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* UnbreakAntoine Brodin2014-03-281-1/+1
* - Fix PLISTSunpoet Po-Chuan Hsieh2014-03-262-0/+3
* - Update to 2.0Sunpoet Po-Chuan Hsieh2014-03-262-3/+3
* Does not build with wx 3.0Baptiste Daroussin2014-03-241-3/+3
* Add staging supportPawel Pekala2014-03-241-12/+5
* - Add staging supportPawel Pekala2014-03-241-19/+9
* - Add staging supportPawel Pekala2014-03-242-31/+31
* - Add staging supportPawel Pekala2014-03-241-17/+13
* Add staging supportPawel Pekala2014-03-242-34/+60
* - Add staging supportPawel Pekala2014-03-241-10/+8
* Add staging supportPawel Pekala2014-03-241-15/+8
* Add staging supportPawel Pekala2014-03-241-8/+5
* Deprecate: Broken for more than 6 monthsAntoine Brodin2014-03-191-0/+2
* Support stagingEmanuel Haupt2014-03-141-9/+3
* Support stagingEmanuel Haupt2014-03-141-2/+2
* - Convert USE_GMAKE to USESMartin Wilke2014-03-1310-11/+10
* Deprecate a few old unmaintained portsAntoine Brodin2014-03-121-0/+2
* Update the default version of GCC used in the Ports Collection fromGerald Pfeifer2014-03-1112-10/+12
* biology/ssaha: undeprecate, this port fetches and builds fine.Rene Ladan2014-03-091-3/+0
* Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained s...Antoine Brodin2014-03-092-0/+4
* UnbreakAntoine Brodin2014-03-091-1/+0
* Convert b* to USES=zipBaptiste Daroussin2014-03-075-10/+5
* Convert to dos2unixBaptiste Daroussin2014-03-071-1/+1
* Update to version 1.13.1.Alexey Dokuchaev2014-03-073-4/+4
* biology/fasta3: Checked new distfile and regenerated distinfo to unbreakJohn Marino2014-03-022-3/+8
* - Update to 35Martin Wilke2014-02-274-27/+50
* - Update to 5.0.7Martin Wilke2014-02-272-24/+21
* - Stage supportMartin Wilke2014-02-272-21/+18
* - Repocopy print/py-reportlab to print/py-reportlab1TAKATSU Tomonari2014-02-251-2/+2
* Remove trailing whitespaces from category biologyEmanuel Haupt2014-02-2110-10/+10
* Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most casesTijl Coosemans2014-02-173-15/+13
* Support stagingEmanuel Haupt2014-02-161-2/+1
* Support stagingEmanuel Haupt2014-02-161-14/+7
* - Support stagingEmanuel Haupt2014-02-161-9/+7
* Support stagingEmanuel Haupt2014-02-161-8/+3
* Support stagingEmanuel Haupt2014-02-161-10/+6
* Fix old makeplist bug.Mathieu Arnold2014-02-122-1/+2
* According to the Porter's Handbook (5.12.2.3.) default options must be added toEmanuel Haupt2014-02-1010-0/+20
* - Stage supportMartin Wilke2014-02-102-22/+36
* Update WWWEmanuel Haupt2014-02-091-1/+1
* Deprecate ports unmaintained for which distillator is not able to find public...Baptiste Daroussin2014-02-081-0/+3
* biology/libgenome: Fix build on dragonflyJohn Marino2014-02-061-0/+10
* biology/tRNAscan-SE: Fix hardcoded perl pathJohn Marino2014-02-061-0/+11
* biology/wise: Add dragonfly supportJohn Marino2014-02-061-0/+13
* Drop maintainership on those.Mathieu Arnold2014-02-061-1/+1
* Drop maintainership BOINC ports, old machine running them gave up.Rene Ladan2014-02-051-1/+1
* - Stage supportMartin Wilke2014-01-312-33/+31
* - Stage supportMartin Wilke2014-01-311-1/+0
* - Stage supportMartin Wilke2014-01-311-1/+0
* - Convert to PYDISTUTILS_AUTOPLISTMartin Wilke2014-01-312-25/+3
* - Convert to PYDISTUTILS_AUTOPLISTMartin Wilke2014-01-312-11/+3
* Unbreak the fetch: one of the documentation PDF files was rerolled.Alexey Dokuchaev2014-01-302-4/+2
* - Mark BROKEN because it does not fetchBernhard Froehlich2014-01-301-0/+2
* - fix pkg-plistAndrej Zverev2014-01-302-4/+3
* - Stagify; cleanup Makefile and reorder the knobs a bitAlexey Dokuchaev2014-01-291-28/+21
* - Fix build on -currentMartin Wilke2014-01-266-26/+60
* - Update to 1.9Sunpoet Po-Chuan Hsieh2014-01-233-8/+7
* Fix properties on pkg-plistBaptiste Daroussin2014-01-224-4/+0
* Support stageBaptiste Daroussin2014-01-211-5/+4
* Support stageBaptiste Daroussin2014-01-211-6/+5
* Support stageBaptiste Daroussin2014-01-212-3/+1
* Support stageBaptiste Daroussin2014-01-212-13/+26
* Stage supportAntoine Brodin2014-01-181-15/+7
* - Update to version 1.13.0 and improve FreeBSD support; it also buildsAlexey Dokuchaev2014-01-179-140/+378
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-7/+3
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Support stageBaptiste Daroussin2014-01-161-19/+10
* Python cleanup:Rene Ladan2014-01-143-3/+3
* - Fix build with clangThomas Zander2014-01-132-13/+8
* - add stage supportAndrej Zverev2014-01-062-6/+4
* - add stage supportAndrej Zverev2014-01-063-4/+2
* - support stageAndrej Zverev2014-01-056-135/+143
* Mark as broken: Invalid checksum, seems like the software was rerolledBaptiste Daroussin2014-01-041-0/+2
* Convert biology to MDOCS and MEXAMPLESAdam Weinberger2014-01-0314-20/+46
* - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mkOlli Hauer2013-12-311-1/+1
* Stage supportAntoine Brodin2013-12-311-3/+2
* Stage supportAntoine Brodin2013-12-311-13/+4
* - USES=fortran gmake.Tijl Coosemans2013-12-292-16/+15
* The hmmer binary was renamed upstream to indicate that it is now anRene Ladan2013-12-292-6/+6
* biology/seqtools: update to 4.24William Grzybowski2013-12-252-3/+3
* Several fixes:Rene Ladan2013-12-242-10/+14
* - Fix build with clang/libc++.Wen Heping2013-12-202-3/+12
* - Respect CC/CFLAGSPawel Pekala2013-12-202-6/+43
* - biology/tinker: USES=fortran, staging.Tijl Coosemans2013-12-192-22/+20
* USES=fortran, staging.Tijl Coosemans2013-12-191-9/+5
* USES=fortran, staging, miscellaneous cleanups.Tijl Coosemans2013-12-192-119/+26
* Version 2013.12.12, USES=fortran, staging.Tijl Coosemans2013-12-181-30/+17
* USES=fortran, fix LDFLAGS, staging.Tijl Coosemans2013-12-181-11/+10
* Fix the build with more standards-compliant compilers such as GCC 4.7. [1]Gerald Pfeifer2013-12-134-1/+63
* In preparation for making libtool generate libraries with a sane name, fix allBaptiste Daroussin2013-12-1112-19/+19
* Support stageBaptiste Daroussin2013-12-111-8/+5
* Support stageBaptiste Daroussin2013-12-111-8/+5
* Support stageBaptiste Daroussin2013-12-111-3/+3
* Respect PORT_OPTIONS:MDOCSAdam Weinberger2013-12-092-8/+8
* - Fix build on headWen Heping2013-12-011-0/+1
* - Update to 1.28Philippe Audeoud2013-11-283-62/+60
* - Fix build with clangPhilippe Audeoud2013-11-285-34/+44
* - Fix buildPhilippe Audeoud2013-11-272-10/+42
* biology/lamarc: fix build on currentWilliam Grzybowski2013-11-262-4/+10
* Convert to USES=dos2unixBaptiste Daroussin2013-11-181-6/+5
* biology/seqtools: update to 4.23William Grzybowski2013-11-152-4/+4
* Add stage supportBaptiste Daroussin2013-11-131-18/+8
* Stage supportBaptiste Daroussin2013-11-131-11/+6
* biology/seqtools: Tools for visualising sequence alignmentsWilliam Grzybowski2013-11-108-60/+61
* . give maintainership to the submitter;Boris Samorodov2013-11-071-3/+3
* - Update to 1.8Sunpoet Po-Chuan Hsieh2013-11-032-3/+3
* - Install official UGENE documentation (PDF)Alexey Dokuchaev2013-11-013-3/+21
* - Update to version 1.12.3Alexey Dokuchaev2013-10-318-79/+325
* Update to version 36.3.6dPawel Pekala2013-10-305-93/+114
* Update to libmpc version 1.0.1 which brings the following fixes:Gerald Pfeifer2013-10-2612-5/+12
* - Remove manual creation and removal of share/applications, as it's now in th...Dmitry Marakasov2013-10-223-4/+0
* Deprecated some ports broken for more than 6 monthBaptiste Daroussin2013-10-181-0/+3
* - Switch to build with lang/ruby19Thomas Abthorpe2013-10-111-1/+1
* Update BioCocoa to the latest release.David Chisnall2013-10-093-75/+68
* - Update to 0.5.1Wen Heping2013-10-043-4/+4
* - Update to 1.7Sunpoet Po-Chuan Hsieh2013-10-043-12/+12
* biology/avida: add <unistd.h>, <typoinfo> for modern compilersJohn Marino2013-10-022-0/+20
* - Remove NO_STAGE as these have been tested to be safeBryan Drewery2013-09-252-2/+0
* Use value of BOINC_CLIENT_HOME in pkg-messageRene Ladan2013-09-242-2/+3
* - Add stagedir supportRene Ladan2013-09-241-12/+17
* Respect 'make check-sanity' for this port too.Rene Ladan2013-09-241-2/+1
* Fix NO_STAGE attributionBaptiste Daroussin2013-09-231-1/+1
* Add NO_STAGE all over the place in preparation for the staging support (cat: ...Baptiste Daroussin2013-09-2094-114/+117
* Mark BROKEN, fails checksumBryan Drewery2013-09-181-0/+2
* Add an explicit dependency on pkgconfAntoine Brodin2013-09-081-1/+1
* - Use single space after WWW:Sunpoet Po-Chuan Hsieh2013-09-081-1/+1
* - convert to the new perl5 frameworkAndrej Zverev2013-09-074-4/+7
* - Make ports use the libc provided iconv implementation on 10-CURRENTGuido Falsi2013-09-053-3/+5
* - Add WWWSunpoet Po-Chuan Hsieh2013-08-301-2/+1
* - Disconnect ports removed in r325546Bryan Drewery2013-08-291-1/+0
* Update to latest GNUstep core libraries.David Chisnall2013-08-298-412/+85
* Make sure to respect CC and CXX, this fixes the build on head without gccBaptiste Daroussin2013-08-281-2/+2
* Update math/gsl to 1.16 and adjust some dependent portsBrendan Fabeny2013-08-271-2/+2
* - Update to 2.3.5Wen Heping2013-08-204-442/+9
* biology/tinker: Regenerate distinfo to unbreak fetchJohn Marino2013-08-182-2/+3
* Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.Gerald Pfeifer2013-08-181-1/+1
* - Remove MAKE_JOBS_SAFE variableAlex Kozlov2013-08-1510-10/+0
* biology/libgenome: Mark jobs unsafeJohn Marino2013-08-141-0/+2
* - update libdg to 2.1.0Dirk Meyer2013-08-092-5/+5
* - Pet portlint: remove blank line among *_DEPENDSSunpoet Po-Chuan Hsieh2013-08-061-1/+0
* - Convert to new perl frameworkAndrej Zverev2013-08-062-2/+4
* - Convert to new perl frameworkMathieu Arnold2013-08-032-2/+2
* - Convert to new perl frameworkAndrej Zverev2013-08-032-2/+2
* - Convert to new perl frameworkMathieu Arnold2013-08-038-24/+19
* - Update to 1.6Philippe Audeoud2013-08-012-4/+5
* KDE3 and QT3 expired on 2013-07-01, remove these ports.Rene Ladan2013-07-276-187/+0
* - Update to 3.0Wen Heping2013-07-203-32/+46
* - Update to 0.56Wen Heping2013-07-203-3/+13
* - Update to 2.37Wen Heping2013-07-203-3/+7
* - Update to 36.3.6Wen Heping2013-07-195-23/+30
* - Update to 6.2.06Martin Wilke2013-07-154-13/+23
* - Update to 4.4.2Martin Wilke2013-07-152-3/+3
* - Update to 7.31.0Sunpoet Po-Chuan Hsieh2013-07-121-0/+1
* Convert from USE_MOTIF to USES=motifBaptiste Daroussin2013-07-101-6/+2
* Convert from USE_MOTIF to USES=motifBaptiste Daroussin2013-07-103-7/+4
* Fix some PORT_OPTIONS conversionsAntoine Brodin2013-07-011-1/+1
* Convert to USES=imakeBaptiste Daroussin2013-06-291-10/+4
* Fix some screw ups introduced in r319847.Raphael Kubo da Costa2013-06-252-4/+4
* Remove stale (since r321246) pkg-plist file.Boris Samorodov2013-06-201-39/+0
* . introdice optionsNG to the port;Boris Samorodov2013-06-202-98/+26
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-202-18/+14
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-202-42/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-202-34/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-203-13/+12
* Use optionsNG for DOCS.Boris Samorodov2013-06-201-2/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-202-12/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-202-13/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-201-10/+11
* . add license (GPLv2);Boris Samorodov2013-06-201-8/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-202-12/+12
* . remove pkg-plist (along with the previous commit).Boris Samorodov2013-06-201-17/+0
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-201-4/+14
* . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;Boris Samorodov2013-06-202-20/+8
* . add license (GPLv2);Boris Samorodov2013-06-201-6/+5
* . pet portlint: add USE_LDCONFIG;Boris Samorodov2013-06-191-0/+2
* . trim Makefile headers;Boris Samorodov2013-06-191-6/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-192-5/+8
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-192-11/+8
* Index: MakefileBoris Samorodov2013-06-191-27/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;Boris Samorodov2013-06-193-12/+11
* - Avoid of using SITE_PERLAndrej Zverev2013-06-071-2/+1
* - Update to 3.6.9.5Martin Wilke2013-06-043-19/+33
* - Fix build with clangMartin Wilke2013-06-041-0/+10
* - Trim Makefile headersWen Heping2013-06-013-15/+3
* - Update to 6.2.05Martin Wilke2013-05-292-5/+4
* - Update to 3.5.1Wen Heping2013-05-265-105/+22
* - Update to 6.2.04Martin Wilke2013-05-212-3/+3
* Convert USE_NCURSES by USES=ncursesBaptiste Daroussin2013-05-061-2/+1
* Fix build by adding an explicit dep on pkgconfBaptiste Daroussin2013-05-041-0/+1
* - Update to 1.13.0Frederic Culot2013-04-306-15/+45
* Workaround the way mopac installs executables.Xin LI2013-04-302-1/+4
* - Update to 6.2.02Martin Wilke2013-04-293-3/+4
* Use bsd.port.options.mk instead of bsd.port.{pre|post}.mkRene Ladan2013-04-291-2/+2
* - Convert USE_ICONV=yes to USES=iconvMarcus von Appen2013-04-271-1/+1
* Remove unneeded escapingBryan Drewery2013-04-271-6/+2
* - Update to 5.0.6Martin Wilke2013-04-262-3/+3
* Update MASTERSITES for my server to use httpsGlen Barber2013-04-261-1/+1
* - Convert USE_GETTEXT to USES (part 3)Alex Kozlov2013-04-251-1/+1
* Finish converting the whole ports tree to USES=pkgconfigBaptiste Daroussin2013-04-231-1/+1
* For perl@ owned ports:Eitan Adler2013-03-293-8/+4
* - Update to 4.4.1Martin Wilke2013-03-262-25/+17
* - Mark broken checksum mismatchMartin Wilke2013-03-251-0/+2
* - Update to 6.2.01Martin Wilke2013-03-255-168/+164
* - convert USE_CMAKE to USESMax Brazhnikov2013-03-232-4/+2
* Fix build with protobuf-2.5.0Vanilla I. Shu2013-03-212-0/+34
* - adopt optionsNGJason Helfman2013-03-191-19/+28
* 1: Upgrade protobuf to 2.5.0.Vanilla I. Shu2013-03-181-0/+1
* - adoption of optionsNGJason Helfman2013-03-181-15/+12
* - adoption of optionsNGJason Helfman2013-03-182-130/+129
* - adoption of optionsNGJason Helfman2013-03-181-11/+8
* - adoption of optionsNGJason Helfman2013-03-181-26/+26
* - Update to 2012.06.20Martin Wilke2013-03-146-191/+173
* Convert USE_BISON to USES= bisonBaptiste Daroussin2013-03-081-6/+2
* Remove compatibility with FreeBSD 7.XRene Ladan2013-03-072-14/+2
* Add missing item to pkg-plist reported by QAT but not reported by poudriere.Eitan Adler2013-03-031-0/+1
* Update to 2.33Eitan Adler2013-03-032-3/+3
* - Update to 2.4.1Martin Wilke2013-03-023-124/+45
* Unbreak on 7.X and i386 systems.Alexey Dokuchaev2013-02-254-1/+37
* Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.Alexey Dokuchaev2013-02-236-0/+1218
* - Update to 0.52 [1]Frederic Culot2013-02-163-13/+26
* - remove empty filesRuslan Makhmatkhanov2013-02-151-0/+0
* - Fix build with clangMartin Wilke2013-02-103-24/+26
* - Update to 1.27Philippe Audeoud2013-02-052-3/+3
* - Update to 20121109.Marcelo Araujo2013-02-044-43/+25
* - Strip header at request of original creatorThomas Abthorpe2013-01-271-5/+1
* - Update to 2.32Philippe Audeoud2013-01-242-7/+4
* Bump PORTREVISION after DESKTOP_ENTRIES updateMax Brazhnikov2013-01-231-0/+1
* - Update to 9.03.Marcelo Araujo2013-01-145-219/+35
* - Update DESKTOP_ENTRIES:Max Brazhnikov2013-01-071-2/+2
* Take over maintainership.Rene Ladan2012-12-291-1/+1
* Use the new project URL to let the application attach coorectly to theRene Ladan2012-12-282-18/+15
* Cleanup supporting perl version 5.8 and 5.10,Andrej Zverev2012-12-171-7/+1
* - Update to 1.5Wen Heping2012-12-162-3/+3
* Update to 5.0.4Eitan Adler2012-12-152-3/+3
* - Mark conflict with science/openbabelMax Brazhnikov2012-12-111-6/+4
* science/openbabel:Max Brazhnikov2012-12-112-2/+13
* Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIPBaptiste Daroussin2012-12-111-8/+1
* Decommissioning java 1.5 (EOLed since October 2009):Baptiste Daroussin2012-12-101-6/+2
* Decommissioning java 1.5 (EOLed since October 2009):Baptiste Daroussin2012-12-102-2/+2
* - Support CC properlyPawel Pekala2012-12-083-35/+26
* Update to 2.31.Anton Berezin2012-12-073-9/+11
* - Reset MAINTAINER due to unrecoverable email bounceRyan Steinmetz2012-12-051-1/+1
* - Fix build with clangPietro Cerutti2012-12-031-0/+56
* - Update to version 6.1.01Armin Pirkovitsch2012-12-0115-753/+788
* - Update to version 5.0.2Armin Pirkovitsch2012-12-017-275/+79
* 2012-11-26 benchmarks/gsbench: No more public distfilesBaptiste Daroussin2012-11-284-51/+0
* - Update to version 2.0Wen Heping2012-11-156-80/+60