diff options
| -rw-r--r-- | science/hs-bio/Makefile | 9 | ||||
| -rw-r--r-- | science/hs-bio/distinfo | 4 | ||||
| -rw-r--r-- | science/hs-bio/pkg-descr | 16 |
3 files changed, 18 insertions, 11 deletions
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile index 7a5d97672cd8..378b5bcc7702 100644 --- a/science/hs-bio/Makefile +++ b/science/hs-bio/Makefile @@ -6,18 +6,19 @@ # PORTNAME= bio -PORTVERSION= 0.5.1 +PORTVERSION= 0.5.2 CATEGORIES= science haskell MAINTAINER= haskell@FreeBSD.org -COMMENT= A Haskell bioinformatics library +COMMENT= A bioinformatics library LICENSE= LGPL21 CABAL_SETUP= Setup.hs -USE_CABAL= binary>=0.4 mtl parallel parsec QuickCheck>=2 tagsoup>=0.8 -EXECUTABLE= fastout flx frecover frename flowclip orf rselect-pe +USE_CABAL= mtl parallel parsec QuickCheck>=2 tagsoup>=0.8 + +EXECUTABLE= fastout flowclip flx frecover frename orf rselect-pe .include "${.CURDIR}/../../lang/ghc/bsd.cabal.mk" .include <bsd.port.mk> diff --git a/science/hs-bio/distinfo b/science/hs-bio/distinfo index 793e98b3825f..5baf5e856109 100644 --- a/science/hs-bio/distinfo +++ b/science/hs-bio/distinfo @@ -1,2 +1,2 @@ -SHA256 (cabal/bio-0.5.1.tar.gz) = 256e1b34fc0c7fd21b3ec36e1e3903bed2afc56b6a819f26d8368dbea21561a9 -SIZE (cabal/bio-0.5.1.tar.gz) = 103846 +SHA256 (cabal/bio-0.5.2.tar.gz) = a3e10bef6bfa5187e34bdc1eac7616e7d4ef926173e95b73170f7580bda74070 +SIZE (cabal/bio-0.5.2.tar.gz) = 102316 diff --git a/science/hs-bio/pkg-descr b/science/hs-bio/pkg-descr index 91946cc0ba3f..d00fd7938f2f 100644 --- a/science/hs-bio/pkg-descr +++ b/science/hs-bio/pkg-descr @@ -1,7 +1,13 @@ -This is a collection of Haskell data structures and algorithms useful -for building bioinformatics-related tools and utilities. - -Current list of features includes: a Sequence data type supporting -protein and nucleotide sequences and conversion between them. +This is a collection of data structures and algorithms useful for +building bioinformatics-related tools and utilities. Current list of +features includes: a Sequence data type supporting protein and +nucleotide sequences and conversion between them. As of version 0.4, +different kinds of sequence have different types. Support for quality +data, reading and writing Fasta formatted files, reading TwoBit and phd +formats, and Roche/454 SFF files. Rudimentary (i.e. unoptimized) support +for doing alignments - including dynamic adjustment of scores based on +sequence quality. Also Blast output parsing. Partly implemented single +linkage clustering, and multiple alignment. Reading Gene Ontology (GO) +annotations (GOA) and definitions hierarchy. WWW: http://biohaskell.org/Libraries/Bio |