212-4/+4
* New port: science/berkeleygw: Scientific program aimed at the ab initio virtu...yuri2018-11-209-0/+479
* Change the way *_DEPENDS are setsunpoet2018-11-181-4/+5
* New port: science/opensim-core: Software for modeling of musculoskeletal stru...yuri2018-11-168-0/+470
* New port: science/simbody: Multibody dynamics library for (bio)mechanical sys...yuri2018-11-155-0/+287
* math/libxsmm: Update 1.9 -> 1.10yuri2018-11-151-0/+1
* science/libgridxc: Update 0.8.0 -> 0.8.3yuri2018-11-153-12/+9
* science/gromacs: Update 2018.3 -> 2018.4yuri2018-11-153-7/+6
* science/metaphysicl: Update 0.3.1 -> 0.3.2yuri2018-11-153-5/+5
* Change to my FreeBSD mailing address for two remaining ports.jmd2018-11-151-1/+1
* science/spglib: Update 1.10.4 -> 1.11.1yuri2018-11-152-4/+4
* science/py-ase: Update 3.16.2 -> 3.17.0yuri2018-11-153-5/+6
* Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regressionrm2018-11-144-0/+30
* - Take maintainership of devel/gdcm.stephen2018-11-131-1/+1
* science/lammps: BROKEN on i386yuri2018-11-121-3/+2
* New port: science/sparta: Gas simulator: SPARTA DSMC software packageyuri2018-11-125-0/+76
* science/py-scikit-sparse: Update 0.4.3 -> 0.4.4yuri2018-11-123-6/+5
* science/py-MDAnalysisTests/: Update 0.19.0 -> 0.19.2yuri2018-11-122-4/+4
* science/py-MDAnalysis: Update 0.19.0 -> 0.19.2yuri2018-11-122-6/+7
* - Update math/armadillo to 9.200.4danilo2018-11-111-0/+1
* Update ImageMagick to 6.9.10.14 [1]kwm2018-11-111-2/+2
* Install texinfo files (GNU info) into ${PREFIX}/share/infobapt2018-11-111-1/+1
* science/nwchem: Fix build on 32-bit systemsyuri2018-11-101-3/+3
* science/kalzium: switch to depend on science/avogadrolibstcberner2018-11-102-5/+9
* Update KDE Applications to 18.09.3tcberner2018-11-102-6/+6
* science/avogadrolibs: Update 1.91.0-107 -> 1.92.0yuri2018-11-093-13/+20
* science/nwchem: Unbreak on i386: use NWCHEM_TARGET=LINUX on 32-bit architecturesyuri2018-11-091-3/+2
* Upgrade science/hdf5-18 to 1.8.21.thierry2018-11-093-15/+17
* On i386, OpenMP seems incompatible with libatomic.thierry2018-11-091-0/+7
* science/nwchem: Update to the latest revision: 6.8.1-release-144 -> 6.8.1.201...yuri2018-11-083-5/+6
* science/lammps: Add port options for additional functionalityyuri2018-11-072-9/+48
* multimedia/ffmpeg: update to 4.1jbeich2018-11-061-0/+1
* Add compiler:c++11-lang to USES to fix build on gcc-based archs.linimon2018-11-061-1/+1
* Drop remaining BROKEN_FreeBSD_10 per EOL after r483807jbeich2018-11-051-1/+0
* New port: science/esys-particle: Particle-based numerical modelling softwareyuri2018-11-059-0/+112
* Merge lang/qt5-qml and x11-toolkits/qt5-quick into x11-toolkits/qt5-declarativetcberner2018-11-052-2/+4
* science/dalton: Fix build with GCC8yuri2018-11-052-3/+7
* science/xcrysden: Fix GCC 8 build failure (update patch)yuri2018-11-052-11/+15
* science/xcrysden: Fix GCC 8 build failureyuri2018-11-052-2/+15
* bft, ecs, fvm, mei and ncs have been merged to code_saturne.thierry2018-11-051-5/+1
* bft, ecs, fvm, mei and ncs have been merged to code_saturne.thierry2018-11-0535-1474/+1518
* science/voro++: Add shared libraryjwb2018-11-046-17/+164
* science/liggghts: Set VTK_DIR to prevent conflicts with other vtk versionsyuri2018-11-041-1/+2
* science/liggghts: Move headers to the dedicated subdirectoryyuri2018-11-043-448/+454
* New port: science/liggghts: Discrete element method particle simulation softwareyuri2018-11-0410-0/+667
* science/pulseview: Update to version 0.4.1bsam2018-11-032-6/+6
* science/sigrok-cli: Update to version 0.7.1bsam2018-11-032-6/+11
* Remove compatibility code for FreeBSD < 11.2 from all ports.rene2018-11-026-9/+1
* New port: science/latte: Quantum chemistry: Density functional tight binding ...yuri2018-11-014-0/+60
* - Add LICENSEamdmi32018-10-301-0/+3
* science/chemps2: Update 1.8.8 -> 1.8.9yuri2018-10-302-4/+4
* science/py-gpaw: Add pkg-message; Add LICENSE_FILE; Change /usr/local to LOCA...yuri2018-10-302-1/+12
* New port: science/gpaw-setups: Setups (data files) for py-gpaw, the DFT quant...yuri2018-10-304-0/+38
* Fix typo in previous commit.linimon2018-10-291-1/+1
* science/py-chempy: Update 0.7.5 -> 0.7.6yuri2018-10-292-7/+10
* science/bagel: Update 1.1.2-21 -> 1.2.0yuri2018-10-292-6/+4
* Fix build with GCC-based architectures.linimon2018-10-281-1/+1
* science/kalzium-kde4: Fix buildyuri2018-10-284-5/+71
* Fix build with GCC-based architectures for various kde@ ports.tcberner2018-10-271-1/+6
* New port: science/coordgenlibs: Schrodinger-developed 2D coordinate generationyuri2018-10-255-0/+53
* New port: science/maeparser: Parser for Schrodinger Maestro filesyuri2018-10-255-0/+40
* science/rdkit: Update 2018_03_4 -> 2018_09_1yuri2018-10-255-16/+90
* - Update to 3.0.3.stephen2018-10-242-4/+4
* science/avogadro: Add CONFLICTS statementyuri2018-10-241-0/+2
* New port: science/molsketch: 2D molecule editoryuri2018-10-249-0/+191
* New port: science/erkale: Quantum chemistry program to solve the electronic s...yuri2018-10-226-0/+156
* New port: science/py-avogadrolibs: Python bindings for Avogadro2 chemistry li...yuri2018-10-225-0/+55
* science/libxc: Update 3.0.0 -> 4.2.3yuri2018-10-2112-30/+37
* science/avogadro: Update 1.1.1 -> 1.2.0yuri2018-10-2110-92/+157
* science/chemtool: fix build with GCC-based architecturesyuri2018-10-211-1/+1
* science/PETSc: Update 3.10.1 -> 3.10.2yuri2018-10-212-4/+4
* science/py-chempy: Update 0.7.4 -> 0.7.5yuri2018-10-202-4/+4
* science/hypre: Update 2.15.0 -> 2.15.1yuri2018-10-202-5/+5
* science/simlib: Update 3.02 -> 3.06yuri2018-10-193-18/+8
* science/py-chempy: Update 0.7.3 -> 0.7.4yuri2018-10-192-4/+4
* science/py-scikit-fuzzy: Update 0.3.1 -> 0.4.0yuri2018-10-192-5/+4
* science/avogadrolibs: Update 1.91.0 -> 1.91.0-107yuri2018-10-199-51/+11
* science/metaphysicl: Update 0.3.0.1 -> 0.3.1yuri2018-10-192-4/+4
* New port: science/mmtf: C++ implementation of the MMTF API, decoder and encoderyuri2018-10-195-0/+72
* Sscience/luscus: Update 0.8.5 -> 0.8.6yuri2018-10-183-5/+4
* science/cgnslib: Update to 3.3.1 and modernizejrm2018-10-1810-86/+58
* science/py-PyFR: Update 1.7.6 -> 1.8.0yuri2018-10-172-5/+4
* science/py-phonopy: Fix testsyuri2018-10-171-2/+2
* science/avogadrolibs: Add optionsyuri2018-10-172-142/+182
* New port: science/avogadro2: Chemical editor and visualization applicationyuri2018-10-174-0/+58
* New port: science/avogadrolibs: Avogadro2 libraries for chemical editor and v...yuri2018-10-1712-0/+351
* New port: science/libmsym: Molecular point group symmetry libraryyuri2018-10-175-0/+49
* science/gamess-us: Cosmetic change: internal version number change to 00 for ...yuri2018-10-152-3/+8
* New port: science/wxmacmolplt: Graphical user interface principally for the G...yuri2018-10-155-0/+84
* science/gamess-us: Add math library selection optionsyuri2018-10-152-2/+48
* Re-add port: science/gamess-us: General Atomic and Molecular Electronic Struc...yuri2018-10-1414-0/+729
* - Update pkg-descrwen2018-10-131-8/+2
* Fix packaging with python 3.xantoine2018-10-121-105/+105
* science/py-MDAnalysisTests: Update 0.18.0 -> 0.19.0yuri2018-10-122-4/+4
* science/py-MDAnalysis: Update 0.18.0 -> 0.19.0yuri2018-10-122-4/+4
* Update to 1.1.2sunpoet2018-10-122-5/+5
* Update KDE Applications to 18.08.2tcberner2018-10-122-6/+6
* Update devel/tbb to version 2019.1 and bump dependent ports' revisionsmartymac2018-10-111-1/+1
* science/simint: Update 0.7 -> 0.8yuri2018-10-113-5/+17
* - Update to 0.110wen2018-10-102-4/+4
* Update to 4.4.0cs2018-10-103-834/+109
* - Add LICENSEamdmi32018-10-091-0/+4
* science/nwchem: Update 6.8.1-release-94 -> 6.8.1-release-144yuri2018-10-094-13/+6
* science/hypre: Update 2.11.2 -> 2.15.0yuri2018-10-094-31/+24
* science/hypre: Take maintainershipyuri2018-10-091-1/+1
* - Update to 1.2.0wen2018-10-082-4/+4
* New port: science/simint: Obara-Saika (OS) method of calculating electron rep...yuri2018-10-085-0/+94
* - Update to 3.23wen2018-10-082-5/+5
* New port: science/molgif: Tool to create GIF animations of moleculesyuri2018-10-084-0/+38
* Deprecate some GNOME 2 applicationsantoine2018-10-081-0/+3
* biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/yuri2018-10-078-0/+565
* Mark BROKEN: conflicting dependenciesantoine2018-10-071-0/+2
* Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, exceptdes2018-10-066-12/+12
* Update MASTER_SITESsunpoet2018-10-061-1/+1
* science/nwchem: Remove the wrapper script with LD_PRELOAD, achieve the same b...yuri2018-10-063-9/+14
* science/py-gsd: Update 1.5.3 -> 1.5.4yuri2018-10-062-4/+4
* - Add LICENSEamdmi32018-10-051-0/+3
* science/dftbplus science/mbdyn science/octopus: Change from math/arpack to ma...yuri2018-10-053-5/+6
* Update devel/tbb to version 2019 and bump dependent port's revisionsmartymac2018-10-041-1/+1
* science/PETSc: Update 3.9.4->3.10.1; math/py-petsc4py: Update 3.9.1->3.10.0; ...yuri2018-10-033-6/+24
* science/gnudatalanguage: Change from net/mpich2 to net/mpichyuri2018-10-031-6/+7
* science/fvm: Change from net/mpich2 to net/mpichyuri2018-10-031-4/+4
* science/bagel: Mark BROKEN on 10yuri2018-10-031-0/+1
* Cleanup plistsantoine2018-10-011-62/+62
* Cleanup plistantoine2018-10-011-297/+297
* science/fsom: Fix build on GCC-based architecturesjwb2018-10-011-0/+1
* science/bagel: Fix build on 10yuri2018-10-011-1/+2
* science/chemps2: Update 1.8.7 -> 1.8.8yuri2018-09-282-5/+4
* textproc/py-pygments and science/paraview conflict each otheryuri2018-09-281-0/+2
* Mark BROKEN: wrong LIB_DEPENDSantoine2018-09-272-0/+3
* science/clipper: Update 2.1.20180526 -> 2.1.20180802yuri2018-09-273-6/+5
* Update Objective-C LLVM version to 6.0.brooks2018-09-263-3/+3
* science/bagel: Correctionyuri2018-09-261-3/+3
* science/bagel: Remove the unnecessary line.yuri2018-09-261-1/+0
* New port: science/bagel: Brilliantly Advanced General Electronic-structure Li...yuri2018-09-266-0/+137
* Change from MPICH2 to MPICH optionsunpoet2018-09-241-4/+4
* science/hypre: Change from net/mpich2 to net/mpichyuri2018-09-241-7/+8
* New port: science/elk: All-electron full-potential linearised augmented-plane...yuri2018-09-237-0/+102
* science/cp2k: Change from net/mpich2 -> net/mpichyuri2018-09-231-2/+4
* Change 10 ports from net/mpich2 to net/mpichyuri2018-09-232-4/+7
* Change 20 ports from net/mpich2 to net/mpichyuri2018-09-2315-29/+40
* Update ilmbase and openexr to 2.3.0, rename OpenEXR to openexr.mandree2018-09-221-1/+2
* science/py-PyFR: Update dependencies: move one under the option option, add a...yuri2018-09-221-5/+6
* Fix build on gcc-based archs by updating USES.linimon2018-09-221-2/+1
* science/py-PyFR: Fix the OpenMP computation mode by adding -I and -L flags to...yuri2018-09-222-5/+20
* science/py-chempy: python2 is deprecated for this version of chempy.yuri2018-09-221-2/+1
* science/py-chempy: Update 0.7.2 -> 0.7.3yuri2018-09-212-4/+18
* New port: science/py-PyFR: Framework for solving advection-diffusion type pro...yuri2018-09-214-0/+65
* Update to 1.4.0sunpoet2018-09-212-6/+7
* Update to 1.4.0sunpoet2018-09-212-6/+7
* science/atompaw: Update 4.1.0.3 -> 4.1.0.4yuri2018-09-202-5/+4
* science/py-chempy: Fix typosyuri2018-09-202-2/+2
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