diff options
Diffstat (limited to 'biology/plink/files/patch-Makefile')
| -rw-r--r-- | biology/plink/files/patch-Makefile | 52 |
1 files changed, 52 insertions, 0 deletions
diff --git a/biology/plink/files/patch-Makefile b/biology/plink/files/patch-Makefile new file mode 100644 index 000000000000..cb1e7f5fc537 --- /dev/null +++ b/biology/plink/files/patch-Makefile @@ -0,0 +1,52 @@ +--- Makefile.orig 2009-10-10 11:00:20.000000000 -0500 ++++ Makefile 2012-09-07 08:24:26.000000000 -0500 +@@ -26,7 +26,7 @@ + WITH_WEBCHECK = 1 + FORCE_32BIT = + WITH_ZLIB = 1 +-WITH_LAPACK = ++WITH_LAPACK = 1 + FORCE_DYNAMIC = + + # Put C++ compiler here; Windows has it's own specific version +@@ -34,17 +34,17 @@ + CXX_WIN = c:\bin\mingw\bin\mingw32-g++.exe + + # Any other compiler flags here ( -Wall, -g, etc) +-CXXFLAGS = ++# CXXFLAGS = + + # Misc +-LIB_LAPACK = /usr/lib/liblapack.so.3 ++LIB_LAPACK = -L${LOCALBASE}/lib -llapack -lblas -lgfortran + + + # -------------------------------------------------------------------- + # Do not edit below this line + # -------------------------------------------------------------------- + +-CXXFLAGS += -O3 -I. ++CXXFLAGS += -I. + OUTPUT = plink + + # Some system specific flags +@@ -58,8 +58,8 @@ + endif + + ifeq ($(SYS),UNIX) +- CXXFLAGS += -DUNIX +- CXX = $(CXX_UNIX) ++ CXXFLAGS += -DUNIX -Dfopen64=fopen ++ CXX ?= $(CXX_UNIX) + ifndef FORCE_DYNAMIC + CXXFLAGS += -static + endif +@@ -128,7 +128,7 @@ + LIB += -ldl + endif + ifeq ($(SYS),UNIX) +-LIB += -ldl -lcrypt ++LIB += -lcrypt + endif + endif + |