| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | New port: biology/bcftools | pi | 2015-06-06 | 1 | -0/+1 |
| * | Remove expired ports: | rene | 2015-01-01 | 1 | -1/+0 |
| * | Rename biology/ncbi-blast to biology/ncbi-blast+ | grembo | 2014-12-31 | 1 | -1/+1 |
| * | Samtools implements various utilities for post-processing alignments in the | pawel | 2014-12-16 | 1 | -0/+1 |
| * | HTSlib is an implementation of a unified C library for accessing common file | pawel | 2014-12-15 | 1 | -0/+1 |
| * | Add new port biology/ncbi-blast | marino | 2014-10-07 | 1 | -0/+1 |
| * | Second run at cleaning out non staged ports without pending PR | bapt | 2014-09-02 | 1 | -1/+0 |
| * | Remove non staged ports without pending PR from b* | bapt | 2014-09-01 | 1 | -3/+0 |
| * | Remove expired ports: | rene | 2014-04-18 | 1 | -2/+0 |
| * | Remove expired ports: | rene | 2014-04-13 | 1 | -2/+0 |
| * | biology/seqtools: Tools for visualising sequence alignments | wg | 2013-11-10 | 1 | -1/+1 |
| * | - Disconnect ports removed in r325546 | bdrewery | 2013-08-29 | 1 | -1/+0 |
| * | KDE3 and QT3 expired on 2013-07-01, remove these ports. | rene | 2013-07-27 | 1 | -1/+0 |
| * | Add Unipro UGENE, a free open-source crowss-platform bioinformatics software. | danfe | 2013-02-23 | 1 | -0/+1 |
| * | 2012-11-26 benchmarks/gsbench: No more public distfiles | bapt | 2012-11-28 | 1 | -1/+0 |
| * | 2012-10-20 chinese/wangttf: No more public distfiles | bapt | 2012-10-26 | 1 | -1/+0 |
| * | Add new ports biology/plink [1] and biology/plinkseq [2]: | makc | 2012-09-27 | 1 | -0/+2 |
| * | SeqAn is an open source C++ library of efficient algorithms | amdmi3 | 2012-06-07 | 1 | -0/+1 |
| * | Bye bye abandonwares (part 2) | bapt | 2011-08-01 | 1 | -5/+0 |
| * | Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files. | wen | 2011-04-22 | 1 | -0/+1 |
| * | p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML | wen | 2010-03-01 | 1 | -0/+1 |
| * | python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees) | wen | 2009-12-29 | 1 | -0/+1 |
| * | pyfasta is a python module for fast, memory-efficient, pythonic | wen | 2009-11-18 | 1 | -0/+1 |
| * | Velvet is a de novo genomic assembler specially designed for short read | amdmi3 | 2009-11-07 | 1 | -0/+1 |
| * | Bio::SCF module allows you to read and update (in a restricted | miwi | 2009-08-29 | 1 | -0/+1 |
| * | Io_lib is a library of file reading and writing code to provide a | miwi | 2009-08-29 | 1 | -0/+1 |
| * | Bio::NEXUS package provides an object-oriented, Perl-based | miwi | 2009-08-23 | 1 | -0/+1 |
| * | PhyML is a software that estimates maximum likelihood phylogenies from | amdmi3 | 2009-07-21 | 1 | -0/+1 |
| * | p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This | miwi | 2009-07-01 | 1 | -0/+1 |
| * | PyCogent is a software library for genomic biology. It is a fully integrated | miwi | 2009-06-22 | 1 | -0/+1 |
| * | Add the biology/crux port. | jasone | 2009-06-09 | 1 | -0/+1 |
| * | 2009-05-31 biology/p5-bioperl-devel: no longer under development | miwi | 2009-06-06 | 1 | -2/+0 |
| * | LibSBML is an open-source programming library to help you read, write, | miwi | 2009-05-29 | 1 | -0/+1 |
| * | Bio::Glite is an interface to G-language Genome Analysis Environment | miwi | 2009-04-03 | 1 | -0/+1 |
| * | p5-Bio-Graphics is a simple GD-based renderer (diagram drawer) | miwi | 2009-03-11 | 1 | -0/+1 |
| * | - Delete biology/nab port after being marked DEPRECATED for three months | pav | 2008-07-24 | 1 | -1/+0 |
| * | SSAHA is a software tool for very fast matching and alignment of DNA | lippe | 2008-06-21 | 1 | -0/+1 |
| * | New port: biology/consed viewing and editing workbench for sequence | edwin | 2008-05-24 | 1 | -0/+1 |
| * | New port: biology/consed viewing and editing workbench for sequence | edwin | 2008-05-24 | 1 | -0/+1 |
| * | New port: biology/consed viewing and editing workbench for sequence | edwin | 2008-05-24 | 1 | -0/+1 |
| * | New port: biology/consed viewing and editing workbench for sequence | edwin | 2008-05-24 | 1 | -0/+1 |
| * | NJplot is a tree drawing program able to draw any phylogenetic tree expressed | pav | 2008-05-14 | 1 | -0/+1 |
| * | MUSCLE is multiple alignment software for protein and nucleotide sequences. | pav | 2008-05-14 | 1 | -0/+1 |
| * | MAPMAKER/EXP is a linkage analysis package designed to help construct primary | rafan | 2008-04-06 | 1 | -0/+1 |
| * | MrBayes is a program for the Bayesian estimation of phylogeny. | miwi | 2007-12-15 | 1 | -0/+1 |
| * | MUMmer is a modular system for the rapid whole genome alignment of finished | miwi | 2007-12-15 | 1 | -0/+1 |
| * | - Sort category Makefiles | sat | 2007-10-06 | 1 | -2/+2 |
| * | Remove expired leaf port: | vd | 2007-01-25 | 1 | -1/+0 |
| * | The BioCocoa framework provides developers with the opportunity to add | dinoex | 2006-12-30 | 1 | -0/+1 |
| * | Adun is a new extendible molecular simulation program that also | dinoex | 2006-11-10 | 1 | -0/+1 |
| * | Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA | clsung | 2006-09-29 | 1 | -0/+1 |
| * | Folding@Home is a distributed computing project -- people from through out the | pav | 2006-08-29 | 1 | -0/+1 |
| * | SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated | pav | 2006-06-20 | 1 | -0/+1 |
| * | Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl. | aaron | 2006-05-14 | 1 | -0/+1 |
| * | Add protomol 2.0.3, OO, component based, framework for molecular | ehaupt | 2006-05-06 | 1 | -0/+1 |
| * | Bioperl-run contain modules that provides a PERL interface to various | garga | 2006-05-03 | 1 | -0/+1 |
| * | Bioperl-run contain modules that provides a PERL interface to various | garga | 2006-05-03 | 1 | -0/+1 |
| * | Add lagan 1.2, efficient tools for large-scale multiple alignments of | garga | 2006-03-17 | 1 | -0/+1 |
| * | Add mafft 5.734, multiple sequence alignments based on fast Fourier | garga | 2006-03-15 | 1 | -0/+1 |
| * | Add dotter 20021204 # last modified date in FTP server, a viewer for | garga | 2006-03-15 | 1 | -0/+1 |
| * | Add blat 33, a fast tool for local sequence similarity searches. | garga | 2006-03-15 | 1 | -0/+1 |
| * | Add belvu 2.29, a viewer for multiple sequence alignments. | garga | 2006-03-15 | 1 | -0/+1 |
| * | Jalview is a multiple alignment editor written in Java. It is used widely in a | hq | 2006-02-13 | 1 | -0/+1 |
| * | - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid | danfe | 2006-01-20 | 1 | -0/+1 |
| * | - Remove expired ports | pav | 2006-01-15 | 1 | -3/+0 |
| * | - Re-add p5-bioperl-devel, development version of biology/p5-bioperl | barner | 2005-12-03 | 1 | -0/+1 |
| * | Remove expired ports | kris | 2005-11-05 | 1 | -1/+0 |
| * | Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for | ehaupt | 2005-10-16 | 1 | -0/+1 |
| * | Add p5-Bio-Das 1.02, client-side library for Distributed Genome | garga | 2005-09-01 | 1 | -0/+1 |
| * | - biology/act is redundant after biology/artemis update | sem | 2005-03-12 | 1 | -1/+0 |
| * | Add finchtv 1.3.0, a chromatogram trace viewer. | thierry | 2005-03-12 | 1 | -0/+1 |
| * | As previously announced, remove ports that have reached their expiry date, | kris | 2005-02-19 | 1 | -1/+0 |
| * | [new port] biology/embassy | sem | 2004-11-27 | 1 | -0/+1 |
| * | Add blast, a powerful software package for gene and protein identification, | pav | 2004-11-12 | 1 | -0/+1 |
| * | Add ariadne 1.3, programs to compare protein sequences and | krion | 2004-06-22 | 1 | -0/+1 |
| * | Remove category pkg/COMMENT files in favour of a COMMENT variable in the | kris | 2004-04-02 | 1 | -0/+2 |
| * | new port:biology/lsysexp | edwin | 2003-09-03 | 1 | -0/+1 |
| * | As announced on May 6, remove the broken p5-bioperl-devel port. | kris | 2003-08-08 | 1 | -1/+0 |
| * | A new port garlic, free molecular viewer and editor, free molecular | maho | 2003-07-28 | 1 | -0/+1 |
| * | Remove gaussian98 | kris | 2003-02-05 | 1 | -1/+0 |
| * | New Port: biology/act | edwin | 2003-01-16 | 1 | -0/+1 |
| * | add treepuzzle 5.1 | ijliao | 2002-11-20 | 1 | -0/+1 |
| * | Connect distribfold to build after moving it from misc category | lioux | 2002-10-07 | 1 | -0/+1 |
| * | add primer3 0.9 | ijliao | 2002-09-17 | 1 | -0/+1 |
| * | Flip is used to find/translate orfs. | dinoex | 2002-09-10 | 1 | -0/+1 |
| * | "Wise2 is package that is focused on comparing DNA sequences at | dinoex | 2002-09-10 | 1 | -0/+1 |
| * | New port L-Breeder version 1.0: Allows you to display and breed | lioux | 2002-08-21 | 1 | -0/+1 |
| * | Add pymol 0.82, Free and Open-Source molecular modeling system. | perky | 2002-08-13 | 1 | -0/+1 |
| * | add libgenome 0.5.0 | ijliao | 2002-07-30 | 1 | -0/+1 |
| * | add avida 1.6.0 | ijliao | 2002-04-20 | 1 | -0/+1 |
| * | Swiss-PdbViewer is an application that provides a user friendly interface | dinoex | 2002-04-03 | 1 | -0/+1 |
| * | Add crimap 2.4, a tool for the creation of multilocus linkage maps. | wjv | 2002-03-27 | 1 | -0/+1 |
| * | Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection. | wjv | 2002-03-27 | 1 | -0/+1 |
| * | Add t_coffee 1.37, a multiple DNA or protein sequence alignment package. | wjv | 2002-01-25 | 1 | -0/+1 |
| * | Initial import of artemis 4.0 | kevlo | 2001-12-22 | 1 | -0/+1 |
| * | Add gff2ps 0.97b, converts gff-formated genomic data-sets to | petef | 2001-12-19 | 1 | -0/+1 |
| * | Add dna-qc 1993.07.26, a quality control algorithm for DNA | petef | 2001-12-19 | 1 | -0/+1 |
| * | Add ruby-bio (BioRuby), an integrated environment for Bioinformatics | knu | 2001-10-24 | 1 | -0/+1 |
| * | Add nclever 4.0, a character-based version of NCBI's Entrez program. | wjv | 2001-09-26 | 1 | -0/+1 |
| * | Add seqio 1.2.2, a set of C functions which can read/write | wjv | 2001-08-22 | 1 | -0/+1 |
| * | Add treeviewx 0.1.1, a phylogenetic tree viewer. | wjv | 2001-08-17 | 1 | -0/+1 |
| * | Add p5-bioperl-devel 0.9.0, | wjv | 2001-08-14 | 1 | -0/+1 |
| * | Add lamarc 2001.08.06, | wjv | 2001-08-07 | 1 | -0/+1 |
| * | Add recombine 1.40, a program to fit population models across sites. | wjv | 2001-08-06 | 1 | -0/+1 |
| * | Add fluctuate 1.30, a program to fit population models. | wjv | 2001-08-06 | 1 | -0/+1 |
| * | Add coalesce 1.50, a program to fit population models. | wjv | 2001-08-06 | 1 | -0/+1 |
| * | Add migrate 1.2, | wjv | 2001-08-06 | 1 | -0/+1 |
| * | Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogeny | wjv | 2001-07-04 | 1 | -0/+1 |
| * | reimport biology/genpak | ijliao | 2001-02-28 | 1 | -0/+1 |
| * | module name conflict with print/gp, so remove it and I'll reimport it again | ijliao | 2001-02-28 | 1 | -1/+0 |
| * | add gp | ijliao | 2001-02-28 | 1 | -0/+1 |
| * | - New port: biology/fasta3, which comprises the FASTA3 suite of DNA and | jeh | 2001-02-12 | 1 | -0/+1 |
| * | New port: biology/fasta, the FASTA2 suite of DNA and protein sequence | jeh | 2001-02-12 | 1 | -0/+1 |
| * | add gaussian98, an ab-initio molecular orbital calculation program. | sf | 2001-02-11 | 1 | -0/+1 |
| * | New Port: biology/ncbi-toolkit | jeh | 2000-10-29 | 1 | -0/+1 |
| * | Initial import of fastDNAml Version 1.2.2 | jeh | 2000-10-12 | 1 | -0/+1 |
| * | Initial import of biology/biojava | jeh | 2000-10-10 | 1 | -0/+1 |
| * | This is nab (nucleic acid builder), a language for macromolecules | jeh | 2000-10-10 | 1 | -0/+1 |
| * | Add emboss, the European Molecular Biology Open Software Suite | nbm | 2000-08-01 | 1 | -0/+1 |
| * | Add py-biopython, is a collection of Python packages and modules created | nbm | 2000-07-31 | 1 | -0/+1 |
| * | Add BioPerl, a collection of Perl5 mods for bioinformatics/genomics | nbm | 2000-07-28 | 1 | -0/+1 |
| * | Add p5-AcePerl, a perl interface to the ACEDB genome database system | nbm | 2000-07-28 | 1 | -0/+1 |
| * | Add sim4, an implementation of the sim4 algorithm for aligning expressed | nbm | 2000-07-27 | 1 | -0/+1 |
| * | Add xdrawchem 0.82 - a program for drawing molecules | alex | 2000-07-19 | 1 | -0/+1 |
| * | Activating the chemeq, clustalw, paml, and phylip ports. | steve | 2000-07-10 | 1 | -0/+4 |
| * | Added gperiodic and xmolwt | taoka | 1999-09-07 | 1 | -0/+2 |
| * | Change Id->FreeBSD. | obrien | 1999-08-25 | 1 | -1/+1 |
| * | Added deft and ortep3 | taoka | 1999-05-19 | 1 | -1/+3 |
| * | Add platon and molden | taoka | 1999-05-07 | 1 | -1/+3 |
| * | Add mopac and psi88 (Move mopac and psi88 from misc to biology) | taoka | 1999-05-06 | 1 | -1/+3 |
| * | Activate tinker. | jkoshy | 1998-11-17 | 1 | -1/+2 |
| * | Turn on hmmer. | steve | 1998-07-13 | 1 | -1/+2 |
| * | Activate povchem. | vanilla | 1998-03-16 | 1 | -1/+2 |
| * | Activate kinemage | jseger | 1998-01-30 | 1 | -1/+2 |
| * | Activate seaview. | vanilla | 1997-12-22 | 1 | -1/+2 |
| * | Activate babel. | vanilla | 1997-12-22 | 1 | -1/+2 |
| * | Activate rasmol. | vanilla | 1997-12-16 | 1 | -2/+2 |
| * | The new ports category "biology" starts here today. No Darwin | asami | 1997-12-13 | 1 | -0/+6 |
