2 files changed, 36 insertions, 0 deletions
diff --git a/biology/fasttree/files/Makefile b/biology/fasttree/files/Makefile
new file mode 100644
index 000000000000..ada070cda53b
--- /dev/null
+++ b/biology/fasttree/files/Makefile
@@ -0,0 +1,25 @@
+
+BIN =		FastTree
+SRC =		FastTree*.c
+CC ?=		gcc
+CFLAGS ?=	-O3
+CFLAGS +=	-DOPENMP -fopenmp -finline-functions -funroll-loops
+
+MKDIR ?=	mkdir
+INSTALL ?=	install
+PREFIX ?=	/usr/local
+DESTDIR ?=	.
+
+.PHONY:	all install clean
+
+all:	${BIN}
+
+${BIN}: ${SRC} Makefile
+	${CC} ${CFLAGS} ${SRC} -o ${BIN} -lm
+
+install: ${BIN}
+	${MKDIR} -p ${DESTDIR}${PREFIX}/bin
+	${INSTALL} -s -c ${BIN} ${DESTDIR}${PREFIX}/bin
+
+clean:
+	${RM} -f ${BIN}
diff --git a/biology/fasttree/files/patch-FastTree-2.1.10.c b/biology/fasttree/files/patch-FastTree-2.1.10.c
new file mode 100644
index 000000000000..36dd31ceb877
--- /dev/null
+++ b/biology/fasttree/files/patch-FastTree-2.1.10.c
@@ -0,0 +1,11 @@
+--- FastTree-2.1.10.c.orig	2017-12-04 15:09:11 UTC
++++ FastTree-2.1.10.c
+@@ -8759,7 +8759,7 @@ double pnorm(double x)
+ 
+ void *mymalloc(size_t sz) {
+   if (sz == 0) return(NULL);
+-  void *new = malloc(sz);
++  void *new = aligned_alloc(16, sz);
+   if (new == NULL) {
+     fprintf(stderr, "Out of memory\n");
+     exit(1);