diff options
Diffstat (limited to 'biology/seqan/pkg-plist')
| -rw-r--r-- | biology/seqan/pkg-plist | 1298 |
1 files changed, 58 insertions, 1240 deletions
diff --git a/biology/seqan/pkg-plist b/biology/seqan/pkg-plist index 5d6f426890ff..0f486c3fd5a1 100644 --- a/biology/seqan/pkg-plist +++ b/biology/seqan/pkg-plist @@ -6,6 +6,7 @@ include/seqan/align/align_interface_wrapper.h include/seqan/align/align_iterator_base.h include/seqan/align/align_metafunctions.h include/seqan/align/align_traceback.h +include/seqan/align/aligned_sequence_concept.h include/seqan/align/alignment_algorithm_tags.h include/seqan/align/alignment_operations.h include/seqan/align/dp_algorithm_impl.h @@ -62,6 +63,26 @@ include/seqan/align_extend.h include/seqan/align_extend/align_extend.h include/seqan/align_extend/align_extend_base.h include/seqan/align_extend/dp_scout_xdrop.h +include/seqan/align_parallel.h +include/seqan/align_parallel/async_wave_execution_interface.h +include/seqan/align_parallel/dp_kernel_adaptor.h +include/seqan/align_parallel/dp_parallel_execution_policies.h +include/seqan/align_parallel/dp_parallel_scout.h +include/seqan/align_parallel/dp_parallel_scout_simd.h +include/seqan/align_parallel/dp_settings.h +include/seqan/align_parallel/dp_traits.h +include/seqan/align_parallel/parallel_align_interface.h +include/seqan/align_parallel/wavefront_alignment_executor.h +include/seqan/align_parallel/wavefront_alignment_result.h +include/seqan/align_parallel/wavefront_alignment_scheduler.h +include/seqan/align_parallel/wavefront_alignment_task.h +include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h +include/seqan/align_parallel/wavefront_task.h +include/seqan/align_parallel/wavefront_task_event.h +include/seqan/align_parallel/wavefront_task_executor.h +include/seqan/align_parallel/wavefront_task_queue.h +include/seqan/align_parallel/wavefront_task_scheduler.h +include/seqan/align_parallel/wavefront_task_util.h include/seqan/align_profile.h include/seqan/align_profile/add_to_profile.h include/seqan/align_profile/score_profile_seq.h @@ -84,6 +105,7 @@ include/seqan/arg_parse/arg_parse_exceptions.h include/seqan/arg_parse/arg_parse_option.h include/seqan/arg_parse/arg_parse_parse.h include/seqan/arg_parse/arg_parse_type_support.h +include/seqan/arg_parse/arg_parse_version_check.h include/seqan/arg_parse/argument_parser.h include/seqan/arg_parse/tool_doc.h include/seqan/arg_parse/xml_support.h @@ -137,7 +159,6 @@ include/seqan/basic/basic_math.h include/seqan/basic/basic_metaprogramming.h include/seqan/basic/basic_parallelism.h include/seqan/basic/basic_proxy.h -include/seqan/basic/basic_simd_vector.h include/seqan/basic/basic_smart_pointer.h include/seqan/basic/basic_stream.h include/seqan/basic/basic_tangle.h @@ -267,6 +288,7 @@ include/seqan/graph_algorithms/graph_algorithm_heap_tree.h include/seqan/graph_algorithms/graph_algorithm_hmm.h include/seqan/graph_algorithms/graph_algorithm_lis_his.h include/seqan/graph_algorithms/kruskal.h +include/seqan/graph_algorithms/maximum_weighted_matching.h include/seqan/graph_algorithms/path_growing.h include/seqan/graph_algorithms/prim.h include/seqan/graph_algorithms/single_source_shortest_path.h @@ -326,6 +348,7 @@ include/seqan/index/find2_backtracking.h include/seqan/index/find2_base.h include/seqan/index/find2_functors.h include/seqan/index/find2_index.h +include/seqan/index/find2_index_approx.h include/seqan/index/find2_index_multi.h include/seqan/index/find2_vstree_factory.h include/seqan/index/find_backtracking.h @@ -476,6 +499,8 @@ include/seqan/modifier/modifier_shortcuts.h include/seqan/modifier/modifier_string.h include/seqan/modifier/modifier_view.h include/seqan/parallel.h +include/seqan/parallel/enumerable_thread_local.h +include/seqan/parallel/enumerable_thread_local_iterator.h include/seqan/parallel/parallel_algorithms.h include/seqan/parallel/parallel_atomic_misc.h include/seqan/parallel/parallel_atomic_primitives.h @@ -488,6 +513,7 @@ include/seqan/parallel/parallel_sequence.h include/seqan/parallel/parallel_serializer.h include/seqan/parallel/parallel_splitting.h include/seqan/parallel/parallel_tags.h +include/seqan/parallel/parallel_thread_pool.h include/seqan/parse_lm.h include/seqan/parse_lm/local_match_store.h include/seqan/parse_lm/parse_blastn_tabular.h @@ -521,12 +547,33 @@ include/seqan/realign/realign_helper_functions.h include/seqan/reduced_aminoacid.h include/seqan/reduced_aminoacid/reduced_aminoacid_base.h include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h +include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h +include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h +include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h +include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h +include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h +include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h +include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h +include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h +include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h +include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h +include/seqan/rna_io.h +include/seqan/rna_io/bpseq_read_write.h +include/seqan/rna_io/connect_read_write.h +include/seqan/rna_io/dot_bracket_read_write.h +include/seqan/rna_io/ebpseq_read_write.h +include/seqan/rna_io/rna_header.h +include/seqan/rna_io/rna_io_context.h +include/seqan/rna_io/rna_record.h +include/seqan/rna_io/rna_struct_file.h +include/seqan/rna_io/stockholm_read_write.h +include/seqan/rna_io/vienna_read_write.h include/seqan/roi_io.h include/seqan/roi_io/read_roi.h include/seqan/roi_io/roi_file.h @@ -564,6 +611,7 @@ include/seqan/seeds/seeds_seed_set_scored.h include/seqan/seeds/seeds_seed_set_unordered.h include/seqan/seeds/seeds_seed_simple.h include/seqan/seq_io.h +include/seqan/seq_io/bam_sam.h include/seqan/seq_io/fai_index.h include/seqan/seq_io/fasta_fastq.h include/seqan/seq_io/genomic_region.h @@ -606,6 +654,14 @@ include/seqan/sequence_journaled/journal_entry.h include/seqan/sequence_journaled/sequence_journaled.h include/seqan/sequence_journaled/sequence_journaled_iterator.h include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h +include/seqan/simd.h +include/seqan/simd/simd_base.h +include/seqan/simd/simd_base_seqan_impl.h +include/seqan/simd/simd_base_seqan_impl_avx2.h +include/seqan/simd/simd_base_seqan_impl_avx512.h +include/seqan/simd/simd_base_seqan_impl_sse4.2.h +include/seqan/simd/simd_base_seqan_interface.h +include/seqan/simd/simd_base_umesimd_impl.h include/seqan/simple_intervals_io.h include/seqan/simple_intervals_io/simple_intervals_file.h include/seqan/simple_intervals_io/simple_intervals_io.h @@ -671,1243 +727,5 @@ include/seqan/vcf_io/vcf_io_context.h include/seqan/vcf_io/vcf_record.h include/seqan/vcf_io/write_vcf.h include/seqan/version.h +lib/cmake/seqan/seqan-config.cmake libdata/pkgconfig/seqan-2.pc -share/cmake/Modules/FindSeqAn.cmake -%%PORTDOCS%%%%DOCSDIR%%/CHANGELOG.rst -%%PORTDOCS%%%%DOCSDIR%%/LICENSE -%%PORTDOCS%%%%DOCSDIR%%/README.rst -%%PORTDOCS%%%%DOCSDIR%%/html/class_AFScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Accumulator.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Align.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlignCols.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlignConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlignQualityStoreElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlignTraceback.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlignedReadLayout.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlignedReadStoreElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlignmentStats.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Allocator.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AlphabetExpansion.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AnnotationStoreElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ArgParseArgument.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ArgumentParser.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_AsyncRequest.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BadAlloc.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BadCast.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BamAlignmentRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BamHeader.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BamHeaderRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BamIOContext.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BamIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BamTagsDict.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BedRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BedRgb.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BetaDistribution.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BidirectionalIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastIOContext.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastMatch.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastMatchField.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastProgramSelector.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastReport.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastScoringScheme.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastTabular.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastTabularLL.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BlastTabularSpecSelector.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_BufferedStream.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Bundle2.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Bundle3.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Bundle5.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_CigarElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_CompressedSA.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ConcatenatorManyToOne.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ConcurrentQueue.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ConsensusAlignerIllegalArgumentException.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ConsensusAlignmentOptions.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ConsensusScoreSequenceEntry.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ContainerView.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ContigFile.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ContigStoreElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_CyclicShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_DPBandConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_DefaultJstConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_DefaultSeedConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_DeltaMap.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Deque.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_EdgeStump.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Exception.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfigLarge.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfigSize.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FMIndexConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FaiIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_File.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FileMapping.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Finder.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FormattedFile.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FormattedNumber.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Fragment.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FragmentStore.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FunctorComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FunctorConvert.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FunctorLowcase.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_FunctorUpcase.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_GapAnchor.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Gaps.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_GapsIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_GenomicRegion.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_GffRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Graph.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Holder.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_IOError.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_IdManager.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Index.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_InternalPointerPropertyMap.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_InternalPropertyMap.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_IntervalAndCargo.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_IntervalTree.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_IntervalTreeNode.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Iter.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_JoinConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_JournaledStringTree.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LF.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Lexical.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LibraryStoreElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LocalAlignmentEnumerator.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LocalMatch.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LocalMatchStore.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LocalMatchStoreConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LogProb.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Loop.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_LoopReverse.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_MMapConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Map.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_MarkovModel.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_MatePairStoreElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Matrix.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ModifiedAlphabet.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ModifiedIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ModifiedString.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_MsaOptions.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_NameStoreCache.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Pair.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Pattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_PigeonholeParameters.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Pipe.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_PointAndCargo.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Pool.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_PriorityType.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ProfileChar.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Proxy.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Range.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_RankDictionary.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_RankSupportBitString.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ReadStoreElement.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Repeat.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_RevTextFibre.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_RightArrayBinaryTree.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_RuntimeError.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Score.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Seed.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SeedDiagonal.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SeedSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Segment.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SentinelRankDictionary.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SequenceOutputOptions.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Shape.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SimpleIntervalsIOContext.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SimpleType.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SparseString.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Splitter.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_StreamBuffer.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_String.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_StringEnumerator.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_StringSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_SwiftParameters.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_TabixIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Tag.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_TagList.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_TagSelector.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ToStdAllocator.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_ToolDoc.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Triple.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_Tuple.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_UcscIOContext.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_UcscRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_UnionFind.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_VcfHeader.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_VcfHeaderRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_VcfIOContext.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_VcfRecord.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_VirtualStream.html -%%PORTDOCS%%%%DOCSDIR%%/html/class_VolatilePtr.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_AggregateConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_AlphabetConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_AlphabetWithGapsConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_AlphabetWithQualitiesConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_AlphabetWithUnknownValueConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_AssignableConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_BidirectionalIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_BidirectionalStreamConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_ComparableConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_ContainerConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_ConvertibleConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_CopyConstructibleConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_DefaultConstructibleConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_DestructibleConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_EqualityComparableConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_FiniteOrderedAlphabetConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_FormattedFileHeaderConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_FormattedFileRecordConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_ForwardContainerConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_ForwardIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_GraphOverAlphabetConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_HostedConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_InputIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_InputStreamConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_IntegerConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_IteratorAssociatedTypesConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_LessThanComparableConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableBidirectionalIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableForwardIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableRandomAccessIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableRootedIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableRootedRandomAccessIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_NumberConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_OrderedAlphabetConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_OutputIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_OutputStreamConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_PropertyMapConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_RandomAccessContainerConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_RandomAccessIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_ReversibleContainerConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_RootedIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_RootedRandomAccessIteratorConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_SegmentableConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_SignedIntegerConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_StreamConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_StringConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_StringIndexConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_StringTreeConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_StringTrieConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_TextConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/concept_UnsignedIntegerConcept.html -%%PORTDOCS%%%%DOCSDIR%%/html/css/common.less -%%PORTDOCS%%%%DOCSDIR%%/html/css/common.less.css -%%PORTDOCS%%%%DOCSDIR%%/html/css/custom.css -%%PORTDOCS%%%%DOCSDIR%%/html/css/full_list.css -%%PORTDOCS%%%%DOCSDIR%%/html/css/main.css -%%PORTDOCS%%%%DOCSDIR%%/html/css/reset.css -%%PORTDOCS%%%%DOCSDIR%%/html/css/rules.less -%%PORTDOCS%%%%DOCSDIR%%/html/css/style.css -%%PORTDOCS%%%%DOCSDIR%%/html/demos/blast/blast_in_lowlevel.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/blast/blast_in_lowlevel.cpp.stdout_ -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/align.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/align.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/compute_alignment_stats.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/compute_alignment_stats.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/gaps_example.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/gaps_example.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/global_alignment_banded.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/global_alignment_banded.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/global_alignment_unbanded.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/global_alignment_unbanded.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/integrate_align.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align/integrate_align.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align_extend/extend_alignment.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align_extend/extend_alignment.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align_profile/profile_seq_frac_score.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align_profile/profile_seq_score.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align_split/split_alignment.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/align_split/split_alignment.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/arg_parse/argument_parser.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/bam_io/bam_tags_dict.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/bam_io/bam_tags_dict.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/enable_if.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/metaprogramming_control.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/metaprogramming_logic.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/metaprogramming_math.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/metaprogramming_switch.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/simple_type_construction.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/zip_iterator.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/basic/zip_iterator.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/consensus/consensus_alignment.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/consensus/consensus_alignment.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/find/finder_aho_corasick.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/find/finder_index.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/find/finder_index.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/find/finder_online.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/find/finder_online.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/breadth_first_search.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/breadth_first_search.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/dag_shortest_path.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/dag_shortest_path.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/depth_first_search.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/depth_first_search.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/dijkstra.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/dijkstra.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/heaviest_increasing_subsequence.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/kruskals_algorithm.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/kruskals_algorithm.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/longest_common_subsequence.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/longest_increasing_subsequence.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/prims_algorithm.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/prims_algorithm.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/strongly_connected_components.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/strongly_connected_components.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/topological_sort.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/topological_sort.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/transitive_closure.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_algorithms/transitive_closure.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_align/graph_align.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_types/graph_algo_dijkstra.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/graph_types/graph_algo_dijkstra.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/begin_atEnd_representative.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/begin_atEnd_representative.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/begin_atEnd_representative_bottomUp.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/begin_range_goDown_representative_repLength.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/counting.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/counting.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/find_repeats.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/finder.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/finder.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/iterator.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/iterator.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/iterator_short.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/iterator_short.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/length_countSequences.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/length_countSequences.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/maxrepeats.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/mummy.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/mums.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/node_predicate.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/open_save.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/open_save.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/shape_hash_init.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/sufarray.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/supermaxrepeats.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/misc/enumerate_strings.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/misc/enumerate_strings.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/misc/get_terminal_size.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/misc/interval_tree_example.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/misc/name_store_cache.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/misc/name_store_cache.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/cyclic_shape.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/cyclic_shape.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/cyclic_shape_snippets.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/modified_string.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/modified_string.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/modified_string_mod_view.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/modified_string_mod_view.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/modified_string_nested.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/modifier/modified_string_nested.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/parallel/queue_example.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/parallel/queue_example.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/parallel/splitter_example.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/parallel/splitter_example.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/pipe/pool_sorter.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/score/score.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/score/score.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/seeds/seeds_add_seed.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/seeds/seeds_chaining.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/seeds/seeds_chaining.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/seeds/seeds_extension.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/seeds/seeds_extension.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/seq_io/fai_index_example.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/seq_io/fai_index_example.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/container_view_zip.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/container_view_zip.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/segment.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/string.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/string2.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/string2.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/stringset.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/sequence/stringset.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/statistics/build_markov_model.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/statistics/load_markov_model.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/store/store_example.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/stream/lexical_cast.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/demos/dox/stream/lexical_cast.cpp.stdout -%%PORTDOCS%%%%DOCSDIR%%/html/demos/tutorial/sam_and_bam_io/example.sam -%%PORTDOCS%%%%DOCSDIR%%/html/demos/tutorial/sam_and_bam_io/solution1.cpp -%%PORTDOCS%%%%DOCSDIR%%/html/enum_AminoAcidScoreMatrixID.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_ArgParseArgument_58_58ArgumentType.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_ArgumentParser_58_58ParseResult.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_BamFlags.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_BamHeaderRecordType.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_BamSortOrder.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_BlastMatchField_58_58Enum.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_BlastProgram.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_BlastTabularSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_DeltaType.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_ExtensionDirection.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_FileMappingAdvise.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_FileMappingMode.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_FileOpenMode.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_FragmentStore_58_58PredefinedAnnotationTypes.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_GeneticCodeSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/enum_TranslationFrames.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_TView.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_addToProfile.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_alignmentEvaluation.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_alignmentFreeComparison.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_allPairsShortestPath.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayClearSpace.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayConstruct.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayConstructCopy.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayConstructMove.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayCopy.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayCopyBackward.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayCopyForward.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayDestruct.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayFill.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayMove.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayMoveBackward.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_arrayMoveForward.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_assignQualities.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_assignTagsBamToSam.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_assignTagsSamToBam.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_atomicMax.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_atomicMin.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_bandedChainAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_bellmanFordAlgorithm.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_bitScanForward.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_bitScanReverse.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_breadthFirstSearch.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_buildAlignmentGraph.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_bundle2.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_bundle3.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_bundle5.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_calcBetaDistParam.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_calcLogNormalDistParam.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_calculateCovariance.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_calculateOverlapIndicator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_calculatePeriodicity.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_calculateProbability.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_calculateVariance.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_chainSeedsGlobally.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_clearAllBits.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_clearBit.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_complement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_computeAlignmentStats.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_computeSplitters.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_connectedComponents.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_consensusAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_convert.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_convertImpl.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_convertQuality.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_countKmers.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_cpuTime.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_createBWTable.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_createInvSuffixArray.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_createLcpTable.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_createSuffixArray.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_cutNs.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_dagShortestPath.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_defaultRng.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_depthFirstSearch.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_dijkstra.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_endsWith.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_expectation.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_extendAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_findRepeats.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_floydWarshallAlgorithm.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_fordFulkersonAlgorithm.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_getAbsolutePath.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_getBamTypeChar.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_getBamTypeSize.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_getTerminalSize.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_globalAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_globalAlignmentScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_globalMsaAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_guessFormatFromFilename.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_heaviestIncreasingSubsequence.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_ignoreUnusedVariableWarning.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_integrateAlign.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_isAnsiColorTerminal.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_isBitSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_isTerminal.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_kruskalsAlgorithm.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_lexicalCast.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_lexicalCastWithException.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_localAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_log2.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_longestCommonSubsequence.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_longestIncreasingSubsequence.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_lowerBoundAlignedReads.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_makeZipIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_makeZipView.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_matchRefinement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_memset.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_njTree.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_orderOccurrences.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_partialSum.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_popCount.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_primsAlgorithm.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_printDebugLevel.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_progressiveAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_reAlign.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_reAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_readEmblHeader.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_reverse.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_reverseComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_setBit.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_setBitTo.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_shareResources.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_shuffle.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_sortAlignedReads.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_splitAlignment.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_splitGenBankHeader.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_startsWith.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_stringToStringSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_stronglyConnectedComponents.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_sum.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_sumOfPairsScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_sysTime.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_testAllOnes.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_testAllZeros.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_toLower.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_toUpper.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_topologicalSort.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_transitiveClosure.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_translate.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_tripletLibraryExtension.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_upgmaTree.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_upperBoundAlignedReads.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_valueConstruct.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_valueDestruct.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_variance.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_weaklyConnectedComponents.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_function_zscore.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_AllowsFastRandomAccess.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_BasicStream.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_BytesPerValue.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Cargo.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Chunk.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Comparator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_CompareType.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_CompareTypeImpl.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Convert.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_DeepestSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_DefaultFindBeginPatternSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_DefaultFinder.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_DefaultOverflowExplicit.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_DefaultOverflowImplicit.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_DefaultPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_DefaultPrefixOrder.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Device.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Difference.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Fibre.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_FileExtensions.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Find.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_GappedValueType.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_GetDefaultRng.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_GetValue.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_HasMoveConstructor.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Id.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IntegralForValue.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IosOpenMode.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Is.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsCharType.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsContiguous.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsDevice.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsInteger.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsIntegral.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsLightWeight.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsSameType.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsSequence.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsSimple.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_IsView.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Key.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_LENGTH.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_MagicHeader.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_MakePacked.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_MakeSigned.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_MakeUnsigned.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Member.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Position.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Reference.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_RemoveConst.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_RemovePointer.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_RemoveReference.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_RemoveView.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_SAValue.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Size.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Spec.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_Value.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_VertexDescriptor.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_View.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_metafunction_WEIGHT.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Blosum30.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Blosum45.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Blosum62.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Blosum80.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_CharIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_CharString.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_DPBand.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Dna5Iterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Dna5QString.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Dna5String.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Dna5StringComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Dna5StringReverse.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Dna5StringReverseComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_DnaIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_DnaQString.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_DnaString.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_DnaStringComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_DnaStringReverse.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_DnaStringReverseComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_EditDistanceScoreTypedef.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_IupacIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_IupacString.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_MyersUkkonen.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_MyersUkkonenBanded.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_MyersUkkonenGlobal.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_MyersUkkonenGlobalBanded.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Pam120.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Pam200.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Pam250.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Pam40.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Peptide.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_PeptideIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5Iterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5String.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringReverse.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringReverseComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaString.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverse.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverseComplement.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SelectableAminoAcidMatrix.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SimpleScoreTypedef.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_TraceBack.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_UnicodeString.html -%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Vtml200.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_AggregateTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_AlignmentAlgorithmTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_AlignmentGraphCombinationTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_AlignmentGraphFormatTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_AllocatorUsageTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_ApproximateFinderSearchTypeTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_AssertMacros.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_AtomicPrimitives.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_BamIOContextMemberTag.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_BottomUp.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_CompressedSAFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_ConceptChecking.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_ContainerIteratorTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_DPBandSwitch.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_DeltaTypeTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_DfiIndexFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_DfsOrder.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_DirectionTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_DistanceCalculationTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_EnableIfFunctionality.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_ExceptionHandling.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_FMIndexCompressionSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_FMIndexFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_FMIndexRankDictionarySpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_FileCompressionTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_FileFormats.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_GapDirectionTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_GapsSpecTag.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_GlobalChainingTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_GraphIteratorTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_HmmAlgorithms.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_IndexEsaFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_IndexFindAlgorithm.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_IntervalTreeNodeTypeTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_JoinStrategiesTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_LFTableFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_LocalChainingTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_LogicMetaprogramming.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_LogicalValuesTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_MetafunctionSwitch.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_MetaprogrammingMath.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_MultipleSequenceAlignmentTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_OpenAdressingTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_OverflowStrategyTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_PairwiseLocalAlignmentAlgorithms.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_ParallelismTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_PizzaChiliIndexFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_PizzaChiliIndexTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_PositionCalculation.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_PrefixOrderTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_QGramIndexFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_RankDictionaryFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_RankSupportBitStringFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_RightArrayBinaryTreeFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_SeedExtensionTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_SegmentMatchGenerationTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_SentinelRankDictionaryFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_SortAlignedReadTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_SparseStringFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_StandardIntegers.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_StreamFormats.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_TestSystemMacros.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_TopDown.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_UpgmaConfiguratorTags.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_WOTDIndexFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/group_WaveletTreeFibres.html -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_class.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_concept.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_enum.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_function.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_group.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_macro.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_metafunction.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_page.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_tag.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_typedef.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/icon_variable.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/list-small.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/list.pdf -%%PORTDOCS%%%%DOCSDIR%%/html/img/list.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/seqan_logo.highres.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/seqan_logo.png -%%PORTDOCS%%%%DOCSDIR%%/html/img/seqan_strands.svg -%%PORTDOCS%%%%DOCSDIR%%/html/img/strands.png -%%PORTDOCS%%%%DOCSDIR%%/html/include/seqan/index/shape_predefined.h -%%PORTDOCS%%%%DOCSDIR%%/html/index.html -%%PORTDOCS%%%%DOCSDIR%%/html/js/app.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/autocomplete.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/common.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/full_list.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/jquery.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/jquery.smooth-scroll.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/lang_entities.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/less.min.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/link.data.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/module_tree.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/rubydoc_custom.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/search.data.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/search.data.module.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/search.engine.js -%%PORTDOCS%%%%DOCSDIR%%/html/js/version.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/3L.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/CHANGELOG.md -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/LICENCES.md -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/animations/animation1.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/animations/animation2.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/animations/animation3.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/animations/animation4.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/animations/animation5.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/less.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/README.md -%%PORTDOCS%%%%DOCSDIR%%/html/lib/ZeroClipboard/ZeroClipboard.min.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/ZeroClipboard/ZeroClipboard.swf -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/README.md -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/bootstrap-3.0.0.min.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/bootstrap-multiselect.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/prettify.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/custom.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.eot -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.svg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.ttf -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.woff -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/index.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/bootstrap-3.0.0.min.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/bootstrap-multiselect.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/jquery-2.0.3.min.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/knockout-2.3.0.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/prettify.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/knockout-examples.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/less/bootstrap-multiselect.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/tests.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/css/bootstrap-treeview.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/js/bootstrap-treeview.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/css/bootstrap.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/css/bootstrap.min.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.eot -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.svg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.ttf -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.woff -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/js/bootstrap.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/js/bootstrap.min.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/bower.json -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/css/font-awesome.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/css/font-awesome.min.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/fonts/FontAwesome.otf -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/fonts/fontawesome-webfont.eot -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/fonts/fontawesome-webfont.svg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/fonts/fontawesome-webfont.ttf -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/fonts/fontawesome-webfont.woff -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/bordered-pulled.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/core.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/fixed-width.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/font-awesome.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/icons.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/larger.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/list.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/mixins.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/path.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/rotated-flipped.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/spinning.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/stacked.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/less/variables.less -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_bordered-pulled.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_core.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_fixed-width.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_icons.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_larger.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_list.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_mixins.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_path.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_rotated-flipped.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_spinning.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_stacked.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/_variables.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/scss/font-awesome.scss -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/LICENSE-GPL -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/LICENSE-MIT -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/README.markdown -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/files/jquery-ba-bbq-js.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Events.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Files.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Functions.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/General.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Properties.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/javascript/main.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/javascript/searchdata.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ClassHierarchy.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ConfigFileInfo.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/FileInfo.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ImageFileInfo.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ImageReferenceTable.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/IndexInfo.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/PreviousMenuState.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/PreviousSettings.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/SymbolTable.nd -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Languages.txt -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Menu.txt -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Topics.txt -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/EventsH.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FilesJ.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsA.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsD.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsE.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsF.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsG.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsH.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsN.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsP.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsQ.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsR.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsS.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralA.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralD.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralE.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralF.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralG.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralH.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralJ.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralK.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralL.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralN.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralP.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralQ.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralR.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralS.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/NoResults.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/PropertiesD.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/PropertiesS.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/styles/1.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/styles/2.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/styles/main.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/config.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/deparam/index.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/donate.gif -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/bbq.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/burger.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/burger.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/chicken.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/chicken.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/index.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kebabs.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kebabs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kielbasa.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kielbasa.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/ribs.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/ribs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/steak.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/steak.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/XMLpage.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/bbq.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/burger.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/chicken.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/index.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/kebabs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/kielbasa.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/page.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/pages.xml -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/ribs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/steak.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/bbq.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/burger.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/burger.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/chicken.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/chicken.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/index.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kebabs.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kebabs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kielbasa.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kielbasa.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/ribs.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/ribs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/steak.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/steak.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/bbq.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/burger.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/chicken.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/index.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/kebabs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/kielbasa.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/ribs.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/steak.jpg -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/index.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/index.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/jquery.ba-bbq.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/jquery.ba-bbq.min.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/LGPLv3.txt -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/clipboard.swf -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushAS3.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushBash.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushCSharp.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushCpp.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushCss.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushDelphi.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushDiff.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushGroovy.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushJScript.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushJava.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushJavaFX.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushPerl.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushPhp.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushPlain.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushPowerShell.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushPython.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushRuby.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushScala.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushSql.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushVb.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushXml.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shCore.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shLegacy.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/src/shCore.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/src/shLegacy.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/help.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/magnifier.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/page_white_code.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/page_white_copy.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/printer.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/shCore.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/shThemeDefault.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/shThemeDjango.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/shThemeEmacs.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/shThemeFadeToGrey.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/shThemeMidnight.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/shThemeRDark.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/styles/wrapping.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/test.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/ba-debug.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-1.3.2.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-1.4.1.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-1.4.2.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/cowboy_hat.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_diagonals-medium_18_b81900_40x40.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_diagonals-medium_20_FF7F00_40x40.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_diagonals-small_35_FF7F00_40x40.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_flat_10_000000_40x100.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_highlight-soft_100_FDEBDC_1x100.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_highlight-soft_100_FFD6AF_1x100.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_highlight-soft_100_dddddd_1x100.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_highlight-soft_75_C4884F_1x100.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-bg_inset-soft_100_dddddd_1x100.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-icons_222222_256x240.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-icons_228ef1_256x240.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-icons_333333_256x240.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-icons_913D00_256x240.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-icons_FF7F00_256x240.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-icons_ffd27a_256x240.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/images/ui-icons_ffffff_256x240.png -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/css/benalman/jquery-ui-1.7.2.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/jquery-ui-1.7.2/js/jquery-ui-1.7.2.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/json2.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/json_echo.php -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/qunit.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/unit/ie7-compat.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/unit/index.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/unit/jquery-1.3.2.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/unit/jquery-1.4.1.html -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/unit/qunit.css -%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/unit/unit.js -%%PORTDOCS%%%%DOCSDIR%%/html/lib/styles.less -%%PORTDOCS%%%%DOCSDIR%%/html/list.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95CLANG.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95GCC.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95LINTEL.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95MSVC.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_COMPILER_95WINTEL.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_PLATFORM_95GCC.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95ENABLE_95PARALLELISM.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95HAS_95BZIP2.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95HAS_95ZLIB.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95IS_9532_95BIT.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95IS_9564_95BIT.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95OMP_95PRAGMA.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95PATH_95TO_95ROOT.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_SEQAN_95TEMP_95FILENAME.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_STDLIB_95GNU.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_STDLIB_95LLVM.html -%%PORTDOCS%%%%DOCSDIR%%/html/macro_STDLIB_95VS.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoConstraintIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoIndexCountChildren.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoMaximalRepeats.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoMaximalUniqueMatches.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoMummy.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoSuffixArray.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_DemoSupermaximalRepeats.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_LanguageEntities.html -%%PORTDOCS%%%%DOCSDIR%%/html/page_mainpage.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AbndmAlgoPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AdaptorIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AdjacencyIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AhoCorasickPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AlignColIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AlignmentGraph.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AllocString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AminoAcid.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AnchorGaps.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AnnotationTreeIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ArgParseOption.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ArrayGaps.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ArrayString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AsyncFile.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AutoSeqFormat.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Automaton.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_AverageAccumulator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BadLexicalCast.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BaiBamIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BamFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BamFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BandedLocalAlignmentEnumerator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Bed12Record.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Bed3Record.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Bed4Record.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Bed5Record.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Bed6Record.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BedFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BedFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BfamPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BfsIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BitPackedPair.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BitPackedTuple.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BlastReportFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BlastTabularFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BlastTabularFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BlockString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BndmAlgoPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_BottomUpIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_CStyleString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Caster.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ChainedSeed.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ConcatDirectStringSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ConcatVirtualIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ConcurrentSuspendableQueue.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Counter.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_CountingIdManager.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_D2AFScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_D2StarAFScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_D2zAFScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_DPSearchPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_DeltaMapIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_DependentStringSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_DfsPreorderIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_DirectedGraph.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Dna.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Dna5.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Dna5Q.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_DnaQ.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Echoer.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_EdgeIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_EditDistanceScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_EditEnvironment.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_EmptyFieldError.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Equidistant.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ExactFragment.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ExactReversableFragment.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ExternalString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_FMIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Filter.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Finite.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_FixedCyclicShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_FormattedFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_FormattedFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GappedShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GenericCyclicShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GenericShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GenerousDependentStringSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GffFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GffFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GlobalAlign.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_GlobalChain.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_HammingSimplePattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_HammingStringEnumerator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_HardwiredShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_HierarchicalPexPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_HmmGraph.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_HorspoolPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_IndexDfi.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_IndexEsa.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_IndexQGram.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_IndexSa.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_IndexWotd.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_InfixSegment.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_InputStreamIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_IteratorProxy.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Iupac.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Joiner.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_JournaledSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_JournaledString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_LevenshteinStringEnumerator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MMapString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MapperConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MapperConfigSize.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MapperSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MatrixScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MaxRepeatsIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModCyclicShapeModifiedIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModCyclicShapeModifiedString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModPaddingIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModPaddingString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModReverseIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModReverseString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModViewModifiedIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ModViewModifiedString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MultiBfamPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MultiMemsIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MultiPoolAllocator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MultipleShiftAndPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MumsIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MyersPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_N2AFScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Namer.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_NonHierarchicalPexPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OneGappedShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OpenAddressingQGramIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OracleBfamPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OracleMultiBfamPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OutEdgeIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OutputStreamIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OwnerStringSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PackedPair.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PackedString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PackedTriple.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ParseError.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PexPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PigeonholeFinder.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PigeonholePattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PizzaChiliIndex.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PizzaChiliString.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PoolConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PoolConfigSize.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PoolSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PositionIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PrefixSegment.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_PriorityHeap.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ProfileSeqFracScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ProfileSeqScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ReducedAminoAcid.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ResizableContainerView.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RightArrayBinaryTreeIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Rna.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Rna5.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Sampler.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ScoreSimdWrapper.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SeqFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SeqFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SetHorspoolPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ShiftAndPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ShiftOrPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Shifter.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimpleAllocator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimpleHolder.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimpleIntervalsFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimpleIntervalsFileInOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimplePattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimpleScore.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimpleSeed.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SimpleShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SinglePoolAllocator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Skiplist.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SorterConfig.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SorterConfigSize.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SorterSpec.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Source.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_StdAdaptorIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_StoreIntervalsIntervalTreeNode.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_StorePointsOnlyIntervalTreeNode.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_StreamIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SuffixSegment.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SuperMaxRepeatsFastIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SuperMaxRepeatsIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SwiftFinder.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SwiftLocalFinder.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SwiftLocalPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SwiftPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SwiftSemiGlobalFinder.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SwiftSemiGlobalPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_SyncFile.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TightDependentStringSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TopDownHistoryIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TopDownIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Tree.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TrieBfamPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TristateHolder.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Tupler.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TwoLevelRankDictionary.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UcscFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UcscFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UnbandedLocalAlignmentEnumerator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UndirectedGraph.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UnexpectedEnd.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UngappedShape.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VSTreeIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VcfFileIn.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VcfFileOut.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VectorSet.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VertexIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WaveletTree.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WildShiftAndPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WordGraph.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WuManberPattern.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ZipContainerView.html -%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ZipIterator.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_Default.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_DotDrawing.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_EditDistance.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_GeneticCode.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_HammingDistance.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_LevenshteinDistance.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_Move.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_Murphy10.html -%%PORTDOCS%%%%DOCSDIR%%/html/tag_Nothing.html -%%PORTDOCS%%%%DOCSDIR%%/html/variable_BAM_95FLAG_95SUPPLEMENTARY_32_61_320x0800.html -%%PORTDOCS%%%%DOCSDIR%%/html/variable_LibraryStoreElementstd.html |