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* Update the EMBOSS suite (biology/emboss) to version 1.12.0James E. Housley2001-05-073-138/+25
* Updata biology/fasta3 to version 33.t08.d4James E. Housley2001-05-073-8/+8
* Update distfile checksum (PORTREVISION bumped)Jimmy Olgeni2001-04-205-37/+14
* activate IGNOREFILES.FUJISHIMA Satsuki2001-04-141-0/+3
* Ignore checksum. The distfile changes day by day.FUJISHIMA Satsuki2001-04-131-1/+1
* This port require X libraries to build/run.Steve Price2001-04-111-0/+1
* Overhaul QT/KDE support:Will Andrews2001-04-031-2/+1
* update to 3.03Michael Haro2001-04-024-27/+5
* updated port biology/phylip from vers 3.5 to 3.6Michael Haro2001-04-025-94/+110
* - Update MASTER_SITES and WWW: lineKevin Lo2001-03-314-32/+21
* Update to 33.t08.d3.Maxim Sobolev2001-03-223-4/+3
* - Upgrade to version 1.70Kevin Lo2001-03-135-18/+41
* Upgrade to 0.4.Jun Kuriyama2001-03-134-12/+12
* o update to 2.7.2.FUJISHIMA Satsuki2001-03-132-5/+5
* pass maintainership to ports@.FUJISHIMA Satsuki2001-03-131-1/+1
* Update to lastest versionKevin Lo2001-03-122-2/+3
* Update the EMBOSS suite to v1.11.0Neil Blakey-Milner2001-03-123-7/+12
* - A small bugfix lead to a rerelease without a version number change.Neil Blakey-Milner2001-03-122-1/+2
* Update to 0.85.Trevor Johnson2001-03-122-2/+2
* Force -O0 on the Alpha.Trevor Johnson2001-03-121-1/+7
* fix WWW:FUJISHIMA Satsuki2001-03-091-1/+1
* update to 33.t08.d2.FUJISHIMA Satsuki2001-03-082-2/+2
* gd.2, not gd.1Ying-Chieh Liao2001-03-051-1/+1
* Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.Peter Pentchev2001-03-052-3/+3
* Remove do-configure section, use PERL_CONFIGURE now.Vanilla I. Shu2001-03-011-1/+0
* Update to version 1.10.1Kevin Lo2001-02-283-8/+7
* reimport biology/genpakYing-Chieh Liao2001-02-288-0/+164
* module name conflict with print/gp, so remove it and I'll reimport it againYing-Chieh Liao2001-02-288-163/+0
* add gpYing-Chieh Liao2001-02-288-0/+163
* Update to version 1.10.0Kevin Lo2001-02-205-24/+51
* The author (at my request) has gone back to a more FreeBSD-friendlyTrevor Johnson2001-02-202-2/+1
* Update to 0.84.Trevor Johnson2001-02-193-15/+14
* Update to version 2001-02-06James E. Housley2001-02-192-2/+2
* Chase graphics/gd's shlib version bump.Akinori MUSHA2001-02-121-1/+2
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andJames E. Housley2001-02-129-0/+204
* New port: biology/fasta, the FASTA2 suite of DNA and protein sequenceJames E. Housley2001-02-128-0/+151
* add gaussian98, an ab-initio molecular orbital calculation program.FUJISHIMA Satsuki2001-02-1112-0/+822
* Update to 0.84a. Generate the plist.Trevor Johnson2001-02-093-8/+10
* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1Kevin Lo2001-01-2910-77/+118
* update from 3.7 to 3.8Ying-Chieh Liao2001-01-2518-167/+706
* Upgrade to version 1.9.0Kevin Lo2001-01-246-13/+47
* Massive style enforcement - use ^I instead of spaces for variables identation.Maxim Sobolev2001-01-171-2/+2
* Clean up inefficient perl invocations; use multiple REs in the same call.Will Andrews2001-01-081-2/+2
* Update to 1.2.6Kevin Lo2000-12-234-7/+25
* Remove trailing period and package name from the pkg-comment.Dmitry Sivachenko2000-12-191-1/+1
* Update to version 5.79.Steve Price2000-12-113-26/+42
* Update distfiles' checksums after the distfiles have been rerolled yetPeter Pentchev2000-12-042-4/+5
* Distfile tarballs were rerolled without notice due to a minor bug.Peter Pentchev2000-12-011-4/+4
* - Update port biology/emboss from 1.7.0 to 1.8.0James E. Housley2000-11-284-17/+124
* Make nolonger support :U. Fix to compensate for that.James E. Housley2000-11-191-3/+6
* They made changes to the "blast" program.James E. Housley2000-11-152-2/+3
* - This is a fairly extensive rework of this port.James E. Housley2000-11-133-0/+56
* - This is a fairly extensive rework of this port.James E. Housley2000-11-134-5/+150
* Change motif to a normal dependency. REQUIRES_MOTIF is now calledSatoshi Asami2000-11-081-1/+1
* Yes. They did re-roll this version, it is legit.James E. Housley2000-11-032-2/+2
* Updated to new version. That is the pits, the day after it becomesJames E. Housley2000-11-024-4/+3
* Make portlint happy, remove a spaceJames E. Housley2000-11-011-1/+1
* Update to version 1.7.0James E. Housley2000-11-013-2/+11
* File missing in pkg-plistJames E. Housley2000-10-301-0/+1
* New Port: biology/ncbi-toolkitJames E. Housley2000-10-2911-0/+376
* Update biology/sim4 to 2000.10.19James E. Housley2000-10-263-5/+7
* gmake is neededJames E. Housley2000-10-241-0/+1
* Update to version 0.6.2James E. Housley2000-10-133-174/+132
* A file was added to distfile and then repackaged with the same name.James E. Housley2000-10-133-2/+5
* Initial import of fastDNAml Version 1.2.2James E. Housley2000-10-126-0/+93
* Missing " in post-patch targetJames E. Housley2000-10-111-1/+1
* PR 21608 was not processed as intented.James E. Housley2000-10-112-21/+22
* Initial import of biology/biojavaJames E. Housley2000-10-106-0/+661
* - Update to 1.6.0Kevin Lo2000-10-103-363/+372
* - Update biology/p5-AcePerl from 1.62 to 1.67Kevin Lo2000-10-106-61/+88
* Initiail version of nab (4.2)James E. Housley2000-10-1017-0/+666
* This is nab (nucleic acid builder), a language for macromoleculesJames E. Housley2000-10-101-0/+1
* - Fix MASTER_SITES/DISTNAMEJames E. Housley2000-10-103-20/+19
* The last commit changes the ports and therefore need a PORTREVISION bumpJames E. Housley2000-10-102-0/+2
* Support PREFIX properlyJames E. Housley2000-10-102-1/+5
* - Fix MASTER_SITESJames E. Housley2000-10-104-18/+36
* Add do-install target to port's Makefile. Remove patch sectionTrevor Johnson2000-10-092-10/+5
* Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} isSatoshi Asami2000-10-081-1/+1
* Rename ${FILESDIR}/patch-* to ${PATCHDIR}/extra-patch-*.Satoshi Asami2000-10-081-2/+2
* Implement USE_GTK, part 1.Jeremy Lea2000-10-053-38/+26
* - Support CC/CFLAGS/PREFIX properlyJames E. Housley2000-10-036-8/+127
* Correct and sort PLISTs.Jeremy Lea2000-10-032-6/+6
* Change MAINTAINER for my ports.Trevor Johnson2000-10-021-1/+1
* Add USE_XLIBKris Kennaway2000-09-221-0/+1
* respect CXX and CXXFLAGS (Kato Tsuguru)Ade Lovett2000-09-194-20/+39
* Update to 0.90.d03Neil Blakey-Milner2000-09-113-132/+152
* Fix checksumKevin Lo2000-09-091-18/+1
* Don't break package building on Satoshi's cluster. Explicitly dependThomas Gellekum2000-09-081-1/+1
* Upgrade to 1.5.0Neil Blakey-Milner2000-09-084-66/+113
* Update to emboss 1.4.0.Neil Blakey-Milner2000-09-074-52/+83
* Update to version 2000.08.24Kevin Lo2000-09-044-7/+23
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.Maxim Sobolev2000-08-211-1/+0
* Update to emboss 1.1.0, fixing some style bugs too.Neil Blakey-Milner2000-08-135-6/+321
* Upgrade to 0.90.d02.Will Andrews2000-08-062-3/+3
* Fix MASTER_SITESChris D. Faulhaber2000-08-021-1/+1
* Add emboss, the European Molecular Biology Open Software SuiteNeil Blakey-Milner2000-08-016-0/+700
* Add py-biopython, is a collection of Python packages and modules createdNeil Blakey-Milner2000-07-316-0/+166
* Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsNeil Blakey-Milner2000-07-287-0/+259
* Add p5-AcePerl, a perl interface to the ACEDB genome database systemNeil Blakey-Milner2000-07-289-0/+177
* Add sim4, an implementation of the sim4 algorithm for aligning expressedNeil Blakey-Milner2000-07-277-0/+48
* Add xdrawchem 0.82 - a program for drawing moleculesAlexander Langer2000-07-197-0/+65
* Activating the chemeq, clustalw, paml, and phylip ports.Steve Price2000-07-101-0/+4
* Adding phylip version 3.5.Steve Price2000-07-105-0/+161
* Add paml version 3.01.Steve Price2000-07-107-0/+89
* Adding clustalw version 1.81.Steve Price2000-07-106-0/+66
* Adding chemeq version 1.10.Steve Price2000-07-105-0/+62
* - Use GTK_CONFIG/GLIB_CONFIG instead of hardcoded gtk12-config/glib12-configSteve Price2000-07-082-19/+27
* Unbreak by extracting the correct distfileKris Kennaway2000-07-031-8/+2
* ...local-distfiles... -> MASTER_SITE_LOCALAlexander Langer2000-06-201-1/+2
* fc is ftn77 now, adjust accordingly.Alexander Langer2000-06-123-5/+6
* Update to version 1.0.3Alexander Langer2000-06-114-24/+23
* Clean up this port so that it installs stuff in a more proper locationWill Andrews2000-06-093-138/+138
* Update to the latest version as of 5 June.Akinori MUSHA2000-06-084-15/+26
* Fix build for 4.0 and later. Make DESCR shorter.Will Andrews2000-06-085-165/+181
* Update to 3.6.Will Andrews2000-06-086-114/+145
* Convert to usable F77 binary, especially on 4.0 and newer.Will Andrews2000-06-084-82/+73
* Fix MD5 checksum. Since I was unable to find an older version of theWill Andrews2000-06-051-1/+1
* Fix this port after the recent PORT{NAME,VERSION} changes. portlint(1)Steve Price2000-05-281-2/+4
* Update to version 2000.04.26.Steve Price2000-05-283-5/+3
* Chase the checksum (lots of code changes)Kris Kennaway2000-04-241-1/+1
* WRKSRC-related fixes.Satoshi Asami2000-04-161-0/+1
* update with the new PORTNAME/PORTVERSION variablesMichael Haro2000-04-0915-53/+51
* Remove andy@icc.surw.chel.su as maintainer from his ports..he doesn'tKris Kennaway2000-03-291-1/+1
* Add virtual category "linux" to Linux apps and support libs/utils.Satoshi Asami2000-02-281-1/+1
* Chase the checksum (minor source changes)Kris Kennaway2000-02-271-1/+1
* update URLsMichael Haro2000-02-241-2/+2
* update WWWMichael Haro2000-02-241-1/+1
* Forgot to remove this lineChris Piazza2000-02-071-1/+0
* Don't strip things we don't know how to stripChris Piazza2000-01-311-1/+1
* fix some pkg/MESSAGE stuffMichael Haro2000-01-302-2/+2
* Update to ver 1.2.2Chris Piazza2000-01-152-3/+3
* Bump glib12 's share library version to 3,Vanilla I. Shu1999-10-102-10/+2
* f77(1) on the Alpha doesn't grok '-malign-double' so only use it on theSteve Price1999-09-271-0/+4
* Enforce random pkg/COMMENT rules, including the one that states EmacsTim Vanderhoek1999-09-182-2/+2
* Grammar and WWW: fix.Tim Vanderhoek1999-09-181-7/+6
* Update to new version.Steve Price1999-09-183-8/+5
* Compile-errorSatoshi Taoka1999-09-102-3/+9
* Compile errorSatoshi Taoka1999-09-091-1/+1
* Added gperiodic and xmolwtSatoshi Taoka1999-09-071-0/+2
* Displays a periodic table of the elements.Satoshi Taoka1999-09-075-0/+58
* This program calculate formula weight and percent of each elements.Satoshi Taoka1999-09-076-0/+82
* Distfile changed on the MASTER_SITE. I have no idea if thisChris Piazza1999-08-312-6/+6
* Remove preceeding pkgname from some of the comments having one.Tim Vanderhoek1999-08-301-1/+1
* grammar gnitTim Vanderhoek1999-08-301-1/+1
* ln -> ${LN}Michael Haro1999-08-282-2/+2
* echo -> ${ECHO} or ${ECHO_MSG} and in some cases, move echo stuffMichael Haro1999-08-281-8/+8
* Updated to 2.7.1Satoshi Taoka1999-08-253-11/+24
* Change Id->FreeBSD.David E. O'Brien1999-08-2514-14/+14
* Make port depend on linux_base instead of linux_lib.Marcel Moolenaar1999-07-211-3/+3
* Fix typos and/or cleanup WWW:.Tim Vanderhoek1999-07-174-18/+13
* BROKEN='MD5 checksum error'David E. O'Brien1999-07-151-1/+3
* Fix port after distfile change.Chris Piazza1999-07-112-3/+2
* Remove trailing spaces, and any periods that were hidden by them.Tim Vanderhoek1999-06-282-2/+2
* As threatened, enforce the "Capital, no period" rule. Ellipses areTim Vanderhoek1999-06-279-9/+9
* Install into ${PREFIX}, not /usr/local.Chris Piazza1999-06-263-7/+7
* Clean up warnings for -current (g77)Chris Piazza1999-06-251-7/+9
* Change ${INSTALL} to use -s and -c.Chris Piazza1999-06-241-45/+45
* Update tinker from version 3.6 to version 3.7Chris Piazza1999-06-237-310/+289
* Make the psi88 port install into PREFIX instead of a hardcodedChris Piazza1999-06-191-4/+14
* The xforms ports is no longer an i386-only port.Steve Price1999-06-091-4/+1
* Fill in a couple of missing WWW references...Marc G. Fournier1999-06-052-0/+4
* Fix build for -current boxes with egcs' f77 compiler.Steve Price1999-05-242-11/+29
* Allow this port to be built on -current i386 boxes that have egcs' f77Steve Price1999-05-241-2/+11
* This port doesn't build with egcs' f77 compiler.Steve Price1999-05-241-2/+7
* Build this port on an Alpha box instead of trying to use i386 binaries.Steve Price1999-05-241-1/+5
* Fix build for Alpha.Steve Price1999-05-241-1/+1
* Fix build on -current (Alpha) machines.Steve Price1999-05-242-18/+29
* Added WWW: for www-site target in DESCRSatoshi Taoka1999-05-192-2/+2
* Added deft and ortep3Satoshi Taoka1999-05-191-1/+3
* The Oak Ridge Thermal Ellipsoid Plot Program for Crystal StructureSatoshi Taoka1999-05-197-0/+594
* Density functional molecular orbital calculation.Satoshi Taoka1999-05-197-0/+226
* Fix checksumSeiichirou Hiraoka1999-05-091-1/+1
* Changed MASTER_SITESSatoshi Taoka1999-05-081-2/+2
* Changed MASTER_SITESSatoshi Taoka1999-05-081-3/+3
* Add platon and moldenSatoshi Taoka1999-05-071-1/+3
* display molecular orbitals and electron densities in 2D and 3DSatoshi Taoka1999-05-077-0/+201
* the one of crystallographic toolsSatoshi Taoka1999-05-076-0/+175
* Be able to use ${PREFIX}Satoshi Taoka1999-05-075-13/+67
* Fixed ${CATEGORIES} (removed misc from it)Satoshi Taoka1999-05-061-2/+2
* Semi-empirical (MNDO, etc.) molecular orbital calculationSatoshi Taoka1999-05-0611-0/+213
* Plotting wavefunctions (molecular orbitals) in 3DSatoshi Taoka1999-05-069-0/+365
* Add mopac and psi88 (Move mopac and psi88 from misc to biology)Satoshi Taoka1999-05-061-1/+3
* Weasal and Wabbits and BIG FOOT.Tim Vanderhoek1999-05-036-17/+12
* Upgrade to 2.1.1Bill Fenner1999-03-093-8/+16
* Adjust port Makefiles to new EXTRACT_* variable defaults. See log ofSatoshi Asami1999-02-031-1/+3
* Correct the MD5 checksum.Vanilla I. Shu1999-01-311-1/+1
* Added 'ONLY_FOR_ARCHS=i386' to XForms dependent ports.Hidetoshi Shimokawa1999-01-071-1/+4
* Add 'ONLY_FOR_ARCHS=i386' to linux_lib dependent ports.Hidetoshi Shimokawa1999-01-071-1/+3
* Change *_DEPENDS on lang/perl5 to USE_PERL5 so we won't have anySatoshi Asami1999-01-021-3/+2
* Update MASTER_SITES.Bill Fumerola1998-12-102-4/+6
* Add a comment about setting env var 'FC' to 'g77' if EGCS is to beJoseph Koshy1998-11-181-3/+4
* Activate tinker.Joseph Koshy1998-11-171-1/+2
* New port of the Tinker Molecular modelling program.Joseph Koshy1998-11-1711-0/+725
* Use bsd.port.{pre,post}.mk to move PORTOBJFORMAT to front, or changeSatoshi Asami1998-11-141-6/+8
* Update of MASTER_SITES.Bill Fumerola1998-11-131-2/+2
* Unbreak for ELFJustin M. Seger1998-11-031-3/+1
* Master site changed, update MD5.Joseph Koshy1998-10-082-3/+3
* Checksum changed again....Satoshi Asami1998-09-281-1/+1
* Remove empty doc dir on deinstall.Steve Price1998-09-271-0/+1
* Don't strip the binary when building ELF.Steve Price1998-09-271-1/+5
* Checksum of seaview.tar changed.Steve Price1998-09-271-1/+1
* Mark broken for ELF because of xforms port.Steve Price1998-09-271-2/+4
* Take the manpages out of pkg/PLIST and put them in MAN1.Steve Price1998-09-162-2/+3
* Unbreak by making a new checksum and fixing the makefile to find a new sourceJustin M. Seger1998-08-213-6/+4
* BROKEN:Justin M. Seger1998-08-211-1/+3
* Remove manpages from pkg/PLISTDavid E. O'Brien1998-08-141-8/+0
* Fix up dependencies for ports that moved into the x11-toolkits category.Satoshi Asami1998-08-081-2/+2
* Rename all USE_X11 to USE_X_PREFIX. Requires 1.279 (3.0-current) orSatoshi Asami1998-08-051-2/+2
* Making x11 category more useful project part 1: take out "x11" ofSatoshi Asami1998-07-282-4/+4
* Another batch of "Add homepage." for benchmarks through converters.Tim Vanderhoek1998-07-251-0/+2
* Turn on hmmer.Steve Price1998-07-131-1/+2
* Initial import of hmmer version 2.0.Steve Price1998-07-136-0/+86
* Update to 2.6b2.1.Steve Price1998-05-243-7/+7
* mkdir -> ${MKDIR}. This also has the side-effect of making thisSatoshi Asami1998-03-311-2/+2
* Add DIST_SUBDIR, the name "periodic.tab" is kinda generic. Speaking of which,Satoshi Asami1998-03-172-7/+8
* Add linux_lib DEPEND lines.Justin M. Seger1998-03-171-1/+4
* Activate povchem.Vanilla I. Shu1998-03-161-1/+2
* Povchem is a tool to generate POV file from a PDB(ProteinVanilla I. Shu1998-03-167-0/+78
* Activate kinemageJustin M. Seger1998-01-301-1/+2
* Import of ports/biology/kinemage 4.2Justin M. Seger1998-01-305-0/+37
* Typo (LIB_DEPEND -> LIB_DEPENDS).Satoshi Asami1997-12-261-2/+2
* Move pkg/INSTALL to pkg/MESSAGE, add another patch from maintainer.Vanilla I. Shu1997-12-243-6/+14
* Activate seaview.Vanilla I. Shu1997-12-221-1/+2
* Seaview is a multiple DNA sequence alignment editor.Vanilla I. Shu1997-12-226-0/+72
* Activate babel.Vanilla I. Shu1997-12-221-1/+2
* This is a port of a molecular file format converter, babel.Vanilla I. Shu1997-12-227-0/+95
* Activate rasmol.Vanilla I. Shu1997-12-161-2/+2
* rasmol is a biological molecule visualization program.Vanilla I. Shu1997-12-166-0/+46
* The new ports category "biology" starts here today. No DarwinSatoshi Asami1997-12-132-0/+7
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