aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* Fix build on 4.xKirill Ponomarev2005-02-191-0/+4
* As previously announced, remove ports that have reached their expiry date,Kris Kennaway2005-02-197-455/+0
* Update to version 2.0.3Kirill Ponomarev2005-02-183-10/+13
* Readd mistakenly removed patch to honour CC/CFLAGS.Kirill Ponomarev2005-02-181-0/+43
* Update to version 1.40Kirill Ponomarev2005-02-183-47/+6
* Fix unfetchable tarball, it was renamed and relocated on originalKirill Ponomarev2005-02-182-4/+4
* - Add (or fix) CONFLICTS line. The ports install bin/digest.Sergey Matveychuk2005-02-121-0/+2
* update to 0.97Maho Nakata2005-02-074-338/+380
* With portmgr hat on, reset maintainership of this port. All of wjv'sMark Linimon2005-01-221-1/+1
* o update to 4.3Maho Nakata2005-01-202-7/+4
* Update to 0.6.2.Akinori MUSHA2004-12-263-7/+26
* This port is scheduled to be removed on 2005-02-18 if it is stillKris Kennaway2004-12-192-0/+4
* Update to version 2.0.8Kirill Ponomarev2004-12-193-10/+19
* - Update to 2004.12.16Sergey Matveychuk2004-12-182-3/+3
* Clean up wording of IGNORE output.Mark Linimon2004-12-171-1/+1
* Unquote the IGNORE string.Mark Linimon2004-12-171-1/+1
* With portmgr hat on, switch from BROKEN to ignore. It does indeed build.Mark Linimon2004-12-171-1/+1
* - Fix OPTIONS handlingPav Lucistnik2004-12-121-3/+1
* Not a real update with the last patch.Sergey Matveychuk2004-12-112-4/+5
* - This update brings seaview to the latest release (dated 09.24.04Sergey Matveychuk2004-12-111-1/+1
* - Add some sites I found with Google, as old master site don't have thisPav Lucistnik2004-12-091-1/+4
* BROKEN: Broken distinfo fileKris Kennaway2004-12-041-0/+2
* Fix build on Python 2.4Hye-Shik Chang2004-12-021-0/+14
* Update MASTER_SITES and WWW: lineKirill Ponomarev2004-11-272-2/+2
* [new port] biology/embassySergey Matveychuk2004-11-275-0/+271
* - Update to 2.9.0Sergey Matveychuk2004-11-269-1812/+1632
* Add missing filesKris Kennaway2004-11-261-0/+11
* - Update to 2.03Sergey Matveychuk2004-11-267-384/+175
* - Remove a junk white space.Sergey Matveychuk2004-11-261-1/+1
* - Update to 2.3.2Sergey Matveychuk2004-11-265-69/+38
* Minor cleanup.Mark Linimon2004-11-231-2/+2
* - Update biology/biojava to 1.30Volker Stolz2004-11-223-613/+255
* With portmgr hat on, reset inactive maintainer. These ports are now upMark Linimon2004-11-208-8/+8
* With portmgr hat on, reset inactive maintainer.Mark Linimon2004-11-201-1/+1
* - Distfiles change every few days, so drop md5 checking on themPav Lucistnik2004-11-182-4/+5
* Add blast, a powerful software package for gene and protein identification,Pav Lucistnik2004-11-126-0/+324
* Bump PORTREVISIONS for all ports that depend on atk or pango to ease in theJoe Marcus Clarke2004-11-084-4/+4
* - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles)Pav Lucistnik2004-11-071-0/+11
* Update to 3.14Kevin Lo2004-11-063-5/+4
* Correct a typo: s/linux-opera/linux-openmotif/g.Jeremy Messenger2004-11-021-1/+1
* - Update to 2004.06.16Pav Lucistnik2004-11-024-167/+276
* Chase the linux-openmotif shared library version and mark biology/spdbv asJeremy Messenger2004-11-021-1/+4
* Now installs on FreeBSD 5.x.Kris Kennaway2004-10-291-7/+1
* - Update to 1.30Pav Lucistnik2004-10-283-128/+209
* Avoid the use of != statements in ports MakefileMaho Nakata2004-10-241-1/+5
* - Update to 3.62Pav Lucistnik2004-10-123-6/+16
* BROKEN on 5.x: Does not compileKris Kennaway2004-09-291-1/+7
* Upgrade to latest revision to make fetchable again.Thierry Thomas2004-09-252-3/+3
* Update config.h and unbreak.Thierry Thomas2004-09-241-2/+2
* The build should be fixed now, so remove BROKEN mark.Alexey Dokuchaev2004-09-231-7/+1
* BROKEN on 5.x: Does not compileKris Kennaway2004-09-191-1/+7
* BROKEN on 5.x: Does not installKris Kennaway2004-09-191-0/+4
* BROKEN on 5.x: Does not installKris Kennaway2004-09-191-0/+4
* Unbreak the build on 5.X and -CURRENT.Alexey Dokuchaev2004-09-181-0/+44
* BROKEN on 5.x: Does not compileKris Kennaway2004-09-181-1/+7
* - add missing MAN1 and MAN3Yen-Ming Lee2004-09-042-357/+537
* - Unbreak by upgrading to 4.2;Thierry Thomas2004-08-204-444/+387
* biology/lsysexp is not brokenEdwin Groothuis2004-08-181-3/+5
* This is now buildable on 5.x, remove BROKEN.Kris Kennaway2004-08-171-7/+1
* After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, allMathieu Arnold2004-08-121-1/+3
* - Update to 5.2Pav Lucistnik2004-07-312-3/+13
* Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here,Eric Anholt2004-07-241-6/+3
* Update to version 2.7.2.1.1Kirill Ponomarev2004-07-105-42/+35
* Apply a big libtool patch to allow porters to use the libtool installed byJoe Marcus Clarke2004-07-101-1/+1
* Fix distsiteVolker Stolz2004-07-061-2/+1
* BROKEN: Checksum mismatchKris Kennaway2004-07-031-0/+2
* Update to 4.6Volker Stolz2004-07-027-51/+58
* BROKEN: Does not buildKris Kennaway2004-07-021-0/+2
* Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3Mark Linimon2004-07-014-9/+11
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of aMark Linimon2004-07-012-8/+4
* Update to 1.7.6.1.Mark Linimon2004-06-304-11/+43
* Drop maintainershipMario Sergio Fujikawa Ferreira2004-06-241-1/+1
* Fix MASTER_SITES:Volker Stolz2004-06-231-2/+2
* Add ariadne 1.3, programs to compare protein sequences andKirill Ponomarev2004-06-225-0/+60
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENKris Kennaway2004-06-222-1/+5
* BROKEN: Checksum mismatchKris Kennaway2004-06-201-0/+2
* Replace explicit imake dependency with USE_IMAKE=yesEric Anholt2004-06-181-5/+1
* Update to 20040613 releaseMario Sergio Fujikawa Ferreira2004-06-132-3/+3
* - Remove obsolete MASTER_SITESKirill Ponomarev2004-06-081-2/+1
* - Update MASTER_SITESPav Lucistnik2004-06-021-3/+3
* [PATCH] biology/mopac patchsite fixEdwin Groothuis2004-06-011-1/+1
* [PATCH] biology/mopac distsite fixEdwin Groothuis2004-06-011-1/+1
* [PATCH] biology/gff2ps distsite fixEdwin Groothuis2004-06-011-3/+3
* - Update WWWPav Lucistnik2004-05-301-1/+1
* - Fix MASTER_SITESKirill Ponomarev2004-05-231-4/+1
* - Remove long time unresponsive MASTER_SITEPav Lucistnik2004-05-221-1/+0
* - Update MASTER_SITES and WWW: lineKirill Ponomarev2004-05-222-2/+2
* Add forgotten patches...Thierry Thomas2004-05-214-2/+62
* BROKEN: Broken pkg-plistKris Kennaway2004-05-211-0/+2
* unbreak, only minor changes in the distfiles (see PR)Oliver Eikemeier2004-05-182-8/+7
* Add a missing BUILD_DEPENDS.Thierry Thomas2004-05-111-0/+1
* Upgrade to 2.0b7 and unbreak.Thierry Thomas2004-05-117-113/+128
* Fix MASTER_SITESMarkus Brueffer2004-05-091-1/+1
* Make portlint happy by replacing space to tabMaho Nakata2004-05-072-4/+4
* - update to 4.5.3Pete Fritchman2004-05-026-17/+235
* - Honor CFLAGSKirill Ponomarev2004-04-161-1/+1
* BROKEN: Checksum mismatchKris Kennaway2004-04-121-0/+2
* Mark this port BROKEN with gtk+-2.4.Joe Marcus Clarke2004-04-111-0/+2
* Tidy up whitespace.Trevor Johnson2004-04-112-6/+6
* Trim whitespace.Trevor Johnson2004-04-112-66/+66
* Add openbabel dependency (bento log forwarded by kris).Trevor Johnson2004-04-091-0/+2
* Update to 1.7.8.Trevor Johnson2004-04-083-16/+16
* After patching, remove the carriage-return characters from povchem.cTrevor Johnson2004-04-071-0/+2
* Chase home page.Trevor Johnson2004-04-071-1/+1
* Fix build with gtk 2.4.Adam Weinberger2004-04-051-1/+6
* Chase the glib20 update, and bump all affected ports' PORTREVISIONs.Joe Marcus Clarke2004-04-054-3/+4
* Remove category pkg/COMMENT files in favour of a COMMENT variable in theKris Kennaway2004-04-022-1/+2
* SIZEify (maintainer timeout)Trevor Johnson2004-03-3134-0/+38
* Add SIZE data.Akinori MUSHA2004-03-221-0/+1
* Do not hardcord PICFLAGMaho Nakata2004-03-201-7/+1
* Backout previous change of PICFLAG, sinceMaho Nakata2004-03-191-0/+6
* -fPIC is appropreate on all architectures.Maho Nakata2004-03-191-6/+0
* Add size data, approved by maintainers.Trevor Johnson2004-03-191-0/+1
* 1) Silent version up without changing the version numberMaho Nakata2004-03-183-6/+6
* Add size data.Trevor Johnson2004-03-181-0/+1
* SIZEify.Trevor Johnson2004-03-182-0/+2
* 1) update to 0.9.3Maho Nakata2004-03-175-11/+44
* Whoa there, boy, that's a mighty big commit y'all have there...Ade Lovett2004-03-141-1/+1
* - Update to version 2003.09.21Kirill Ponomarev2004-03-124-15/+9
* Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignoreTrevor Johnson2004-03-091-0/+1
* Add MD5 of 2004-01-06 version of povchem.c. Its contents areTrevor Johnson2004-03-091-1/+1
* Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.Mark Linimon2004-03-081-2/+2
* BROKEN on amd64 and ia64: Does not compile (missing -fPIC)Kris Kennaway2004-03-071-1/+7
* Maintainer reports being unable to look after this port any longer.Mark Linimon2004-03-071-1/+1
* - Update to version 0.4Kirill Ponomarev2004-02-282-3/+3
* - Fix MASTER_SITESKirill Ponomarev2004-02-281-1/+1
* Update to 20040226 releaseMario Sergio Fujikawa Ferreira2004-02-273-3/+10
* BROKEN on alpha: Does not compileKris Kennaway2004-02-231-1/+7
* BROKEN on alpha 5.x: does not compileKris Kennaway2004-02-231-1/+7
* BROKEN: Checksum mismatchKris Kennaway2004-02-221-0/+2
* BROKEN on 4.x: Configure failsKris Kennaway2004-02-221-1/+7
* BROKEN: Does not fetchKris Kennaway2004-02-221-0/+2
* BROKEN: Checksum mismatchKris Kennaway2004-02-221-0/+2
* Upgrade to 1.23.Dag-Erling Smørgrav2004-02-106-1001/+1125
* USE_SIZEifyMario Sergio Fujikawa Ferreira2004-02-082-0/+2
* Correct whitespace in COMMENTKris Kennaway2004-02-071-1/+1
* Use PLIST_FILES (bento-tested, marcus-reviewed).Trevor Johnson2004-02-0610-5/+5
* Use PLIST_FILES.Trevor Johnson2004-02-062-1/+1
* Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.Joe Marcus Clarke2004-02-0417-5/+17
* - Fix build on AMD64Kirill Ponomarev2004-02-022-2/+41
* - Update to 3.6.bPav Lucistnik2004-02-012-4/+3
* - Update to version 2003.11.25Kirill Ponomarev2004-01-292-2/+2
* Add SIZE.Trevor Johnson2004-01-289-0/+11
* Yet another C++ fix.Christian Weisgerber2004-01-261-1/+9
* Use the CPIO macro defined in bsd.port.mk.Trevor Johnson2004-01-221-1/+1
* Major update from 0.7.2 to 1.4 by new maintainer. This is almost a completeMark Linimon2004-01-216-405/+1689
* silent updates of archives:Maho Nakata2003-12-283-4/+8
* - Fix MASTER_SITESKirill Ponomarev2003-12-201-1/+1
* Mark as broken on 5.x due to the usual gcc terminating-character hassles.Mark Linimon2003-12-191-1/+7
* - Update to last snapshotPav Lucistnik2003-12-072-9/+6
* - Update checksum again, seems author removes .ps version of documentationPav Lucistnik2003-11-224-467/+31
* Define USE_PERL5_BUILD, not erroneous USE_PERL.Trevor Johnson2003-11-202-2/+2
* Define USE_PERL to make Perl available for (mostly deprecated)Trevor Johnson2003-11-202-0/+2
* - Unbreak on 5.xPav Lucistnik2003-11-203-7/+54
* - Update to new version 2003.11.17Kirill Ponomarev2003-11-176-66/+17
* unPERLify by using REINPLACE_CMD and SED where appropriate.Joe Marcus Clarke2003-11-162-3/+1
* Switch to wxgtk2.Max Khon2003-11-141-1/+2
* Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.Trevor Johnson2003-11-133-3/+3
* Remove my e-mail address from comment blocks of portsTrevor Johnson2003-11-131-1/+1
* wxgtk-devel -> wxgtkMax Khon2003-11-101-1/+2
* - Switch to wxgtk2Max Khon2003-11-101-7/+9
* LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3.Eric Anholt2003-11-081-1/+1
* Update to 2.0.7.Adam Weinberger2003-11-083-4/+7
* Mark BROKEN: distfile has changed.Eric Anholt2003-11-071-0/+2
* ${MASTER_SITES} are slow. This patch adds a mirror site to helpJames E. Housley2003-11-061-1/+2
* Make this port use wxgtk 2.4.2.Max Khon2003-11-053-7/+19
* Chase wxgtk library name (and version) change.Max Khon2003-11-051-1/+1
* Pet portlint.Mark Linimon2003-11-041-1/+1
* Date: Tue, 04 Nov 2003 00:42:55 +0900Edwin Groothuis2003-11-041-1/+1
* Mark BROKEN (see bento logs). These ports are scheduled for removalKris Kennaway2003-11-031-1/+1
* ports with possibly unreachable MAINTAINERsEdwin Groothuis2003-11-022-2/+2
* Chased new mastersite per distfile survey. Notified maintainer.Mark Linimon2003-10-261-1/+1
* utilize SITE_PERLYing-Chieh Liao2003-10-244-387/+385
* Respect CC and CFLAGSKris Kennaway2003-10-231-5/+11
* Cosmetic fix: use %%DOCSDIR%% macro.Sergey A. Osokin2003-10-2231-1259/+1259
* - Update to 0.5.2Kirill Ponomarev2003-10-213-297/+298
* Don't remove share/java/classes system directory.Kris Kennaway2003-10-191-1/+0
* Fixes the checksum problem, but doesn't fix the port; adds a BROKENMark Linimon2003-10-162-2/+3
* Update to 0.5.3.Akinori MUSHA2003-10-153-2/+4
* update biology/nab: 4.5.1 -> 4.5.2Daichi GOTO2003-10-145-20/+38
* BROKEN: Broken pkg-plistKris Kennaway2003-10-131-0/+2
* BROKEN: Does not fetchKris Kennaway2003-10-131-0/+2
* Port update (maintainer): biology/wiseEdwin Groothuis2003-09-242-2/+2
* Make portlint(1) happy by changing strip to ${STRIP_CMD}Sergey A. Osokin2003-09-242-2/+2
* Update port: biology/gperiodic to 2.0.6Edwin Groothuis2003-09-083-4/+5
* new port:biology/lsysexpEdwin Groothuis2003-09-035-0/+71
* Silent changes to the port distfile which *not* have significantMaho Nakata2003-09-021-2/+2
* - Add an end-of-string to each line of the inputKirill Ponomarev2003-08-281-7/+7
* Update to 0.5.2.Akinori MUSHA2003-08-233-2/+13
* Fix build on python2.3Hye-Shik Chang2003-08-201-1/+6
* o Main modificationNorikatsu Shigemura2003-08-192-9/+7
* As announced on May 6, remove the broken p5-bioperl-devel port.Kris Kennaway2003-08-088-686/+0
* BROKEN: Checksum mismatchKris Kennaway2003-08-071-0/+2
* Fix python version detection routines to cope with python 2.3'sHye-Shik Chang2003-08-021-1/+1
* Somehow pkg-plist is removed...Maho Nakata2003-08-011-0/+128
* a) Update to 1.7.3Maho Nakata2003-08-013-84/+18
* Add USE_XLIB=yes to compileMaho Nakata2003-07-311-0/+1
* Update to 0.5.1.Akinori MUSHA2003-07-292-2/+2
* A new port garlic, free molecular viewer and editor, free molecularMaho Nakata2003-07-286-0/+399
* - Update to version 2.0.5Kirill Ponomarev2003-07-285-41/+25
* Some clean-up.Maho Nakata2003-07-261-17/+14
* Duplicated the `pre-extract:' and `post-build:'Maho Nakata2003-07-261-9/+0
* a) Some corrupts with Makefile and pkg-plist.Maho Nakata2003-07-252-12/+26
* a) Forgot to update distinfo 52498Maho Nakata2003-07-255-33/+69
* Update to 0.90Maho Nakata2003-07-244-309/+328
* enhancement, build and install the opengl viewer, moldenogl.Maho Nakata2003-07-194-74/+64
* honor CFLAGS and FFLAGSMaho Nakata2003-07-192-3/+4
* Maintainer update of biology/tinker port to version 4.0.Maho Nakata2003-07-195-20/+42
* Add semi-colons(;) after declare statements that go in the povray scene fileYen-Ming Lee2003-07-143-7/+168
* o Change library name from libgd to libgd1.Norikatsu Shigemura2003-07-122-3/+4
* s/NOPORTSDOCS/NOPORTDOCS/ [1]Sergey A. Osokin2003-07-112-6/+6
* update biology/nab: 4.4 -> 4.5.1Daichi GOTO2003-07-0812-403/+393
* Update to 0.5.0.Akinori MUSHA2003-06-263-5/+25
* update ports/biology/act to latest release (v2)Daichi GOTO2003-06-233-988/+1603
* - update to 1.83Erwin Lansing2003-06-183-3/+4
* Move inclusion of bsd.port.pre.mk later in the file for conditional BROKENKris Kennaway2003-06-051-5/+5
* Assign MAINTAINER to ports@FreeBSD.org.Adam Weinberger2003-06-051-1/+1
* Upgrade to 2003.01.21. Appears to only add some more file export/printTim Vanderhoek2003-05-227-40/+49
* Add back the WWW which was inexplicably deleted in a previousTim Vanderhoek2003-05-221-6/+11
* - fix build under gcc 3.3Pete Fritchman2003-05-191-1/+8
* Back out previous commit, the port was fixed a few days ago.Kris Kennaway2003-05-191-7/+1
* BROKEN on 5.1: bad C++Kris Kennaway2003-05-182-2/+14
* - Update to latest release.Michael Landin2003-05-145-62/+3
* BROKEN: Broken pkg-plistKris Kennaway2003-05-071-0/+2
* Update to 2003.04.21Tilman Keskinoz2003-05-058-79/+59
* - unbreak on 4.x: add dependency on gdkpixbuf, fix Makefiles to compile withPete Fritchman2003-05-043-44/+30
* Updated to 0.8.6.Maho Nakata2003-05-035-362/+283
* Update to 20030425 snapshotMario Sergio Fujikawa Ferreira2003-04-263-6/+6
* Remove USE_GNOMENG.Joe Marcus Clarke2003-04-183-3/+0
* Update the biology/tinker Makefile so it builds on -currentEdwin Groothuis2003-03-301-1/+6
* * Fix build with GCC3 (-CURRENT).Christian Weisgerber2003-03-255-24/+89
* Clear moonlight beckons.Ade Lovett2003-03-0728-14/+14
* Retire comment file.Trevor Johnson2003-03-012-1/+1
* Update to 20030227 snapshotMario Sergio Fujikawa Ferreira2003-02-282-2/+2
* De-pkg-commentMario Sergio Fujikawa Ferreira2003-02-242-1/+1
* De-pkg-comment.Akinori MUSHA2003-02-2172-36/+36
* De-pkg-comment.Akinori MUSHA2003-02-218-4/+4
* Fix install and packaging list.Christian Weisgerber2003-02-183-59/+67
* De-pkg-comment.Akinori MUSHA2003-02-182-1/+1
* Update to 1.83.Christian Weisgerber2003-02-1613-182/+179
* * Update to 3.13.Christian Weisgerber2003-02-155-20/+7
* Add dependency on security/p5-Digest-MD5Edwin Groothuis2003-02-131-0/+3
* Update to version 0.5.1.Christian Weisgerber2003-02-128-68/+4
* Remove gaussian98Kris Kennaway2003-02-051-1/+0
* Delete biology/gaussian98. Maintain is too hard andMaho Nakata2003-02-0111-820/+0
* Update to 0.4.0.Akinori MUSHA2003-01-293-14/+26
* add '-f' argument to rm so that the script always work even if aMario Sergio Fujikawa Ferreira2003-01-241-1/+1
* New Port: biology/actEdwin Groothuis2003-01-166-0/+1031
* Add missing fileKris Kennaway2003-01-141-0/+1
* Add some missing filesKris Kennaway2003-01-141-0/+4