diff options
| -rw-r--r-- | biology/phylip/Makefile | 25 | ||||
| -rw-r--r-- | biology/phylip/distinfo | 4 | ||||
| -rw-r--r-- | biology/phylip/pkg-descr | 19 |
3 files changed, 18 insertions, 30 deletions
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile index d3e5590022cf..a6be9674961b 100644 --- a/biology/phylip/Makefile +++ b/biology/phylip/Makefile @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= phylip -PORTVERSION= 3.695 -PORTREVISION= 3 +PORTVERSION= 3.696 PORTEPOCH= 1 CATEGORIES= biology MASTER_SITES= http://evolution.gs.washington.edu/phylip/download/ @@ -11,13 +10,16 @@ MASTER_SITES= http://evolution.gs.washington.edu/phylip/download/ MAINTAINER= ports@FreeBSD.org COMMENT= Phylogeny Inference Package +LICENSE= BSD2CLAUSE +LICENSE_FILES= ${WRKSRC}/COPYRIGHT + BUILD_DEPENDS= bash:${PORTSDIR}/shells/bash BUILD_WRKSRC= ${WRKSRC}/src INSTALL_WRKSRC= ${WRKSRC}/src -USE_XORG= x11 xaw xt USES= gmake +USE_XORG= x11 xaw xt MAKEFILE= Makefile.unx MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \ DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \ @@ -25,28 +27,23 @@ MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \ USE_LDCONFIG= yes PORTDOCS= * -PORTEXAMPLES= * - -OPTIONS_DEFINE= DOCS EXAMPLES -pre-install: - @(cd ${WRKSRC}/src && ${STRIP_CMD} libdrawtree.so libdrawgram.so) +OPTIONS_DEFINE= DOCS post-install: @cd ${WRKSRC}/exe && \ ${FIND} . -maxdepth 1 -not -type d -not -name '*.jar' \ -not -name '*.unx' -not -name 'font*' -not -name '*.so' \ - -exec ${INSTALL_PROGRAM} "{}" "${STAGEDIR}${PREFIX}/bin/{}" \; + | ${XARGS} -J % ${INSTALL_PROGRAM} % ${STAGEDIR}${PREFIX}/bin @cd ${WRKSRC}/exe && \ ${FIND} . -maxdepth 1 -not -type d -name "*.so" \ - -exec ${INSTALL_DATA} "{}" "${STAGEDIR}${PREFIX}/lib/{}" \; + | ${XARGS} -J % ${INSTALL_LIB} % ${STAGEDIR}${PREFIX}/lib @${MKDIR} ${STAGEDIR}${DATADIR} @cd ${WRKSRC}/exe && \ ${FIND} . -maxdepth 1 -not -type d -name 'font*' \ - -exec ${INSTALL_DATA} "{}" "${STAGEDIR}${DATADIR}/{}" \; + | ${XARGS} -J % ${INSTALL_DATA} % ${STAGEDIR}${DATADIR} @${MKDIR} ${STAGEDIR}${DOCSDIR} - @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) - @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} - @(cd ${WRKSRC}/exe && ${COPYTREE_SHARE} testdata ${STAGEDIR}${EXAMPLESDIR}) + @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . \ + ${STAGEDIR}${DOCSDIR}) .include <bsd.port.mk> diff --git a/biology/phylip/distinfo b/biology/phylip/distinfo index a88988aeb874..843307f3a8cd 100644 --- a/biology/phylip/distinfo +++ b/biology/phylip/distinfo @@ -1,2 +1,2 @@ -SHA256 (phylip-3.695.tar.gz) = d843ecee0d6bcf57f4f23dc8ef064a668907cc69b4edd7626ff7afdd8d0de370 -SIZE (phylip-3.695.tar.gz) = 4364684 +SHA256 (phylip-3.696.tar.gz) = cd0a452ca51922142ad06d585e2ef98565536a227cbd2bd47a2243af72c84a06 +SIZE (phylip-3.696.tar.gz) = 3955721 diff --git a/biology/phylip/pkg-descr b/biology/phylip/pkg-descr index 33efe3e94f69..c6e1dd95c0a2 100644 --- a/biology/phylip/pkg-descr +++ b/biology/phylip/pkg-descr @@ -1,17 +1,8 @@ - PHYLIP - Phylogeny Inference Package (version 3.6) - PHYLIP (the PHYLogeny Inference Package) is a package of programs for -inferring phylogenies (evolutionary trees). Methods that are -available in the package include parsimony, distance matrix, and -likelihood methods, including bootstrapping and consensus trees. Data -types that can be handled include molecular sequences, gene -frequencies, restriction sites, distance matrices, and 0/1 discrete -characters. - - Joe Felsenstein - Department of Genetics - University of Washington - Box 357360 - Seattle, Washington 98195-7360, U.S.A. +inferring phylogenies (evolutionary trees). Methods that are available +in the package include parsimony, distance matrix, and likelihood +methods, including bootstrapping and consensus trees. Data types that +can be handled include molecular sequences, gene frequencies, +restriction sites, distance matrices, and 0/1 discrete characters. WWW: http://evolution.genetics.washington.edu/phylip.html |