diff options
Diffstat (limited to 'biology/p5-Bio-Graphics')
| -rw-r--r-- | biology/p5-Bio-Graphics/Makefile | 205 | ||||
| -rw-r--r-- | biology/p5-Bio-Graphics/distinfo | 5 | ||||
| -rw-r--r-- | biology/p5-Bio-Graphics/pkg-plist | 187 |
3 files changed, 201 insertions, 196 deletions
diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile index 364424cc49f0..f4fe2966cbd2 100644 --- a/biology/p5-Bio-Graphics/Makefile +++ b/biology/p5-Bio-Graphics/Makefile @@ -6,120 +6,121 @@ # PORTNAME= Bio-Graphics -PORTVERSION= 2.14 +PORTVERSION= 2.15 CATEGORIES= biology perl5 MASTER_SITES= CPAN -MASTER_SITE_SUBDIR= ../../authors/id/L/LD/LDS PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org COMMENT= Generate GD Images of Bio::Seq Objects -BUILD_DEPENDS= p5-GD>=2.3:${PORTSDIR}/graphics/p5-GD \ +RUN_DEPENDS= p5-Bio-SCF>=1.01:${PORTSDIR}/biology/p5-Bio-SCF \ + p5-GD>=2.3:${PORTSDIR}/graphics/p5-GD \ p5-GD-SVG>=0.32:${PORTSDIR}/graphics/p5-GD-SVG \ p5-Statistics-Descriptive>=2.6:${PORTSDIR}/math/p5-Statistics-Descriptive \ - p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl \ - p5-Bio-SCF>=1.01:${PORTSDIR}/biology/p5-Bio-SCF -RUN_DEPENDS= ${BUILD_DEPENDS} + p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl PERL_MODBUILD= YES -MAN1= contig_draw.pl.1 feature_draw.pl.1 \ - frend.pl.1 search_overview.pl.1 +MAN1= contig_draw.pl.1 \ + feature_draw.pl.1 \ + frend.pl.1 \ + search_overview.pl.1 -MAN3= Bio::Graphics.3 \ - Bio::Graphics::Glyph::transcript2.3 \ - Bio::Graphics::Glyph::extending_arrow.3 \ - Bio::Graphics::Wiggle.3 \ - Bio::Graphics::ConfiguratorI.3 \ - Bio::Graphics::DrawTransmembrane.3 \ - Bio::Graphics::Feature.3 \ - Bio::Graphics::FeatureBase.3 \ - Bio::Graphics::FeatureDir.3 \ - Bio::Graphics::FeatureFile.3 \ - Bio::Graphics::FeatureFile::Iterator.3 \ - Bio::Graphics::Glyph.3 \ - Bio::Graphics::Glyph::Factory.3 \ - Bio::Graphics::Glyph::alignment.3 \ - Bio::Graphics::Glyph::allele_tower.3 \ - Bio::Graphics::Glyph::anchored_arrow.3 \ - Bio::Graphics::Glyph::arrow.3 \ - Bio::Graphics::Glyph::box.3 \ - Bio::Graphics::Glyph::broken_line.3 \ - Bio::Graphics::Glyph::cds.3 \ - Bio::Graphics::Glyph::christmas_arrow.3 \ - Bio::Graphics::Glyph::crossbox.3 \ - Bio::Graphics::Glyph::dashed_line.3 \ - Bio::Graphics::Glyph::diamond.3 \ - Bio::Graphics::Glyph::dna.3 \ - Bio::Graphics::Glyph::dot.3 \ - Bio::Graphics::Glyph::dumbbell.3 \ - Bio::Graphics::Glyph::ellipse.3 \ - Bio::Graphics::Glyph::ex.3 \ - Bio::Graphics::Glyph::fixedwidth.3 \ - Bio::Graphics::Glyph::flag.3 \ - Bio::Graphics::Glyph::gene.3 \ - Bio::Graphics::Glyph::generic.3 \ - Bio::Graphics::Glyph::graded_segments.3 \ - Bio::Graphics::Glyph::group.3 \ - Bio::Graphics::Glyph::hat.3 \ - Bio::Graphics::Glyph::heat_map.3 \ - Bio::Graphics::Glyph::heat_map_ideogram.3 \ - Bio::Graphics::Glyph::heterogeneous_segments.3 \ - Bio::Graphics::Glyph::hidden.3 \ - Bio::Graphics::Glyph::hybrid_plot.3 \ - Bio::Graphics::Glyph::ideogram.3 \ - Bio::Graphics::Glyph::image.3 \ - Bio::Graphics::Glyph::lightning.3 \ - Bio::Graphics::Glyph::line.3 \ - Bio::Graphics::Glyph::merge_parts.3 \ - Bio::Graphics::Glyph::merged_alignment.3 \ - Bio::Graphics::Glyph::minmax.3 \ - Bio::Graphics::Glyph::oval.3 \ - Bio::Graphics::Glyph::pentagram.3 \ - Bio::Graphics::Glyph::pairplot.3 \ - Bio::Graphics::Glyph::phylo_align.3 \ - Bio::Graphics::Glyph::pinsertion.3 \ - Bio::Graphics::Glyph::primers.3 \ - Bio::Graphics::Glyph::processed_transcript.3 \ - Bio::Graphics::Glyph::protein.3 \ - Bio::Graphics::Glyph::ragged_ends.3 \ - Bio::Graphics::Glyph::rainbow_gene.3 \ - Bio::Graphics::Glyph::redgreen_box.3 \ - Bio::Graphics::Glyph::redgreen_segment.3 \ - Bio::Graphics::Glyph::repeating_shape.3 \ - Bio::Graphics::Glyph::rndrect.3 \ - Bio::Graphics::Glyph::ruler_arrow.3 \ - Bio::Graphics::Glyph::saw_teeth.3 \ - Bio::Graphics::Glyph::segmented_keyglyph.3 \ - Bio::Graphics::Glyph::segments.3 \ - Bio::Graphics::Glyph::so_transcript.3 \ - Bio::Graphics::Glyph::span.3 \ - Bio::Graphics::Glyph::spectrogram.3 \ - Bio::Graphics::Glyph::splice_site.3 \ - Bio::Graphics::Glyph::stackedplot.3 \ - Bio::Graphics::Glyph::ternary_plot.3 \ - Bio::Graphics::Glyph::text_in_box.3 \ - Bio::Graphics::Glyph::three_letters.3 \ - Bio::Graphics::Glyph::tic_tac_toe.3 \ - Bio::Graphics::Glyph::toomany.3 \ - Bio::Graphics::Glyph::trace.3 \ - Bio::Graphics::Glyph::track.3 \ - Bio::Graphics::Glyph::transcript.3 \ - Bio::Graphics::Glyph::translation.3 \ - Bio::Graphics::Glyph::triangle.3 \ - Bio::Graphics::Glyph::two_bolts.3 \ - Bio::Graphics::Glyph::wave.3 \ - Bio::Graphics::Glyph::weighted_arrow.3 \ - Bio::Graphics::Glyph::whiskerplot.3 \ - Bio::Graphics::Glyph::wiggle_box.3 \ - Bio::Graphics::Glyph::wiggle_density.3 \ - Bio::Graphics::Glyph::wiggle_xyplot.3 \ - Bio::Graphics::Glyph::xyplot.3 \ - Bio::Graphics::Panel.3 \ - Bio::Graphics::Pictogram.3 \ - Bio::Graphics::RendererI.3 \ - Bio::Graphics::Util.3 \ - Bio::Graphics::Wiggle::Loader.3 +MAN3= Bio::Graphics.3 \ + Bio::Graphics::Glyph::transcript2.3 \ + Bio::Graphics::Glyph::extending_arrow.3 \ + Bio::Graphics::Wiggle.3 \ + Bio::Graphics::ConfiguratorI.3 \ + Bio::Graphics::DrawTransmembrane.3 \ + Bio::Graphics::Feature.3 \ + Bio::Graphics::FeatureBase.3 \ + Bio::Graphics::FeatureDir.3 \ + Bio::Graphics::FeatureFile.3 \ + Bio::Graphics::FeatureFile::Iterator.3 \ + Bio::Graphics::Glyph.3 \ + Bio::Graphics::Glyph::Factory.3 \ + Bio::Graphics::Glyph::alignment.3 \ + Bio::Graphics::Glyph::allele_tower.3 \ + Bio::Graphics::Glyph::anchored_arrow.3 \ + Bio::Graphics::Glyph::arrow.3 \ + Bio::Graphics::Glyph::box.3 \ + Bio::Graphics::Glyph::broken_line.3 \ + Bio::Graphics::Glyph::cds.3 \ + Bio::Graphics::Glyph::christmas_arrow.3 \ + Bio::Graphics::Glyph::crossbox.3 \ + Bio::Graphics::Glyph::dashed_line.3 \ + Bio::Graphics::Glyph::diamond.3 \ + Bio::Graphics::Glyph::dna.3 \ + Bio::Graphics::Glyph::dot.3 \ + Bio::Graphics::Glyph::dumbbell.3 \ + Bio::Graphics::Glyph::ellipse.3 \ + Bio::Graphics::Glyph::ex.3 \ + Bio::Graphics::Glyph::fixedwidth.3 \ + Bio::Graphics::Glyph::flag.3 \ + Bio::Graphics::Glyph::gene.3 \ + Bio::Graphics::Glyph::generic.3 \ + Bio::Graphics::Glyph::graded_segments.3 \ + Bio::Graphics::Glyph::group.3 \ + Bio::Graphics::Glyph::hat.3 \ + Bio::Graphics::Glyph::heat_map.3 \ + Bio::Graphics::Glyph::heat_map_ideogram.3 \ + Bio::Graphics::Glyph::heterogeneous_segments.3 \ + Bio::Graphics::Glyph::hidden.3 \ + Bio::Graphics::Glyph::hybrid_plot.3 \ + Bio::Graphics::Glyph::ideogram.3 \ + Bio::Graphics::Glyph::image.3 \ + Bio::Graphics::Glyph::lightning.3 \ + Bio::Graphics::Glyph::line.3 \ + Bio::Graphics::Glyph::merge_parts.3 \ + Bio::Graphics::Glyph::merged_alignment.3 \ + Bio::Graphics::Glyph::minmax.3 \ + Bio::Graphics::Glyph::oval.3 \ + Bio::Graphics::Glyph::pairplot.3 \ + Bio::Graphics::Glyph::pentagram.3 \ + Bio::Graphics::Glyph::phylo_align.3 \ + Bio::Graphics::Glyph::pinsertion.3 \ + Bio::Graphics::Glyph::primers.3 \ + Bio::Graphics::Glyph::processed_transcript.3 \ + Bio::Graphics::Glyph::protein.3 \ + Bio::Graphics::Glyph::ragged_ends.3 \ + Bio::Graphics::Glyph::rainbow_gene.3 \ + Bio::Graphics::Glyph::redgreen_box.3 \ + Bio::Graphics::Glyph::redgreen_segment.3 \ + Bio::Graphics::Glyph::repeating_shape.3 \ + Bio::Graphics::Glyph::rndrect.3 \ + Bio::Graphics::Glyph::ruler_arrow.3 \ + Bio::Graphics::Glyph::saw_teeth.3 \ + Bio::Graphics::Glyph::segmented_keyglyph.3 \ + Bio::Graphics::Glyph::segments.3 \ + Bio::Graphics::Glyph::so_transcript.3 \ + Bio::Graphics::Glyph::span.3 \ + Bio::Graphics::Glyph::spectrogram.3 \ + Bio::Graphics::Glyph::splice_site.3 \ + Bio::Graphics::Glyph::stackedplot.3 \ + Bio::Graphics::Glyph::ternary_plot.3 \ + Bio::Graphics::Glyph::text_in_box.3 \ + Bio::Graphics::Glyph::three_letters.3 \ + Bio::Graphics::Glyph::tic_tac_toe.3 \ + Bio::Graphics::Glyph::toomany.3 \ + Bio::Graphics::Glyph::trace.3 \ + Bio::Graphics::Glyph::track.3 \ + Bio::Graphics::Glyph::transcript.3 \ + Bio::Graphics::Glyph::translation.3 \ + Bio::Graphics::Glyph::triangle.3 \ + Bio::Graphics::Glyph::two_bolts.3 \ + Bio::Graphics::Glyph::vista_plot.3 \ + Bio::Graphics::Glyph::wave.3 \ + Bio::Graphics::Glyph::weighted_arrow.3 \ + Bio::Graphics::Glyph::whiskerplot.3 \ + Bio::Graphics::Glyph::wiggle_box.3 \ + Bio::Graphics::Glyph::wiggle_density.3 \ + Bio::Graphics::Glyph::wiggle_xyplot.3 \ + Bio::Graphics::Glyph::xyplot.3 \ + Bio::Graphics::Panel.3 \ + Bio::Graphics::Pictogram.3 \ + Bio::Graphics::RendererI.3 \ + Bio::Graphics::Util.3 \ + Bio::Graphics::Wiggle::Loader.3 .include <bsd.port.mk> diff --git a/biology/p5-Bio-Graphics/distinfo b/biology/p5-Bio-Graphics/distinfo index 5c4b1f21b29b..cdc29eb4ce57 100644 --- a/biology/p5-Bio-Graphics/distinfo +++ b/biology/p5-Bio-Graphics/distinfo @@ -1,3 +1,2 @@ -MD5 (Bio-Graphics-2.14.tar.gz) = 8a19807fb3f5c91551066956c17cd933 -SHA256 (Bio-Graphics-2.14.tar.gz) = 78ce70c48ac72ba12d694a1c0e57ff4ef2a2b9d477f828586f4430013acd5d62 -SIZE (Bio-Graphics-2.14.tar.gz) = 780551 +SHA256 (Bio-Graphics-2.15.tar.gz) = bee91112c1e8be1f90215d5d965077fc0c8c8fd3a24da4f28a270fa337266376 +SIZE (Bio-Graphics-2.15.tar.gz) = 856073 diff --git a/biology/p5-Bio-Graphics/pkg-plist b/biology/p5-Bio-Graphics/pkg-plist index 5cb564388b6c..bf5da506e9ba 100644 --- a/biology/p5-Bio-Graphics/pkg-plist +++ b/biology/p5-Bio-Graphics/pkg-plist @@ -1,108 +1,113 @@ -bin/glyph_help.pl -bin/contig_draw.pl -bin/feature_draw.pl -bin/frend.pl -bin/render_msa.pl -bin/search_overview.pl -%%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/cross.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/phylo_align.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/pairplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/rainbow_gene.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/spectrogram.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/hat.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/hidden.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/smoothing.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/stackedplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_density.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/fixedwidth.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_box.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_whiskers.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ternary_plot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_minmax.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_xyplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map_ideogram.pm -%%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm +@comment $FreeBSD$ +%%SITE_PERL%%/Bio/Graphics.pm +%%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm %%SITE_PERL%%/Bio/Graphics/DrawTransmembrane.pm +%%SITE_PERL%%/Bio/Graphics/Feature.pm %%SITE_PERL%%/Bio/Graphics/FeatureBase.pm %%SITE_PERL%%/Bio/Graphics/FeatureDir.pm -%%SITE_PERL%%/Bio/Graphics/RendererI.pm -%%SITE_PERL%%/Bio/Graphics/Util.pm -%%SITE_PERL%%/Bio/Graphics/Pictogram.pm -%%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm %%SITE_PERL%%/Bio/Graphics/FeatureFile.pm -%%SITE_PERL%%/Bio/Graphics/Feature.pm -%%SITE_PERL%%/Bio/Graphics/Panel.pm +%%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm %%SITE_PERL%%/Bio/Graphics/Glyph.pm -%%SITE_PERL%%/Bio/Graphics.pm -%%SITE_PERL%%/Bio/Graphics/Wiggle.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/track.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/generic.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/saw_teeth.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/pentagram.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/image.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/christmas_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/flag.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/Factory.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/alignment.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/allele_tower.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/anchored_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/box.pm %%SITE_PERL%%/Bio/Graphics/Glyph/broken_line.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ellipse.pm %%SITE_PERL%%/Bio/Graphics/Glyph/cds.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/protein.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/repeating_shape.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/graded_segments.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/merge_parts.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/weighted_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/splice_site.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/wave.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/xyplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/gene.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ragged_ends.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/segments.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ex.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/christmas_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/cross.pm %%SITE_PERL%%/Bio/Graphics/Glyph/crossbox.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/lightning.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/merged_alignment.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/ruler_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/rndrect.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/span.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/pinsertion.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/two_bolts.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/primers.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/dashed_line.pm %%SITE_PERL%%/Bio/Graphics/Glyph/diamond.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dna.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/dot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dumbbell.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/box.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/toomany.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/minmax.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/whiskerplot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_box.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/alignment.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/triangle.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/tic_tac_toe.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/transcript2.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/text_in_box.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ellipse.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ex.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/extending_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/fixedwidth.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/flag.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/gene.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/generic.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/graded_segments.pm %%SITE_PERL%%/Bio/Graphics/Glyph/group.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/translation.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/three_letters.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/line.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hat.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/heat_map_ideogram.pm %%SITE_PERL%%/Bio/Graphics/Glyph/heterogeneous_segments.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/extending_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/transcript.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hidden.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/image.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/lightning.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/line.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/merge_parts.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/merged_alignment.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/minmax.pm %%SITE_PERL%%/Bio/Graphics/Glyph/oval.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/dashed_line.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/dot.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/Factory.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/so_transcript.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/pairplot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/pentagram.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/phylo_align.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/pinsertion.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/primers.pm %%SITE_PERL%%/Bio/Graphics/Glyph/processed_transcript.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/segmented_keyglyph.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/anchored_arrow.pm -%%SITE_PERL%%/Bio/Graphics/Glyph/allele_tower.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/protein.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ragged_ends.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/rainbow_gene.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/read_pair.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_box.pm %%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_segment.pm -@dirrm %%SITE_PERL%%/Bio/Graphics/FeatureFile -@dirrm %%SITE_PERL%%/Bio/Graphics/Wiggle -@dirrm %%SITE_PERL%%/Bio/Graphics/Glyph +%%SITE_PERL%%/Bio/Graphics/Glyph/repeating_shape.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/rndrect.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ruler_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/saw_teeth.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/segmented_keyglyph.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/segments.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/smoothing.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/so_transcript.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/span.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/spectrogram.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/splice_site.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/stackedplot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/ternary_plot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/text_in_box.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/three_letters.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/tic_tac_toe.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/toomany.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/track.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/transcript.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/transcript2.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/translation.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/triangle.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/two_bolts.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/vista_plot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/wave.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/weighted_arrow.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/whiskerplot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_box.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_density.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_minmax.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_whiskers.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_xyplot.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/xyplot.pm +%%SITE_PERL%%/Bio/Graphics/Layout.pm +%%SITE_PERL%%/Bio/Graphics/Panel.pm +%%SITE_PERL%%/Bio/Graphics/Pictogram.pm +%%SITE_PERL%%/Bio/Graphics/RendererI.pm +%%SITE_PERL%%/Bio/Graphics/Util.pm +%%SITE_PERL%%/Bio/Graphics/Wiggle.pm +%%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm +bin/contig_draw.pl +bin/feature_draw.pl +bin/frend.pl +bin/glyph_help.pl +bin/render_msa.pl +bin/search_overview.pl +@dirrmtry %%SITE_PERL%%/Bio/Graphics/Wiggle +@dirrmtry %%SITE_PERL%%/Bio/Graphics/Glyph +@dirrmtry %%SITE_PERL%%/Bio/Graphics/FeatureFile @dirrmtry %%SITE_PERL%%/Bio/Graphics +@dirrmtry %%SITE_PERL%%/Bio |