New port: science/mmtf: C++ implementation of the MMTF API, decoder and encoder

5 files changed, 72 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index 2f713e25883b..136989c60bfb 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -142,6 +142,7 @@
     SUBDIR += metaphysicl
     SUBDIR += minc2
     SUBDIR += mmdb2
+    SUBDIR += mmtf
     SUBDIR += mol2ps
     SUBDIR += molgif
     SUBDIR += mpb
diff --git a/science/mmtf/Makefile b/science/mmtf/Makefile
new file mode 100644
index 000000000000..6cbff1437f54
--- /dev/null
+++ b/science/mmtf/Makefile
@@ -0,0 +1,49 @@
+# $FreeBSD$
+
+PORTNAME=	mmtf
+DISTVERSION=	g20180730
+CATEGORIES=	science biology
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	C++ implementation of the MMTF API, decoder and encoder
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+RUN_DEPENDS=	${LOCALBASE}/include/msgpack.hpp:devel/msgpack
+
+USES=		cmake:outsource compiler:c++11-lang localbase:ldflags
+USE_GITHUB=	yes
+GH_ACCOUNT=	rcsb
+GH_PROJECT=	mmtf-cpp
+GH_TAGNAME=	63e58a9
+GH_TUPLE=	rcsb:mmtf:8c88834:x/mmtf_spec
+
+NO_BUILD=	yes
+NO_ARCH=	yes
+
+PLIST_FILES=	include/mmtf.hpp \
+		include/mmtf/binary_decoder.hpp \
+		include/mmtf/binary_encoder.hpp \
+		include/mmtf/decoder.hpp \
+		include/mmtf/encoder.hpp \
+		include/mmtf/errors.hpp \
+		include/mmtf/export_helpers.hpp \
+		include/mmtf/map_decoder.hpp \
+		include/mmtf/msgpack_decoder.hpp \
+		include/mmtf/object_encoders.hpp \
+		include/mmtf/structure_data.hpp
+
+post-patch:
+	@cd ${WRKDIR} && ${LN} -s ${WRKSRC}/mmtf_spec # needed for testing
+
+do-install:
+	cd ${WRKSRC} && ${COPYTREE_SHARE} include ${STAGEDIR}${PREFIX}
+
+do-test:
+	@cd ${BUILD_WRKSRC} && \
+		${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -Dmmtf_build_local=ON -DBUILD_TESTS=ON ${CMAKE_SOURCE_PATH} && \
+		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
+		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test
+
+.include <bsd.port.mk>
diff --git a/science/mmtf/distinfo b/science/mmtf/distinfo
new file mode 100644
index 000000000000..c10212e02821
--- /dev/null
+++ b/science/mmtf/distinfo
@@ -0,0 +1,5 @@
+TIMESTAMP = 1539895815
+SHA256 (rcsb-mmtf-cpp-g20180730-63e58a9_GH0.tar.gz) = 4570596c98ab520514b31f88c66478170123e4aa8f724c96e69d4973be6a527e
+SIZE (rcsb-mmtf-cpp-g20180730-63e58a9_GH0.tar.gz) = 58757
+SHA256 (rcsb-mmtf-8c88834_GH0.tar.gz) = 7c29eb9064e53ea447701b79764732a72ff53aa5adff25759e0e2b549c212cca
+SIZE (rcsb-mmtf-8c88834_GH0.tar.gz) = 34499239
diff --git a/science/mmtf/files/patch-tests_mmtf__tests.cpp b/science/mmtf/files/patch-tests_mmtf__tests.cpp
new file mode 100644
index 000000000000..e7e1d81127cc
--- /dev/null
+++ b/science/mmtf/files/patch-tests_mmtf__tests.cpp
@@ -0,0 +1,11 @@
+--- tests/mmtf_tests.cpp.orig	2018-10-18 20:26:48 UTC
++++ tests/mmtf_tests.cpp
+@@ -5,7 +5,7 @@
+ #define CATCH_CONFIG_MAIN
+ #endif
+ 
+-#include "catch.hpp"
++#include <catch2/catch.hpp>
+ 
+ #include <mmtf.hpp>
+ #include <mmtf/export_helpers.hpp>
diff --git a/science/mmtf/pkg-descr b/science/mmtf/pkg-descr
new file mode 100644
index 000000000000..d0b23bdfdd42
--- /dev/null
+++ b/science/mmtf/pkg-descr
@@ -0,0 +1,6 @@
+mmtf is a C++ headers-only decoder/encoder library for the MMTF format.
+
+The macromolecular transmission format (MMTF) is a binary encoding of chemical
+and biological structures.
+
+WWW: https://mmtf.rcsb.org/