diff options
Diffstat (limited to 'biology/embassy/Makefile')
| -rw-r--r-- | biology/embassy/Makefile | 40 |
1 files changed, 22 insertions, 18 deletions
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile index 6c572598b54e..5d3ed872749a 100644 --- a/biology/embassy/Makefile +++ b/biology/embassy/Makefile @@ -7,18 +7,21 @@ # PORTNAME= embassy -PORTVERSION= 2.10.0 +PORTVERSION= 3.0.0 CATEGORIES= biology -MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \ +MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/ \ + ftp://ftp.uk.embnet.org/pub/EMBOSS/ \ ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \ ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/ -DIST_SUBDIR= ${PORTNAME} +DIST_SUBDIR= emboss MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= A collection of contributed EMBOSS applications -LIB_DEPENDS= nucleus.1:${PORTSDIR}/biology/emboss +LIB_DEPENDS= nucleus.3:${PORTSDIR}/biology/emboss +PREFIX?= ${LOCALBASE}/emboss +NO_MTREE= yes USE_SUBMAKE= yes USE_ICONV= yes USE_GMAKE= yes @@ -26,12 +29,17 @@ GNU_CONFIGURE= yes USE_XLIB= yes USE_MOTIF= yes -OPTIONS= DOMAINATRIX "Protein structure and domain apps" on \ +OPTIONS= DOMAINATRIX "Protein domain apps" on \ + DOMALIGN "Protein domain apps" on \ + DOMSEARCH "Protein domain apps" on \ + SIGNATURE "Protein domain apps" on \ + STRUCTURE "Protein domain apps" on \ EMNU "EMBOSS simple menu" on \ ESIM4 "Align cDNA/EST to genome" on \ HMMER "HMM alignment and searches" on \ MEME "Motif detection" on \ MSE "A multiple sequence screen editor" on \ + MYEMBOSS "Examples for developers of EMBOSS apps" on \ PHYLIP "Phylogeny inference" on \ TOPO "Transmembrane display" on @@ -39,15 +47,21 @@ CONFIGURE_ENV+= CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include" \ LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib" EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY -DOMAINATRIX_VERSION= 1.0.0 +DOMAINATRIX_VERSION= 0.1.0 EMNU_VERSION= 1.05 ESIM4_VERSION= 1.0.0 HMMER_VERSION= 2.1.1 MEME_VERSION= 2.3.1 MSE_VERSION= 1.0.0 TOPO_VERSION= 1.0.0 -PHYLIP_VERSION= 3.57c -EMBASSY_APPS= DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP TOPO +PHYLIP_VERSION= 3.6b +DOMALIGN_VERSION= 0.1.0 +DOMSEARCH_VERSION= 0.1.0 +SIGNATURE_VERSION= 0.1.0 +STRUCTURE_VERSION= 0.1.0 +MYEMBOSS_VERSION= 3.0.0 +EMBASSY_APPS= DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP TOPO \ + DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS .include <bsd.port.pre.mk> @@ -75,16 +89,6 @@ do-extract: fi .endfor -.if !defined(WITHOUT_DOMAINATRIX) -pre-configure:: - @${PATCH} ${PATCH_ARGS} < ${PATCHDIR}/domainatrix-patch-Makefile.in -.endif - -.if !defined(WITHOUT_EMNU) -pre-configure:: - @${PATCH} ${PATCH_ARGS} < ${PATCHDIR}/emnu-patch-Makefile.in -.endif - do-configure: .for app in ${APPLIST} @ cd ${${app}_WRKSRC} && \ |