Upgrade to 5.3.2.

Release notes at
https://github.com/code-saturne/code_saturne/blob/v5.3/NEWS.md#release-532---january-29-2019

3 files changed, 42 insertions, 38 deletions

diff --git a/science/code_saturne/Makefile b/science/code_saturne/Makefile
index bbaffb1651f7..e81575c82f25 100644
--- a/science/code_saturne/Makefile
+++ b/science/code_saturne/Makefile
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	code_saturne
-PORTVERSION=	5.3.1
-PORTREVISION=	3
+PORTVERSION=	5.3.2
 DISTVERSIONPREFIX=	v
 CATEGORIES=	science parallel
 
@@ -26,8 +25,10 @@ GH_ACCOUNT=	code-saturne
 
 USES=		autoreconf bison fortran gettext gnome gmake iconv libtool	\
 		pyqt:5 python:2.7 shebangfix
+
 USE_GNOME=	libxml2
 USE_PYQT=	core gui sip widgets xml_build
+SHEBANG_FILES=	install_saturne.py tests/unittests.py bin/*.py build-aux/*.py
 CPPFLAGS+=	-I${LOCALBASE}/include -I${LOCALBASE}/include/libxml2
 GNU_CONFIGURE=	yes
 USE_LDCONFIG=	yes
@@ -86,6 +87,8 @@ pre-configure:
 	${FLEX} -o ${WRKSRC}/src/mei/mei_scanner.c ${WRKSRC}/src/mei/mei_scanner.l
 	${LOCALBASE}/bin/bison --defines=${WRKSRC}/src/mei/mei_parser.h	\
 		-o ${WRKSRC}/src/mei/mei_parser.c ${WRKSRC}/src/mei/mei_parser.y
+	${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|'	\
+		${WRKSRC}/Makefile.am
 
 post-install:
 .if ${PORT_OPTIONS:MDOCS}
diff --git a/science/code_saturne/distinfo b/science/code_saturne/distinfo
index 2e25aaafab7a..49e3e7cb7365 100644
--- a/science/code_saturne/distinfo
+++ b/science/code_saturne/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1543066971
-SHA256 (code-saturne-code_saturne-v5.3.1_GH0.tar.gz) = 2a46e51103e220aa221fdb2b0b0b554103258da5d2f4f0ac8faa6c76c2181da6
-SIZE (code-saturne-code_saturne-v5.3.1_GH0.tar.gz) = 18872146
+TIMESTAMP = 1551540679
+SHA256 (code-saturne-code_saturne-v5.3.2_GH0.tar.gz) = 67b1fb37a01cf3648b980975337bd91ebc8058455df8a8b0f2215f0e698cea4f
+SIZE (code-saturne-code_saturne-v5.3.2_GH0.tar.gz) = 18875472
diff --git a/science/code_saturne/pkg-plist b/science/code_saturne/pkg-plist
index 3fae8a6481b2..d9b76d50bbf4 100644
--- a/science/code_saturne/pkg-plist
+++ b/science/code_saturne/pkg-plist
@@ -11,16 +11,17 @@ include/code_saturne/atincl.mod
 include/code_saturne/atsoil.mod
 include/code_saturne/bft_backtrace.h
 include/code_saturne/bft_error.h
-include/code_saturne/bft_mem.h
 include/code_saturne/bft_mem_usage.h
+include/code_saturne/bft_mem.h
 include/code_saturne/bft_printf.h
 include/code_saturne/cavitation.mod
+include/code_saturne/cdomod.mod
 include/code_saturne/cfpoin.mod
 include/code_saturne/coincl.mod
 include/code_saturne/cpincl.mod
 include/code_saturne/cplsat.mod
-include/code_saturne/cs_1d_wall_thermal.h
 include/code_saturne/cs_1d_wall_thermal_check.h
+include/code_saturne/cs_1d_wall_thermal.h
 include/code_saturne/cs_advection_field.h
 include/code_saturne/cs_ale.h
 include/code_saturne/cs_all_to_all.h
@@ -31,10 +32,10 @@ include/code_saturne/cs_at_data_assim.h
 include/code_saturne/cs_at_opt_interp.h
 include/code_saturne/cs_at_plugin.h
 include/code_saturne/cs_bad_cells_regularisation.h
-include/code_saturne/cs_balance.h
 include/code_saturne/cs_balance_by_zone.h
-include/code_saturne/cs_base.h
+include/code_saturne/cs_balance.h
 include/code_saturne/cs_base_fortran.h
+include/code_saturne/cs_base.h
 include/code_saturne/cs_basis_func.h
 include/code_saturne/cs_benchmark.h
 include/code_saturne/cs_blas.h
@@ -71,42 +72,41 @@ include/code_saturne/cs_control.h
 include/code_saturne/cs_convection_diffusion.h
 include/code_saturne/cs_coupling.h
 include/code_saturne/cs_crystal_router.h
-include/code_saturne/cs_ctwr.h
 include/code_saturne/cs_ctwr_air_props.h
+include/code_saturne/cs_ctwr.h
 include/code_saturne/cs_dbg.h
 include/code_saturne/cs_defs.h
 include/code_saturne/cs_divergence.h
-include/code_saturne/cs_domain.h
 include/code_saturne/cs_domain_boundary.h
 include/code_saturne/cs_domain_op.h
 include/code_saturne/cs_domain_setup.h
+include/code_saturne/cs_domain.h
 include/code_saturne/cs_elec_model.h
-include/code_saturne/cs_equation.h
 include/code_saturne/cs_equation_bc.h
 include/code_saturne/cs_equation_common.h
 include/code_saturne/cs_equation_iterative_solve.h
 include/code_saturne/cs_equation_param.h
 include/code_saturne/cs_equation_priv.h
+include/code_saturne/cs_equation.h
 include/code_saturne/cs_evaluate.h
 include/code_saturne/cs_ext_neighborhood.h
 include/code_saturne/cs_f_interfaces.mod
 include/code_saturne/cs_face_viscosity.h
 include/code_saturne/cs_fan.h
-include/code_saturne/cs_field.h
 include/code_saturne/cs_field_default.h
 include/code_saturne/cs_field_operator.h
 include/code_saturne/cs_field_pointer.h
+include/code_saturne/cs_field.h
 include/code_saturne/cs_file.h
-include/code_saturne/cs_flag.h
 include/code_saturne/cs_flag_check.h
+include/code_saturne/cs_flag.h
 include/code_saturne/cs_fp_exception.h
 include/code_saturne/cs_fuel_incl.mod
 include/code_saturne/cs_gas_mix.h
 include/code_saturne/cs_geom.h
-include/code_saturne/cs_gradient.h
 include/code_saturne/cs_gradient_perio.h
+include/code_saturne/cs_gradient.h
 include/code_saturne/cs_grid.h
-include/code_saturne/cs_gui.h
 include/code_saturne/cs_gui_boundary_conditions.h
 include/code_saturne/cs_gui_conjugate_heat_transfer.h
 include/code_saturne/cs_gui_mesh.h
@@ -117,13 +117,14 @@ include/code_saturne/cs_gui_radiative_transfer.h
 include/code_saturne/cs_gui_specific_physics.h
 include/code_saturne/cs_gui_util.h
 include/code_saturne/cs_gui_variables.h
-include/code_saturne/cs_gwf.h
+include/code_saturne/cs_gui.h
 include/code_saturne/cs_gwf_parameters.h
 include/code_saturne/cs_gwf_physical_properties.h
 include/code_saturne/cs_gwf_soil.h
 include/code_saturne/cs_gwf_tracer.h
-include/code_saturne/cs_halo.h
+include/code_saturne/cs_gwf.h
 include/code_saturne/cs_halo_perio.h
+include/code_saturne/cs_halo.h
 include/code_saturne/cs_head_losses.h
 include/code_saturne/cs_hho_builder.h
 include/code_saturne/cs_hho_scaleq.h
@@ -134,7 +135,6 @@ include/code_saturne/cs_interface.h
 include/code_saturne/cs_internal_coupling.h
 include/code_saturne/cs_interpolate.h
 include/code_saturne/cs_io.h
-include/code_saturne/cs_join.h
 include/code_saturne/cs_join_intersect.h
 include/code_saturne/cs_join_merge.h
 include/code_saturne/cs_join_mesh.h
@@ -144,7 +144,7 @@ include/code_saturne/cs_join_set.h
 include/code_saturne/cs_join_split.h
 include/code_saturne/cs_join_update.h
 include/code_saturne/cs_join_util.h
-include/code_saturne/cs_lagr.h
+include/code_saturne/cs_join.h
 include/code_saturne/cs_lagr_adh.h
 include/code_saturne/cs_lagr_car.h
 include/code_saturne/cs_lagr_clogging.h
@@ -170,30 +170,30 @@ include/code_saturne/cs_lagr_query.h
 include/code_saturne/cs_lagr_restart.h
 include/code_saturne/cs_lagr_resuspension.h
 include/code_saturne/cs_lagr_roughness.h
-include/code_saturne/cs_lagr_sde.h
 include/code_saturne/cs_lagr_sde_model.h
+include/code_saturne/cs_lagr_sde.h
 include/code_saturne/cs_lagr_stat.h
 include/code_saturne/cs_lagr_tracking.h
+include/code_saturne/cs_lagr.h
 include/code_saturne/cs_les_filter.h
 include/code_saturne/cs_les_inflow.h
-include/code_saturne/cs_log.h
 include/code_saturne/cs_log_iteration.h
 include/code_saturne/cs_log_setup.h
+include/code_saturne/cs_log.h
 include/code_saturne/cs_map.h
 include/code_saturne/cs_math.h
-include/code_saturne/cs_matrix.h
 include/code_saturne/cs_matrix_assembler.h
 include/code_saturne/cs_matrix_building.h
 include/code_saturne/cs_matrix_default.h
 include/code_saturne/cs_matrix_priv.h
 include/code_saturne/cs_matrix_tuning.h
 include/code_saturne/cs_matrix_util.h
+include/code_saturne/cs_matrix.h
 include/code_saturne/cs_measures_util.h
-include/code_saturne/cs_mesh.h
 include/code_saturne/cs_mesh_adjacencies.h
 include/code_saturne/cs_mesh_bad_cells.h
-include/code_saturne/cs_mesh_boundary.h
 include/code_saturne/cs_mesh_boundary_layer.h
+include/code_saturne/cs_mesh_boundary.h
 include/code_saturne/cs_mesh_builder.h
 include/code_saturne/cs_mesh_coherency.h
 include/code_saturne/cs_mesh_connect.h
@@ -211,6 +211,7 @@ include/code_saturne/cs_mesh_smoother.h
 include/code_saturne/cs_mesh_thinwall.h
 include/code_saturne/cs_mesh_to_builder.h
 include/code_saturne/cs_mesh_warping.h
+include/code_saturne/cs_mesh.h
 include/code_saturne/cs_multigrid.h
 include/code_saturne/cs_navsto_coupling.h
 include/code_saturne/cs_navsto_param.h
@@ -221,25 +222,24 @@ include/code_saturne/cs_nz_tagmr.mod
 include/code_saturne/cs_opts.h
 include/code_saturne/cs_order.h
 include/code_saturne/cs_parall.h
-include/code_saturne/cs_param.h
 include/code_saturne/cs_param_cdo.h
-include/code_saturne/cs_parameters.h
+include/code_saturne/cs_param.h
 include/code_saturne/cs_parameters_check.h
+include/code_saturne/cs_parameters.h
 include/code_saturne/cs_part_to_block.h
 include/code_saturne/cs_partition.h
 include/code_saturne/cs_physical_constants.h
 include/code_saturne/cs_physical_model.h
 include/code_saturne/cs_physical_properties.h
-include/code_saturne/cs_post.h
 include/code_saturne/cs_post_default.h
 include/code_saturne/cs_post_util.h
+include/code_saturne/cs_post.h
 include/code_saturne/cs_preprocess.h
 include/code_saturne/cs_preprocessor_data.h
 include/code_saturne/cs_probe.h
 include/code_saturne/cs_property.h
 include/code_saturne/cs_prototypes.h
 include/code_saturne/cs_quadrature.h
-include/code_saturne/cs_rad_transfer.h
 include/code_saturne/cs_rad_transfer_absorption.h
 include/code_saturne/cs_rad_transfer_adf_models.h
 include/code_saturne/cs_rad_transfer_bcs.h
@@ -253,14 +253,15 @@ include/code_saturne/cs_rad_transfer_restart.h
 include/code_saturne/cs_rad_transfer_solve.h
 include/code_saturne/cs_rad_transfer_source_terms.h
 include/code_saturne/cs_rad_transfer_wall_flux.h
+include/code_saturne/cs_rad_transfer.h
 include/code_saturne/cs_random.h
 include/code_saturne/cs_range_set.h
 include/code_saturne/cs_rank_neighbors.h
 include/code_saturne/cs_reco.h
 include/code_saturne/cs_renumber.h
 include/code_saturne/cs_resource.h
-include/code_saturne/cs_restart.h
 include/code_saturne/cs_restart_default.h
+include/code_saturne/cs_restart.h
 include/code_saturne/cs_rotation.h
 include/code_saturne/cs_sat_coupling.h
 include/code_saturne/cs_scheme_geometry.h
@@ -268,17 +269,17 @@ include/code_saturne/cs_sdm.h
 include/code_saturne/cs_search.h
 include/code_saturne/cs_selector.h
 include/code_saturne/cs_sla.h
-include/code_saturne/cs_sles.h
 include/code_saturne/cs_sles_default.h
 include/code_saturne/cs_sles_it.h
 include/code_saturne/cs_sles_pc.h
-include/code_saturne/cs_sort.h
+include/code_saturne/cs_sles.h
 include/code_saturne/cs_sort_partition.h
+include/code_saturne/cs_sort.h
 include/code_saturne/cs_source_term.h
 include/code_saturne/cs_static_condensation.h
 include/code_saturne/cs_stokes_model.h
-include/code_saturne/cs_syr4_coupling.h
 include/code_saturne/cs_syr_coupling.h
+include/code_saturne/cs_syr4_coupling.h
 include/code_saturne/cs_system_info.h
 include/code_saturne/cs_tagmr.mod
 include/code_saturne/cs_tagms.mod
@@ -286,19 +287,19 @@ include/code_saturne/cs_thermal_model.h
 include/code_saturne/cs_time_moment.h
 include/code_saturne/cs_time_plot.h
 include/code_saturne/cs_time_step.h
-include/code_saturne/cs_timer.h
 include/code_saturne/cs_timer_stats.h
-include/code_saturne/cs_tree.h
+include/code_saturne/cs_timer.h
 include/code_saturne/cs_tree_xml.h
+include/code_saturne/cs_tree.h
 include/code_saturne/cs_turbomachinery.h
 include/code_saturne/cs_turbulence_bc.h
 include/code_saturne/cs_turbulence_model.h
 include/code_saturne/cs_volume_zone.h
 include/code_saturne/cs_wall_functions.h
 include/code_saturne/cs_walldistance.h
-include/code_saturne/cs_xdef.h
 include/code_saturne/cs_xdef_cw_eval.h
 include/code_saturne/cs_xdef_eval.h
+include/code_saturne/cs_xdef.h
 include/code_saturne/cs_zone.h
 include/code_saturne/cstnum.mod
 include/code_saturne/cstphy.mod
@@ -306,13 +307,12 @@ include/code_saturne/ctincl.mod
 include/code_saturne/darcy_module.mod
 include/code_saturne/dimens.mod
 include/code_saturne/entsor.mod
-include/code_saturne/field.mod
 include/code_saturne/field_operator.mod
+include/code_saturne/field.mod
 include/code_saturne/fvm_defs.h
 include/code_saturne/fvm_group.h
 include/code_saturne/fvm_io_num.h
 include/code_saturne/fvm_neighborhood.h
-include/code_saturne/fvm_nodal.h
 include/code_saturne/fvm_nodal_append.h
 include/code_saturne/fvm_nodal_extract.h
 include/code_saturne/fvm_nodal_extrude.h
@@ -320,6 +320,7 @@ include/code_saturne/fvm_nodal_from_desc.h
 include/code_saturne/fvm_nodal_order.h
 include/code_saturne/fvm_nodal_project.h
 include/code_saturne/fvm_nodal_triangulate.h
+include/code_saturne/fvm_nodal.h
 include/code_saturne/fvm_periodicity.h
 include/code_saturne/fvm_point_location.h
 include/code_saturne/fvm_selector.h