diff options
Diffstat (limited to 'biology/py-biopython/Makefile')
| -rw-r--r-- | biology/py-biopython/Makefile | 41 |
1 files changed, 22 insertions, 19 deletions
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index e59a64a4cae6..2787d9a959ea 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -6,7 +6,7 @@ # PORTNAME= biopython -PORTVERSION= 1.00.a2 +PORTVERSION= 1.00.a3 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/Download/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -17,16 +17,14 @@ MAINTAINER= wjv@FreeBSD.org BUILD_DEPENDS= ${PYDISTUTILS} RUN_DEPENDS= ${PYTHON_SITELIBDIR}/Martel/__init__.py:${PORTSDIR}/textproc/py-martel \ - ${PYTHON_SITELIBDIR}/Numeric/Numeric.py:${PORTSDIR}/math/py-numeric - -# Biopython requires Python 2.0 or above: -PYTHON_VERSION= python2.1 + ${PYTHON_SITELIBDIR}/Numeric/Numeric.py:${PORTSDIR}/math/py-numeric \ + ${PYTHON_SITELIBDIR}/mx/TextTools/__init__.py:${PORTSDIR}/lang/py-mx-base +USE_PYTHON= yes PLIST_SUB+= PLIST_CORBA=${PLIST_CORBA} PLIST_OMNIORB=${PLIST_OMNIORB} \ PLIST_FNORB=${PLIST_FNORB} CPIO= cpio --quiet -pdum -R -DOCDIR= ${PREFIX}/share/doc/py-biopython -EGDIR= ${PREFIX}/share/examples/py-biopython +EXAMPLESDIR= ${PREFIX}/share/examples/${PORTNAME} # CORBA support (a.k.a Biopython-CORBA): # Set WITH_CORBA to enable CORBA support for the Biopython port. @@ -41,7 +39,7 @@ EGDIR= ${PREFIX}/share/examples/py-biopython # - ORBit is a very popular and elegant ORB. The ORBit-Python bindings are # used. # Since Fnorb is distributed under a non-free licence and ORBit support in -# Biopython-CORBA is not yet stable, "omniorb" is the default. +# Biopython-CORBA is reputedly not yet stable, "omniorb" is the default. CORBA_ORB?= omniorb CORBA_VERSION= 0.2.1 @@ -57,6 +55,7 @@ PLIST_OMNIORB= "" PLIST_FNORB= "@comment " .elif ${CORBA_ORB} == "fnorb" BUILD_DEPENDS+= ${PYTHON_SITELIBDIR}/Fnorb/__init__.py:${PORTSDIR}/devel/fnorb +RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/Fnorb/__init__.py:${PORTSDIR}/devel/fnorb CORBA_ORBNAME= Fnorb EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-build_helper.py PLIST_OMNIORB= "@comment " @@ -92,6 +91,9 @@ do-build: @ cd ${CORBA_WRKSRC} && ${PYTHON_CMD} setup.py build .endif +pre-install: + @ ${SH} ${PKGREQ} INSTALL + do-install: @ cd ${WRKSRC} && ${PYTHON_CMD} setup.py install -c -O1 \ --prefix=${PREFIX} @@ -102,24 +104,25 @@ do-install: post-install: .if !defined(NOPORTDOCS) - @ ${MKDIR} ${DOCDIR} + @ ${MKDIR} ${DOCSDIR} .for docfiles in *.txt *.tex *.py - @ ${INSTALL_DATA} ${WRKSRC}/Doc/${docfiles} ${DOCDIR} + @ ${INSTALL_DATA} ${WRKSRC}/Doc/${docfiles} ${DOCSDIR} .endfor - @ ${MKDIR} ${EGDIR} - @ ${INSTALL_DATA} ${WRKSRC}/Doc/examples/*.py ${EGDIR} + @ ${MKDIR} ${EXAMPLESDIR} + @ ${INSTALL_DATA} ${WRKSRC}/Doc/examples/*.py ${EXAMPLESDIR} @ cd ${WRKSRC} && find Scripts \ - | ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EGDIR} + | ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR} .if defined(WITH_CORBA) - @ ${MKDIR} ${DOCDIR}/BioCorba + @ ${MKDIR} ${DOCSDIR}/BioCorba .for docfiles in *.tex *.pdf - @ ${INSTALL_DATA} ${CORBA_WRKSRC}/Doc/${docfiles} ${DOCDIR}/BioCorba + @ ${INSTALL_DATA} ${CORBA_WRKSRC}/Doc/${docfiles} ${DOCSDIR}/BioCorba .endfor - @ ${MKDIR} ${EGDIR}/BioCorba + @ ${MKDIR} ${EXAMPLESDIR}/BioCorba @ cd ${CORBA_WRKSRC}/Doc/examples && find * \ - | ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EGDIR}/BioCorba - @ ${MKDIR} ${EGDIR}/BioCorba/Scripts - @ ${INSTALL_DATA} ${CORBA_WRKSRC}/Scripts/* ${EGDIR}/BioCorba/Scripts + | ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR}/BioCorba + @ ${MKDIR} ${EXAMPLESDIR}/BioCorba/Scripts + @ ${INSTALL_DATA} ${CORBA_WRKSRC}/Scripts/* \ + ${EXAMPLESDIR}/BioCorba/Scripts .endif # defined(WITH_CORBA) .endif # !defined(NOPORTDOCS) |