diff options
Diffstat (limited to 'science')
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/mmtk/Makefile | 44 | ||||
| -rw-r--r-- | science/mmtk/distinfo | 1 | ||||
| -rw-r--r-- | science/mmtk/pkg-comment | 1 | ||||
| -rw-r--r-- | science/mmtk/pkg-descr | 11 | ||||
| -rw-r--r-- | science/mmtk/pkg-plist | 989 |
6 files changed, 1047 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index 1a58fd0e0f8e..0c155f86aca2 100644 --- a/science/Makefile +++ b/science/Makefile @@ -9,6 +9,7 @@ SUBDIR += glens SUBDIR += libsvm SUBDIR += mayavi + SUBDIR += mmtk SUBDIR += mpqc SUBDIR += mpqc-mpich SUBDIR += oases diff --git a/science/mmtk/Makefile b/science/mmtk/Makefile new file mode 100644 index 000000000000..c10a8268d915 --- /dev/null +++ b/science/mmtk/Makefile @@ -0,0 +1,44 @@ +# New ports collection makefile for: mmtk +# Date created: 29 August 2002 +# Whom: Glenn Johnson <gjohnson@srrc.ars.usda.gov> +# +# $FreeBSD$ +# + +PORTNAME= mmtk +PORTVERSION= 2.2 +CATEGORIES= science python +MASTER_SITES= http://starship.python.net/crew/hinsen/MMTK/ +DISTNAME= MMTK-${PORTVERSION} + +MAINTAINER= gjohnson@srrc.ars.usda.gov + +BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/Scientific:${PORTSDIR}/math/py-scientific +RUN_DEPENDS= ${PYTHON_SITELIBDIR}/Scientific:${PORTSDIR}/math/py-scientific + +USE_REINPLACE= yes +USE_PYTHON= yes +USE_PYDISTUTILS=yes + +.include <bsd.port.pre.mk> + +MAJOR!= ${UNAME} -r | ${SED} -e 's/\..*//' + +PLIST_SUB+= MAJOR=${MAJOR} + +post-patch: + @${REINPLACE_CMD} "s#'Include'#'Include','${PREFIX}/include'#" ${WRKSRC}/setup.py + @${REINPLACE_CMD} "s#malloc.h#stdlib.h#g" ${WRKSRC}/Include/MMTK/readdcd.h + +.if !defined(NOPORTDOCS) +post-install: + @${MKDIR} ${DOCSDIR} + @${INSTALL_DATA} ${WRKSRC}/LICENSE ${DOCSDIR} + @${MKDIR} ${EXAMPLESDIR} + @${TAR} -C ${WRKSRC} -chf - Doc | \ + ${TAR} -xf - -C ${DOCSDIR} + @${TAR} -C ${WRKSRC} -chf - Examples | \ + ${TAR} -xf - -C ${EXAMPLESDIR} +.endif + +.include <bsd.port.post.mk> diff --git a/science/mmtk/distinfo b/science/mmtk/distinfo new file mode 100644 index 000000000000..c835c1f1b25a --- /dev/null +++ b/science/mmtk/distinfo @@ -0,0 +1 @@ +MD5 (MMTK-2.2.tar.gz) = 369df2f12b712cbaf990640a2aa9fac5 diff --git a/science/mmtk/pkg-comment b/science/mmtk/pkg-comment new file mode 100644 index 000000000000..7ebc3c98626e --- /dev/null +++ b/science/mmtk/pkg-comment @@ -0,0 +1 @@ +An Open Source program library for molecular simulation applications diff --git a/science/mmtk/pkg-descr b/science/mmtk/pkg-descr new file mode 100644 index 000000000000..909b5514dcfa --- /dev/null +++ b/science/mmtk/pkg-descr @@ -0,0 +1,11 @@ +This is a port of MMTK (Molecular Modeling ToolKit). In addition to +providing ready-to-use implementations of standard algorithms, MMTK +serves as a code basis that can be easily extended and modified to deal +with standard and non-standard problems in molecular simulations. + +MMTK consists of nothing more than a collection of Python modules, most +of which written in Python itself, with only a small time-critical part +(e.g. energy evaluation) written in C. MMTK applications are Python +programs that make use of these modules. + +WWW: http://starship.python.net/crew/hinsen/MMTK/index.html diff --git a/science/mmtk/pkg-plist b/science/mmtk/pkg-plist new file mode 100644 index 000000000000..d78c51696e72 --- /dev/null +++ b/science/mmtk/pkg-plist @@ -0,0 +1,989 @@ +bin/tviewer +%%PYTHON_SITELIBDIR%%/MMTK/AtomEnvironment.py +%%PYTHON_SITELIBDIR%%/MMTK/AtomEnvironment.pyc +%%PYTHON_SITELIBDIR%%/MMTK/AtomEnvironment.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Biopolymers.py +%%PYTHON_SITELIBDIR%%/MMTK/Biopolymers.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Biopolymers.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Bonds.py +%%PYTHON_SITELIBDIR%%/MMTK/Bonds.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Bonds.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ChargeFit.py +%%PYTHON_SITELIBDIR%%/MMTK/ChargeFit.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ChargeFit.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ChemicalObjects.py +%%PYTHON_SITELIBDIR%%/MMTK/ChemicalObjects.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ChemicalObjects.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Collection.py +%%PYTHON_SITELIBDIR%%/MMTK/Collection.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Collection.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ComplexEnvironment.py +%%PYTHON_SITELIBDIR%%/MMTK/ComplexEnvironment.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ComplexEnvironment.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ConfigIO.py +%%PYTHON_SITELIBDIR%%/MMTK/ConfigIO.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ConfigIO.pyo +%%PYTHON_SITELIBDIR%%/MMTK/CrystalEnvironment.py +%%PYTHON_SITELIBDIR%%/MMTK/CrystalEnvironment.pyc +%%PYTHON_SITELIBDIR%%/MMTK/CrystalEnvironment.pyo +%%PYTHON_SITELIBDIR%%/MMTK/DCD.py +%%PYTHON_SITELIBDIR%%/MMTK/DCD.pyc +%%PYTHON_SITELIBDIR%%/MMTK/DCD.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/al +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/alanine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/ar +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/arginine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/asparagine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/aspartic_acid +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/c +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/ca +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/ch +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/ch2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/ch3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/cl +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/cysteine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/cystine_ss +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/d +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/f +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/fe +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/glutamic_acid +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/glutamine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/glycine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/h +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/histidine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/histidine_deltah +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/histidine_epsilonh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/histidine_plus +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/isoleucine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/k +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/leucine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/lp +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/lysine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/methionine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/n +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/nh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/nh2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/nh3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/o +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/oh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/p +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/phenylalanine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/proline +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/s +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/serine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/sh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/si +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/threonine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/tryptophan +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/tyrosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/valine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms/zn +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ace_beginning_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/adenine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ala_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ala_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ala_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ala_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ala_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/alanine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/amide +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/amide_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/amide_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arg_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arg_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arg_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arg_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arg_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/arginine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asn_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asn_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asn_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asn_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asn_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asp_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asp_sidechain_neutral +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asp_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asp_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asp_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asp_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/asparagine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_neutral +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/aspartic_acid_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/bound_heme +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cym_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cys_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cys_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cys_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cys_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cys_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cysteine_with_negative_charge +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cystine_ss_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cytosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cyx_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cyx_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cyx_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cyx_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/cyx_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-adenosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-adenosine_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-adenosine_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-adenosine_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-cytosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-cytosine_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-cytosine_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-cytosine_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-guanosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-guanosine_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-guanosine_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-guanosine_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-thymine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-thymine_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-thymine_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/d-thymine_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/desoxyribose +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/desoxyribose_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/desoxyribose_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/desoxyribose_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gln_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gln_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gln_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gln_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gln_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain_neutral +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_neutral +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/guanine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_neutral +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_neutral +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methyl +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/na_phosphate +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/nmethyl_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_proline_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phe_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phe_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phe_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phe_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phe_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/phenylalanine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/pro_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/pro_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/pro_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/pro_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/pro_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/proline_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-adenosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-adenosine_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-adenosine_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-adenosine_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-cytosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-cytosine_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-cytosine_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-cytosine_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-guanosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-guanosine_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-guanosine_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-guanosine_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-uracil +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-uracil_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-uracil_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/r-uracil_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ribose +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ribose_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ribose_5ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ribose_5ter_3ter +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ser_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ser_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ser_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ser_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ser_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/serine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/sodium +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/thr_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/thr_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/thr_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/thr_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/thr_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/threonine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/thymine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/trp_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/trp_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/trp_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/trp_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/trp_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tryptophan_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyr_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyr_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyr_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyr_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyr_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/tyrosine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/uracil +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/val_sidechain +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/val_sidechain_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/val_sidechain_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/val_sidechain_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/val_sidechain_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_ct +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_ct_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_ct_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_ct_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_ct_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_nt +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_nt_noh +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_nt_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_nt_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_nt_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_uni +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_uni2 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/valine_uni3 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Molecules/heme +%%PYTHON_SITELIBDIR%%/MMTK/Database/Molecules/water +%%PYTHON_SITELIBDIR%%/MMTK/Database/PDB/110d.pdb +%%PYTHON_SITELIBDIR%%/MMTK/Database/PDB/2YCC.pdb +%%PYTHON_SITELIBDIR%%/MMTK/Database/PDB/bALA1.pdb +%%PYTHON_SITELIBDIR%%/MMTK/Database/PDB/insulin.pdb +%%PYTHON_SITELIBDIR%%/MMTK/Database/Proteins/bala1 +%%PYTHON_SITELIBDIR%%/MMTK/Database/Proteins/cytochrome-c +%%PYTHON_SITELIBDIR%%/MMTK/Database/Proteins/insulin +%%PYTHON_SITELIBDIR%%/MMTK/Database/Proteins/insulin_calpha +%%PYTHON_SITELIBDIR%%/MMTK/Database.py +%%PYTHON_SITELIBDIR%%/MMTK/Database.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Database.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Deformation.py +%%PYTHON_SITELIBDIR%%/MMTK/Deformation.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Deformation.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Dynamics.py +%%PYTHON_SITELIBDIR%%/MMTK/Dynamics.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Dynamics.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Environment.py +%%PYTHON_SITELIBDIR%%/MMTK/Environment.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Environment.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Features.py +%%PYTHON_SITELIBDIR%%/MMTK/Features.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Features.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Field.py +%%PYTHON_SITELIBDIR%%/MMTK/Field.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Field.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/AmberData.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/AmberData.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/AmberData.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/AmberForceField.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/AmberForceField.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/AmberForceField.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/__init__.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/__init__.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/__init__.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/amber_parm91 +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/amber_parm94 +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/amber_parm94.heme +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber/opls_parm +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/BondFF.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/BondFF.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/BondFF.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/BondedInteractions.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/BondedInteractions.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/BondedInteractions.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/CalphaFF.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/CalphaFF.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/CalphaFF.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/DeformationFF.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/DeformationFF.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/DeformationFF.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/ForceField.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/ForceField.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/ForceField.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/ForceFieldTest.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/ForceFieldTest.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/ForceFieldTest.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/LennardJonesFF.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/LennardJonesFF.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/LennardJonesFF.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/MMForceField.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/MMForceField.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/MMForceField.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/NonBondedInteractions.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/NonBondedInteractions.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/NonBondedInteractions.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Restraints.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Restraints.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Restraints.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/SPCEFF.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/SPCEFF.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/SPCEFF.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/__init__.py +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/__init__.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/__init__.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ForceFields/force_fields +%%PYTHON_SITELIBDIR%%/MMTK/FourierBasis.py +%%PYTHON_SITELIBDIR%%/MMTK/FourierBasis.pyc +%%PYTHON_SITELIBDIR%%/MMTK/FourierBasis.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Geometry.py +%%PYTHON_SITELIBDIR%%/MMTK/Geometry.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Geometry.pyo +%%PYTHON_SITELIBDIR%%/MMTK/GroupEnvironment.py +%%PYTHON_SITELIBDIR%%/MMTK/GroupEnvironment.pyc +%%PYTHON_SITELIBDIR%%/MMTK/GroupEnvironment.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Installation.py +%%PYTHON_SITELIBDIR%%/MMTK/Installation.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Installation.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Minimization.py +%%PYTHON_SITELIBDIR%%/MMTK/Minimization.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Minimization.pyo +%%PYTHON_SITELIBDIR%%/MMTK/MolecularSurface.py +%%PYTHON_SITELIBDIR%%/MMTK/MolecularSurface.pyc +%%PYTHON_SITELIBDIR%%/MMTK/MolecularSurface.pyo +%%PYTHON_SITELIBDIR%%/MMTK/MoleculeEnvironment.py +%%PYTHON_SITELIBDIR%%/MMTK/MoleculeEnvironment.pyc +%%PYTHON_SITELIBDIR%%/MMTK/MoleculeEnvironment.pyo +%%PYTHON_SITELIBDIR%%/MMTK/NewModuleNames.py +%%PYTHON_SITELIBDIR%%/MMTK/NewModuleNames.pyc +%%PYTHON_SITELIBDIR%%/MMTK/NewModuleNames.pyo +%%PYTHON_SITELIBDIR%%/MMTK/NormalModes.py +%%PYTHON_SITELIBDIR%%/MMTK/NormalModes.pyc +%%PYTHON_SITELIBDIR%%/MMTK/NormalModes.pyo +%%PYTHON_SITELIBDIR%%/MMTK/NucleicAcids.py +%%PYTHON_SITELIBDIR%%/MMTK/NucleicAcids.pyc +%%PYTHON_SITELIBDIR%%/MMTK/NucleicAcids.pyo +%%PYTHON_SITELIBDIR%%/MMTK/PDB.py +%%PYTHON_SITELIBDIR%%/MMTK/PDB.pyc +%%PYTHON_SITELIBDIR%%/MMTK/PDB.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ParticleProperties.py +%%PYTHON_SITELIBDIR%%/MMTK/ParticleProperties.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ParticleProperties.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ProteinEnvironment.py +%%PYTHON_SITELIBDIR%%/MMTK/ProteinEnvironment.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ProteinEnvironment.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Proteins.py +%%PYTHON_SITELIBDIR%%/MMTK/Proteins.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Proteins.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Random.py +%%PYTHON_SITELIBDIR%%/MMTK/Random.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Random.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Skeleton.py +%%PYTHON_SITELIBDIR%%/MMTK/Skeleton.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Skeleton.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Solvation.py +%%PYTHON_SITELIBDIR%%/MMTK/Solvation.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Solvation.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Subspace.py +%%PYTHON_SITELIBDIR%%/MMTK/Subspace.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Subspace.pyo +%%PYTHON_SITELIBDIR%%/MMTK/ThreadManager.py +%%PYTHON_SITELIBDIR%%/MMTK/ThreadManager.pyc +%%PYTHON_SITELIBDIR%%/MMTK/ThreadManager.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tk/ProteinVisualization.py +%%PYTHON_SITELIBDIR%%/MMTK/Tk/ProteinVisualization.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tk/ProteinVisualization.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tk/__init__.py +%%PYTHON_SITELIBDIR%%/MMTK/Tk/__init__.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tk/__init__.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/README +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/Tkwindow.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/Tkwindow.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/Tkwindow.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryInspector.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryInspector.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryInspector.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryManager.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryManager.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryManager.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryServer.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryServer.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryServer.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryViewer.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryViewer.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/TrajectoryViewer.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/__init__.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/__init__.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/__init__.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/manager.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/manager.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/manager.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/test.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/test.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/test.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Tools/__init__.py +%%PYTHON_SITELIBDIR%%/MMTK/Tools/__init__.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Tools/__init__.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Trajectory.py +%%PYTHON_SITELIBDIR%%/MMTK/Trajectory.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Trajectory.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Units.py +%%PYTHON_SITELIBDIR%%/MMTK/Units.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Units.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Universe.py +%%PYTHON_SITELIBDIR%%/MMTK/Universe.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Universe.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Utility.py +%%PYTHON_SITELIBDIR%%/MMTK/Utility.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Utility.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Visualization.py +%%PYTHON_SITELIBDIR%%/MMTK/Visualization.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Visualization.pyo +%%PYTHON_SITELIBDIR%%/MMTK/Visualization_win32.py +%%PYTHON_SITELIBDIR%%/MMTK/Visualization_win32.pyc +%%PYTHON_SITELIBDIR%%/MMTK/Visualization_win32.pyo +%%PYTHON_SITELIBDIR%%/MMTK/__init__.py +%%PYTHON_SITELIBDIR%%/MMTK/__init__.pyc +%%PYTHON_SITELIBDIR%%/MMTK/__init__.pyo +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_DCD.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_deformation.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_dynamics.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_forcefield.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_minimization.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_surface.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_trajectory.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_universe.so +%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/lapack_mmtk.so +%%PYTHON_SITELIBDIR%%/MMTK/surfm.py +%%PYTHON_SITELIBDIR%%/MMTK/surfm.pyc +%%PYTHON_SITELIBDIR%%/MMTK/surfm.pyo +%%PYTHON_SITELIBDIR%%/MMTK/tess.py +%%PYTHON_SITELIBDIR%%/MMTK/tess.pyc +%%PYTHON_SITELIBDIR%%/MMTK/tess.pyo +%%PORTDOCS%%share/doc/mmtk/Doc/CHANGELOG +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_1.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_10.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_11.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_12.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_13.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_14.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_15.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_16.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_17.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_18.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_19.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_20.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_21.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_22.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_23.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_24.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_25.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_26.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_27.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_28.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_29.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_3.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_30.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_31.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_32.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_33.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_34.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_35.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_36.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_37.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_38.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_39.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_4.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_40.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_41.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_42.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_43.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_44.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_5.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_6.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_7.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_8.html +%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_9.html +%%PORTDOCS%%share/doc/mmtk/Doc/PDF/manual.pdf +%%PORTDOCS%%share/doc/mmtk/Doc/XML/mmtk-user.xml +%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/DocBook.py +%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/DocBook2HTML.py +%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/DocBook2LaTeX.py +%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/README +%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/esis_builder.py +%%PORTDOCS%%share/doc/mmtk/LICENSE +%%PORTDOCS%%share/examples/mmtk/Examples/DNA/construction.py +%%PORTDOCS%%share/examples/mmtk/Examples/DNA/dna_construction.py +%%PORTDOCS%%share/examples/mmtk/Examples/LangevinDynamics/LangevinDynamics.py +%%PORTDOCS%%share/examples/mmtk/Examples/LangevinDynamics/compile.py +%%PORTDOCS%%share/examples/mmtk/Examples/LangevinDynamics/example.py +%%PORTDOCS%%share/examples/mmtk/Examples/MPI/md.py +%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/charge_fit.py +%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/construct_from_pdb.py +%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/lattice.py +%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/vector_field.py +%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/argon.py +%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/protein.py +%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/restart.py +%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/solvation.py +%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/solvent.py +%%PORTDOCS%%share/examples/mmtk/Examples/MonteCarlo/backbone.py +%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/constrained_modes.py +%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/deformation_modes.py +%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/harmonic_force_field.py +%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/modes.py +%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/analysis.py +%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/construction.py +%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/protein_analysis.py +%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/protein_construction.py +%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/calpha_trajectory.py +%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/dcd_export.py +%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/dcd_import.py +%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/snapshot.py +%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/trajectory_average.py +%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/trajectory_extraction.py +%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/view_trajectory.py +%%PORTDOCS%%share/examples/mmtk/Examples/Visualization/additional_objects.py +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Complexes +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Groups +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Molecules +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/PDB +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Proteins +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/ForceFields +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Tk +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Tools +@dirrm %%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%% +@dirrm %%PYTHON_SITELIBDIR%%/MMTK +%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/HTML +%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/PDF +%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/XML +%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/XMLConversion +%%PORTDOCS%%@dirrm share/doc/mmtk/Doc +%%PORTDOCS%%@dirrm share/doc/mmtk +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/DNA +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/LangevinDynamics +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/MPI +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Miscellaneous +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/MolecularDynamics +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/MonteCarlo +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/NormalModes +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Proteins +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Trajectories +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Visualization +%%PORTDOCS%%@dirrm share/examples/mmtk/Examples +%%PORTDOCS%%@dirrm share/examples/mmtk |