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authorgerald <gerald@FreeBSD.org>2014-09-11 04:50:31 +0800
committergerald <gerald@FreeBSD.org>2014-09-11 04:50:31 +0800
commitc830042769f26309b16e0b0ace05fc30fec7b236 (patch)
treed1ac4f6805fbce1473116cae6a211aa3cabd466c /science
parent80f8761d42bc33f770b1c64becc0f409ed9f8fd8 (diff)
downloadfreebsd-ports-gnome-c830042769f26309b16e0b0ace05fc30fec7b236.tar.gz
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Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit)
Diffstat (limited to 'science')
-rw-r--r--science/R-cran-AMORE/Makefile2
-rw-r--r--science/R-cran-DCluster/Makefile2
-rw-r--r--science/R-cran-Epi/Makefile2
-rw-r--r--science/R-cran-bayesm/Makefile2
-rw-r--r--science/R-cran-e1071/Makefile1
-rw-r--r--science/R-cran-eco/Makefile2
-rw-r--r--science/R-cran-epicalc/Makefile2
-rw-r--r--science/R-cran-snow/Makefile2
-rw-r--r--science/R-cran-som/Makefile2
-rw-r--r--science/afni/Makefile2
-rw-r--r--science/avogadro/Makefile2
-rw-r--r--science/brian/Makefile2
-rw-r--r--science/cdf/Makefile2
-rw-r--r--science/cgnslib/Makefile2
-rw-r--r--science/dcl/Makefile1
-rw-r--r--science/dlpoly-classic/Makefile2
-rw-r--r--science/ecs/Makefile2
-rw-r--r--science/elmer-eio/Makefile2
-rw-r--r--science/elmer-matc/Makefile2
-rw-r--r--science/fvcom-mpi/Makefile2
-rw-r--r--science/fvcom/Makefile2
-rw-r--r--science/fvm/Makefile2
-rw-r--r--science/gchemutils/Makefile2
-rw-r--r--science/getdp/Makefile2
-rw-r--r--science/ghemical/Makefile2
-rw-r--r--science/gnudatalanguage/Makefile2
-rw-r--r--science/gramps/Makefile2
-rw-r--r--science/gromacs/Makefile2
-rw-r--r--science/gtamsanalyzer/Makefile2
-rw-r--r--science/gwyddion/Makefile2
-rw-r--r--science/harminv/Makefile2
-rw-r--r--science/hdf/Makefile2
-rw-r--r--science/hs-bio/Makefile1
-rw-r--r--science/isaac-cfd/Makefile2
-rw-r--r--science/kalzium/Makefile2
-rw-r--r--science/kst2/Makefile2
-rw-r--r--science/lamprop/Makefile1
-rw-r--r--science/libctl/Makefile2
-rw-r--r--science/libghemical/Makefile2
-rw-r--r--science/liboglappth/Makefile2
-rw-r--r--science/mbdyn/Makefile1
-rw-r--r--science/medit/Makefile2
-rw-r--r--science/meep/Makefile2
-rw-r--r--science/mpb/Makefile2
-rw-r--r--science/mpqc/Makefile2
-rw-r--r--science/ncs/Makefile2
-rw-r--r--science/netcdf-fortran/Makefile1
-rw-r--r--science/openkim/Makefile2
-rw-r--r--science/paje/Makefile2
-rw-r--r--science/paraview/Makefile2
-rw-r--r--science/pnetcdf/Makefile2
-rw-r--r--science/psychopy/Makefile2
-rw-r--r--science/py-h5py/Makefile1
-rw-r--r--science/py-hcluster/Makefile2
-rw-r--r--science/py-mdp/Makefile1
-rw-r--r--science/py-mlpy/Makefile2
-rw-r--r--science/py-netCDF4/Makefile1
-rw-r--r--science/py-obspy/Makefile2
-rw-r--r--science/py-pupynere/Makefile2
-rw-r--r--science/py-pydap/Makefile2
-rw-r--r--science/py-pysal/Makefile1
-rw-r--r--science/py-scikit-learn/Makefile1
-rw-r--r--science/py-scimath/Makefile2
-rw-r--r--science/py-scipy/Makefile2
-rw-r--r--science/pybrain/Makefile1
-rw-r--r--science/pycdf/Makefile2
-rw-r--r--science/pynn/Makefile2
-rw-r--r--science/pyteomics/Makefile1
-rw-r--r--science/ruby-dcl/Makefile2
-rw-r--r--science/ruby-gphys/Makefile2
-rw-r--r--science/ruby-netcdf/Makefile2
-rw-r--r--science/step/Makefile2
-rw-r--r--science/v_sim/Makefile2
-rw-r--r--science/veusz/Makefile2
-rw-r--r--science/vmd/Makefile2
-rw-r--r--science/xmakemol/Makefile2
76 files changed, 76 insertions, 63 deletions
diff --git a/science/R-cran-AMORE/Makefile b/science/R-cran-AMORE/Makefile
index e2d1931495f6..f188dfae9447 100644
--- a/science/R-cran-AMORE/Makefile
+++ b/science/R-cran-AMORE/Makefile
@@ -3,7 +3,7 @@
PORTNAME= AMORE
PORTVERSION= 0.2.14
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile
index 9642708b81c2..fd7d5d0ae7b3 100644
--- a/science/R-cran-DCluster/Makefile
+++ b/science/R-cran-DCluster/Makefile
@@ -3,7 +3,7 @@
PORTNAME= DCluster
DISTVERSION= 0.2-6
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-Epi/Makefile b/science/R-cran-Epi/Makefile
index f5cc920ae09d..13cdec3375e9 100644
--- a/science/R-cran-Epi/Makefile
+++ b/science/R-cran-Epi/Makefile
@@ -3,7 +3,7 @@
PORTNAME= Epi
PORTVERSION= 1.1.49
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-bayesm/Makefile b/science/R-cran-bayesm/Makefile
index 8564233b837a..29782f3812a3 100644
--- a/science/R-cran-bayesm/Makefile
+++ b/science/R-cran-bayesm/Makefile
@@ -3,7 +3,7 @@
PORTNAME= bayesm
PORTVERSION= 2.2.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
diff --git a/science/R-cran-e1071/Makefile b/science/R-cran-e1071/Makefile
index 54088bc22130..7828e2fd1aac 100644
--- a/science/R-cran-e1071/Makefile
+++ b/science/R-cran-e1071/Makefile
@@ -3,6 +3,7 @@
PORTNAME= e1071
DISTVERSION= 1.6-4
+PORTREVISION= 1
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-eco/Makefile b/science/R-cran-eco/Makefile
index a47154025b33..c13b3f6c1eda 100644
--- a/science/R-cran-eco/Makefile
+++ b/science/R-cran-eco/Makefile
@@ -3,7 +3,7 @@
PORTNAME= eco
PORTVERSION= 3.1.6
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
diff --git a/science/R-cran-epicalc/Makefile b/science/R-cran-epicalc/Makefile
index 7fb456bbc825..d1738af1e4f7 100644
--- a/science/R-cran-epicalc/Makefile
+++ b/science/R-cran-epicalc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= epicalc
PORTVERSION= 2.15.1.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-snow/Makefile b/science/R-cran-snow/Makefile
index 4f213f3c4832..ec408edb834e 100644
--- a/science/R-cran-snow/Makefile
+++ b/science/R-cran-snow/Makefile
@@ -3,7 +3,7 @@
PORTNAME= snow
DISTVERSION= 0.3-13
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-som/Makefile b/science/R-cran-som/Makefile
index 6f76d3f2ee18..16e444b7b54b 100644
--- a/science/R-cran-som/Makefile
+++ b/science/R-cran-som/Makefile
@@ -3,7 +3,7 @@
PORTNAME= som
DISTVERSION= 0.3-5
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/afni/Makefile b/science/afni/Makefile
index 5e256e225ea3..dfcaac8f154f 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -11,7 +11,7 @@
PORTNAME= afni
PORTVERSION= 2012.04.17.2129
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= science biology graphics
MASTER_SITES= http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/
diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile
index 0c6b9f40564d..f929ff96ae49 100644
--- a/science/avogadro/Makefile
+++ b/science/avogadro/Makefile
@@ -3,7 +3,7 @@
PORTNAME= avogadro
PORTVERSION= 1.1.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= SF
diff --git a/science/brian/Makefile b/science/brian/Makefile
index d25c6bb1da9e..6dd6cb88262b 100644
--- a/science/brian/Makefile
+++ b/science/brian/Makefile
@@ -3,7 +3,7 @@
PORTNAME= brian
PORTVERSION= 1.4.1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
diff --git a/science/cdf/Makefile b/science/cdf/Makefile
index 8eecf6f26783..8e41fd0e65f0 100644
--- a/science/cdf/Makefile
+++ b/science/cdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= cdf3
PORTVERSION= 3.3.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= ${MASTER_SITE_LOCAL} \
ftp://cdaweb.gsfc.nasa.gov/pub/cdf/dist/cdf${VER}/unix/
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index f38fb459be54..dc905aac947c 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,7 +3,7 @@
PORTNAME= cgnslib
DISTVERSION= 3.2.1
-PORTREVISION= 1
+PORTREVISION= 2
PORTEPOCH= 1
CATEGORIES= science
MASTER_SITES= SF/cgns/${PORTNAME}_${PORTVERSION:R}/
diff --git a/science/dcl/Makefile b/science/dcl/Makefile
index 7e9f04e360ba..b537331a8b8f 100644
--- a/science/dcl/Makefile
+++ b/science/dcl/Makefile
@@ -3,6 +3,7 @@
PORTNAME= dcl
PORTVERSION= 5.4.8
+PORTREVISION= 1
CATEGORIES= science graphics
MASTER_SITES= http://www.gfd-dennou.org/library/dcl/ \
http://dennou-h.gfd-dennou.org/library/dcl/ \
diff --git a/science/dlpoly-classic/Makefile b/science/dlpoly-classic/Makefile
index b5e83f386bc6..f086e01f30a9 100644
--- a/science/dlpoly-classic/Makefile
+++ b/science/dlpoly-classic/Makefile
@@ -3,7 +3,7 @@
PORTNAME= dlpoly
PORTVERSION= 1.8
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science java
MASTER_SITES= http://ccpforge.cse.rl.ac.uk/gf/download/frsrelease/238/2028/
PKGNAMESUFFIX= classic
diff --git a/science/ecs/Makefile b/science/ecs/Makefile
index 96d56d19f3d7..588ff553f405 100644
--- a/science/ecs/Makefile
+++ b/science/ecs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ecs
PORTVERSION= 2.0.2
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/elmer-eio/Makefile b/science/elmer-eio/Makefile
index e12515b693cd..e6e1b8b7c2ac 100644
--- a/science/elmer-eio/Makefile
+++ b/science/elmer-eio/Makefile
@@ -3,7 +3,7 @@
PORTNAME= eio
PORTVERSION= 5.4.0
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
MASTER_SITES= http://garr.dl.sourceforge.net/sourceforge/elmerfem/
PKGNAMEPREFIX= elmer-
diff --git a/science/elmer-matc/Makefile b/science/elmer-matc/Makefile
index e53508ad945c..3d901654ef92 100644
--- a/science/elmer-matc/Makefile
+++ b/science/elmer-matc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= matc
PORTVERSION= 5.4.0
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
MASTER_SITES= http://garr.dl.sourceforge.net/sourceforge/elmerfem/
PKGNAMEPREFIX= elmer-
diff --git a/science/fvcom-mpi/Makefile b/science/fvcom-mpi/Makefile
index 99edb7428911..0b6710b1fa87 100644
--- a/science/fvcom-mpi/Makefile
+++ b/science/fvcom-mpi/Makefile
@@ -1,7 +1,7 @@
# Created by: Jason Bacon <jwbacon@tds.net>
# $FreeBSD$
-PORTREVISION= 5
+PORTREVISION= 6
PKGNAMESUFFIX= -openmpi
MPIPREFIX= mpi/openmpi/
diff --git a/science/fvcom/Makefile b/science/fvcom/Makefile
index 39745088f27c..68a21f69a8cf 100644
--- a/science/fvcom/Makefile
+++ b/science/fvcom/Makefile
@@ -3,7 +3,7 @@
PORTNAME= fvcom
PORTVERSION= 2.7.1
-PORTREVISION?= 4
+PORTREVISION?= 5
CATEGORIES= science
MASTER_SITES= http://fvcom.smast.umassd.edu/FVCOM/index.html/
DISTNAME= sourcecode1
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index 08a88cabd204..5cbc4b3b4571 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
PORTNAME= fvm
PORTVERSION= 0.15.3
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/gchemutils/Makefile b/science/gchemutils/Makefile
index effaa17223a1..e0ef0c3f33e9 100644
--- a/science/gchemutils/Makefile
+++ b/science/gchemutils/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gchemutils
PORTVERSION= 0.14.7
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= ${MASTER_SITE_SAVANNAH}
MASTER_SITE_SUBDIR= ${PORTNAME}/${PORTVERSION:R}
diff --git a/science/getdp/Makefile b/science/getdp/Makefile
index 11416a447521..475cd6ae212c 100644
--- a/science/getdp/Makefile
+++ b/science/getdp/Makefile
@@ -3,7 +3,7 @@
PORTNAME= getdp
PORTVERSION= 2.2.1
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= http://www.geuz.org/getdp/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source
diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile
index 2daa0e75f0de..05f9bfda7926 100644
--- a/science/ghemical/Makefile
+++ b/science/ghemical/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ghemical
PORTVERSION= 3.0.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index c7205ab6a503..f24ad3e8dded 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gnudatalanguage
DISTVERSION= 0.9.4
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= science lang
MASTER_SITES= SF/${PORTNAME}/gdl/${DISTVERSION}
.if defined(BUILD_PYTHON_MODULE)
diff --git a/science/gramps/Makefile b/science/gramps/Makefile
index 34ac26b312c8..6ad151b0ab99 100644
--- a/science/gramps/Makefile
+++ b/science/gramps/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gramps
PORTVERSION= 3.4.8
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science gnome python
MASTER_SITES= SF/${PORTNAME}/Stable/${PORTVERSION}
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index 40a1ca95fd23..0d8869004c0f 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gromacs
PORTVERSION= 5.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff --git a/science/gtamsanalyzer/Makefile b/science/gtamsanalyzer/Makefile
index bd82e2bf171b..7520a4e449d5 100644
--- a/science/gtamsanalyzer/Makefile
+++ b/science/gtamsanalyzer/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gtamsanalyzer
PORTVERSION= 0.42
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science gnustep
MASTER_SITES= SF/tamsys/gnustep%20tams/GTAMSAnalyzer%2${PORTVERSION}
DISTNAME= GTAMSAnalyzer.src.${PORTVERSION}
diff --git a/science/gwyddion/Makefile b/science/gwyddion/Makefile
index 6dde0d22a862..8fa2418d8704 100644
--- a/science/gwyddion/Makefile
+++ b/science/gwyddion/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gwyddion
PORTVERSION= 2.37
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science graphics
MASTER_SITES= SF
diff --git a/science/harminv/Makefile b/science/harminv/Makefile
index 1ec5e4e6cfb3..e4e8534e8c65 100644
--- a/science/harminv/Makefile
+++ b/science/harminv/Makefile
@@ -3,7 +3,7 @@
PORTNAME= harminv
PORTVERSION= 1.3.1
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/harminv/
diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index c59fca853183..41bd19b4c239 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hdf
DISTVERSION= 4.2.8
-PORTREVISION= 3
+PORTREVISION= 4
PORTEPOCH= 1
CATEGORIES= science archivers graphics
MASTER_SITES= http://www.hdfgroup.org/ftp/HDF/releases/%SUBDIR%/
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile
index 63364b313112..9910dc693d39 100644
--- a/science/hs-bio/Makefile
+++ b/science/hs-bio/Makefile
@@ -3,6 +3,7 @@
PORTNAME= bio
PORTVERSION= 0.5.3
+PORTREVISION= 1
CATEGORIES= science haskell
MAINTAINER= haskell@FreeBSD.org
diff --git a/science/isaac-cfd/Makefile b/science/isaac-cfd/Makefile
index e2112fd09943..749559b22204 100644
--- a/science/isaac-cfd/Makefile
+++ b/science/isaac-cfd/Makefile
@@ -3,7 +3,7 @@
PORTNAME= isaac
PORTVERSION= 4.2
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= science
MASTER_SITES= SF/${PORTNAME}-cfd/${PORTNAME}-cfd/ISAAC%20Version%20${PORTVERSION}
DISTFILES= ${PORTNAME}src.4_2${EXTRACT_SUFX} ${PORTNAME}mk.4_2${EXTRACT_SUFX}
diff --git a/science/kalzium/Makefile b/science/kalzium/Makefile
index 9a579da55c57..6dca8c5334c8 100644
--- a/science/kalzium/Makefile
+++ b/science/kalzium/Makefile
@@ -2,7 +2,7 @@
PORTNAME= kalzium
PORTVERSION= ${KDE4_VERSION}
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science kde
MASTER_SITES= KDE/${KDE4_BRANCH}/${PORTVERSION}/src
DIST_SUBDIR= KDE/${PORTVERSION}
diff --git a/science/kst2/Makefile b/science/kst2/Makefile
index bf3dd49b2e49..ad06f237d17a 100644
--- a/science/kst2/Makefile
+++ b/science/kst2/Makefile
@@ -3,7 +3,7 @@
PORTNAME= kst
DISTVERSION= 2.0.6
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science kde
MASTER_SITES= SF/${PORTNAME}/Kst%20${DISTVERSION:C/-r.*//}/
diff --git a/science/lamprop/Makefile b/science/lamprop/Makefile
index c6368c09bf02..a4acaa21c02c 100644
--- a/science/lamprop/Makefile
+++ b/science/lamprop/Makefile
@@ -3,6 +3,7 @@
PORTNAME= lamprop
PORTVERSION= 1.5.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://rsmith.home.xs4all.nl/files/
diff --git a/science/libctl/Makefile b/science/libctl/Makefile
index 4253a3f68620..8265aa5c07d8 100644
--- a/science/libctl/Makefile
+++ b/science/libctl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= libctl
PORTVERSION= 3.2.1
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science math
MASTER_SITES= http://ab-initio.mit.edu/libctl/
diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile
index 8758d43a390c..3a3db1704734 100644
--- a/science/libghemical/Makefile
+++ b/science/libghemical/Makefile
@@ -3,7 +3,7 @@
PORTNAME= libghemical
PORTVERSION= 3.0.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current
diff --git a/science/liboglappth/Makefile b/science/liboglappth/Makefile
index f8222296e980..b9ae2c2da287 100644
--- a/science/liboglappth/Makefile
+++ b/science/liboglappth/Makefile
@@ -3,7 +3,7 @@
PORTNAME= liboglappth
PORTVERSION= 1.0.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current
diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile
index 8f081ec10d3d..98eb84f8f3fe 100644
--- a/science/mbdyn/Makefile
+++ b/science/mbdyn/Makefile
@@ -3,6 +3,7 @@
PORTNAME= mbdyn
PORTVERSION= 1.4.3
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://www.aero.polimi.it/~masarati/Download/mbdyn/
diff --git a/science/medit/Makefile b/science/medit/Makefile
index ae52ac54adaa..de007b258782 100644
--- a/science/medit/Makefile
+++ b/science/medit/Makefile
@@ -3,7 +3,7 @@
PORTNAME= medit
PORTVERSION= 2012.02.05
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science graphics
MASTER_SITES= http://www.ann.jussieu.fr/~frey/ftp/archives/
DISTFILES= ${SOURCETARB} ${LIBTARBALL}
diff --git a/science/meep/Makefile b/science/meep/Makefile
index 8c6599bed5a3..ca56388ffc60 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -3,7 +3,7 @@
PORTNAME= meep
PORTVERSION= 1.2
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/meep/
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index 3bdbc68dcf21..d863b53be498 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mpb
PORTVERSION= 1.4.2
-PORTREVISION= 16
+PORTREVISION= 17
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/mpb/
diff --git a/science/mpqc/Makefile b/science/mpqc/Makefile
index 304c9b4f4fce..6929448be3e7 100644
--- a/science/mpqc/Makefile
+++ b/science/mpqc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mpqc
PORTVERSION= 2.3.1
-PORTREVISION= 22
+PORTREVISION= 23
CATEGORIES= science parallel
MASTER_SITES= SF
diff --git a/science/ncs/Makefile b/science/ncs/Makefile
index ac654a397567..07ced4d809d7 100644
--- a/science/ncs/Makefile
+++ b/science/ncs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ncs
PORTVERSION= 2.0.4
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/netcdf-fortran/Makefile b/science/netcdf-fortran/Makefile
index 361ec74f462b..e6b48f77231f 100644
--- a/science/netcdf-fortran/Makefile
+++ b/science/netcdf-fortran/Makefile
@@ -3,6 +3,7 @@
PORTNAME= netcdf-fortran
PORTVERSION= 4.4.0
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= sunpoet@FreeBSD.org
diff --git a/science/openkim/Makefile b/science/openkim/Makefile
index 2f07136b58c2..7a2c00add2df 100644
--- a/science/openkim/Makefile
+++ b/science/openkim/Makefile
@@ -3,7 +3,7 @@
PORTNAME= openkim
PORTVERSION= 1.1.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://s3.openkim.org/openkim-api/
DISTNAME= ${PORTNAME}-api-v${PORTVERSION}
diff --git a/science/paje/Makefile b/science/paje/Makefile
index dd28bda0c260..07bb0fccf29c 100644
--- a/science/paje/Makefile
+++ b/science/paje/Makefile
@@ -3,7 +3,7 @@
PORTNAME= paje
PORTVERSION= 1.97
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science gnustep
MASTER_SITES= SF/${PORTNAME}/Releases
DISTNAME= Paje_${PORTVERSION}
diff --git a/science/paraview/Makefile b/science/paraview/Makefile
index ef1c1511a6d6..75a9b6430456 100644
--- a/science/paraview/Makefile
+++ b/science/paraview/Makefile
@@ -3,7 +3,7 @@
PORTNAME= paraview
PORTVERSION= 4.1.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science graphics
MASTER_SITES= http://www.paraview.org/files/v${VERMAJORMINOR}/
DISTNAME= ParaView-v${PORTVERSION}-source
diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index e45c7ce137f6..bce9d5743f7f 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pnetcdf
PORTVERSION= 1.5.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science parallel
MASTER_SITES= http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \
LOCAL/sunpoet
diff --git a/science/psychopy/Makefile b/science/psychopy/Makefile
index 25ea52f606ac..465a00205b16 100644
--- a/science/psychopy/Makefile
+++ b/science/psychopy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psychopy
PORTVERSION= 1.77.00
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_GOOGLE_CODE}
DISTNAME= PsychoPy-${PORTVERSION}
diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile
index 5faecd9012ce..57db7afb3138 100644
--- a/science/py-h5py/Makefile
+++ b/science/py-h5py/Makefile
@@ -3,6 +3,7 @@
PORTNAME= h5py
PORTVERSION= 2.3.0
+PORTREVISION= 1
CATEGORIES= science python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-hcluster/Makefile b/science/py-hcluster/Makefile
index 657373cfd00b..de3923e7fab8 100644
--- a/science/py-hcluster/Makefile
+++ b/science/py-hcluster/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hcluster
PORTVERSION= 0.2.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-mdp/Makefile b/science/py-mdp/Makefile
index 769ebe6004ef..3add2fd279ea 100644
--- a/science/py-mdp/Makefile
+++ b/science/py-mdp/Makefile
@@ -3,6 +3,7 @@
PORTNAME= mdp
PORTVERSION= 3.3
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= SF/${PORTNAME}-toolkit/${PORTNAME}-toolkit/${PORTVERSION}
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-mlpy/Makefile b/science/py-mlpy/Makefile
index 8990219b0c3b..13b3ba3920a6 100644
--- a/science/py-mlpy/Makefile
+++ b/science/py-mlpy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mlpy
PORTVERSION= 3.5.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}%20${PORTVERSION}
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index 2b4a9c570113..b56afb786914 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -3,6 +3,7 @@
PORTNAME= netCDF4
PORTVERSION= 1.0.8
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= GH
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile
index 678e012d94b0..a7ef4e1ad817 100644
--- a/science/py-obspy/Makefile
+++ b/science/py-obspy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= obspy
PORTVERSION= 0.9.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-pupynere/Makefile b/science/py-pupynere/Makefile
index 9ec6b1eea93d..cb056599c9f9 100644
--- a/science/py-pupynere/Makefile
+++ b/science/py-pupynere/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pupynere
PORTVERSION= 1.0.15
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-pydap/Makefile b/science/py-pydap/Makefile
index c251c383d967..b934c327f3a2 100644
--- a/science/py-pydap/Makefile
+++ b/science/py-pydap/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pydap
PORTVERSION= 3.1.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-pysal/Makefile b/science/py-pysal/Makefile
index f2bf6f3d1c82..3ae1d6a17e56 100644
--- a/science/py-pysal/Makefile
+++ b/science/py-pysal/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pysal
PORTVERSION= 1.8.0
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scikit-learn/Makefile b/science/py-scikit-learn/Makefile
index 03c4b9ea268d..2079784b9655 100644
--- a/science/py-scikit-learn/Makefile
+++ b/science/py-scikit-learn/Makefile
@@ -3,6 +3,7 @@
PORTNAME= scikit-learn
PORTVERSION= 0.15.0
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_CHEESESHOP}
MASTER_SITE_SUBDIR=source/s/scikit-learn
diff --git a/science/py-scimath/Makefile b/science/py-scimath/Makefile
index ecf9f9357b78..9d5742e0e7f3 100644
--- a/science/py-scimath/Makefile
+++ b/science/py-scimath/Makefile
@@ -3,7 +3,7 @@
PORTNAME= scimath
PORTVERSION= 4.1.2
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science math python
MASTER_SITES= http://www.enthought.com/repo/ets/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile
index ecd0822aa4f0..fe7ba150e3ea 100644
--- a/science/py-scipy/Makefile
+++ b/science/py-scipy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= scipy
PORTVERSION= 0.14.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science python
MASTER_SITES= http://docs.scipy.org/doc/${DISTNAME}/:doc \
SF:source
diff --git a/science/pybrain/Makefile b/science/pybrain/Makefile
index 5612cb7f025e..bc114f93d305 100644
--- a/science/pybrain/Makefile
+++ b/science/pybrain/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pybrain
PORTVERSION= 0.3.2
+PORTREVISION= 1
CATEGORIES= science python
DISTNAME= PyBrain-${PORTVERSION}
diff --git a/science/pycdf/Makefile b/science/pycdf/Makefile
index 6193a9323697..368756886216 100644
--- a/science/pycdf/Makefile
+++ b/science/pycdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pycdf
PORTVERSION= 0.6.3
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science python
MASTER_SITES= SF/pysclint/${PORTNAME}/${PORTNAME}-${PORTVERSION}b
DISTNAME= ${PORTNAME}-0.6-3b
diff --git a/science/pynn/Makefile b/science/pynn/Makefile
index b50e0dec2ca4..25d51b541c48 100644
--- a/science/pynn/Makefile
+++ b/science/pynn/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pynn
PORTVERSION= 0.7.5
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/pyteomics/Makefile b/science/pyteomics/Makefile
index 23ee38c5c6bf..7573c9177836 100644
--- a/science/pyteomics/Makefile
+++ b/science/pyteomics/Makefile
@@ -2,6 +2,7 @@
PORTNAME= pyteomics
PORTVERSION= 2.4.0
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/ruby-dcl/Makefile b/science/ruby-dcl/Makefile
index 6621afb51018..581b191fcc1f 100644
--- a/science/ruby-dcl/Makefile
+++ b/science/ruby-dcl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= dcl
PORTVERSION= 1.7.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science graphics ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-dcl/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-dcl/release/ \
diff --git a/science/ruby-gphys/Makefile b/science/ruby-gphys/Makefile
index 60916aa0d926..8124209c14a1 100644
--- a/science/ruby-gphys/Makefile
+++ b/science/ruby-gphys/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gphys
PORTVERSION= 1.2.2
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/gphys/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/gphys/release/ \
diff --git a/science/ruby-netcdf/Makefile b/science/ruby-netcdf/Makefile
index a903058bd0af..cde4854b4f59 100644
--- a/science/ruby-netcdf/Makefile
+++ b/science/ruby-netcdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= netcdf
PORTVERSION= 0.6.6
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-netcdf/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-netcdf/release/ \
diff --git a/science/step/Makefile b/science/step/Makefile
index e4d332c657af..7ba2291a5608 100644
--- a/science/step/Makefile
+++ b/science/step/Makefile
@@ -2,7 +2,7 @@
PORTNAME= step
PORTVERSION= ${KDE4_VERSION}
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science kde
MASTER_SITES= KDE/${KDE4_BRANCH}/${PORTVERSION}/src
DIST_SUBDIR= KDE/${PORTVERSION}
diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile
index 5da220ab2f26..c4deef087e05 100644
--- a/science/v_sim/Makefile
+++ b/science/v_sim/Makefile
@@ -3,7 +3,7 @@
PORTNAME= v_sim
PORTVERSION= 3.7.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/
diff --git a/science/veusz/Makefile b/science/veusz/Makefile
index 10167207a967..ec35e3668470 100644
--- a/science/veusz/Makefile
+++ b/science/veusz/Makefile
@@ -3,7 +3,7 @@
PORTNAME= veusz
PORTVERSION= 1.19.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science kde
MASTER_SITES= http://download.gna.org/veusz/
diff --git a/science/vmd/Makefile b/science/vmd/Makefile
index f3cc7016956d..0f68b379f073 100644
--- a/science/vmd/Makefile
+++ b/science/vmd/Makefile
@@ -3,7 +3,7 @@
PORTNAME= vmd
DISTVERSION= 1.9.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science graphics python tcl tk
MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b2/:tachyon \
http://www.photonlimited.com/~johns/tachyon/files/0.99b2/:tachyon \
diff --git a/science/xmakemol/Makefile b/science/xmakemol/Makefile
index 8aff95686143..fff455a24993 100644
--- a/science/xmakemol/Makefile
+++ b/science/xmakemol/Makefile
@@ -3,7 +3,7 @@
PORTNAME= xmakemol
PORTVERSION= 5.16
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= SAVANNAH