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* Fix build on -current by un-clobbering LDFLAGS. Also, don'tAdam Weinberger2014-08-162-4/+13
* - Update to 5.10.2Wen Heping2014-08-104-270/+232
* Convert the Python framework bits to USES=python.Marcus von Appen2014-08-091-2/+2
* - Switch to USES=libtool, drop .la filesDmitry Marakasov2014-08-072-4/+4
* USES=execinfoBaptiste Daroussin2014-08-052-6/+2
* biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagifyKurt Jaeger2014-08-045-217/+296
* biology/p5-bioperl: fix pkg-descr sidenote linkKurt Jaeger2014-08-041-1/+1
* Add a DOCS option.Adam Weinberger2014-08-042-5/+7
* biology/seqtools: 4.27 -> 4.28Kurt Jaeger2014-07-312-3/+3
* Convert a bunch of EXTRACT_SUFX=... into USES=tar:...Adam Weinberger2014-07-308-16/+8
* Convert a bunch of USE_BZIP2 to USES=tar:bzip2Adam Weinberger2014-07-302-4/+2
* Rename biology/ patch-xy patches to reflect the files they modify.Adam Weinberger2014-07-2811-13/+13
* - Update to 1.6.924 [1]Wen Heping2014-07-273-10/+11
* Really fix.Mathieu Arnold2014-07-261-2/+0
* Fix build.Mathieu Arnold2014-07-251-1/+1
* biology/p5-Bio-Graphics: 2.37 -> 2.38Kurt Jaeger2014-07-242-3/+3
* Reset maintainership for ports not staged with no pending PRBaptiste Daroussin2014-07-246-6/+6
* - Switch to USES=libtool, drop .la filesDmitry Marakasov2014-07-232-3/+4
* biology/mummer: Use OPSYS with OSVERSIONJohn Marino2014-07-201-1/+1
* biology/garlic: Stage properly to unbreakJohn Marino2014-07-171-7/+5
* Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist.Adam Weinberger2014-07-161-0/+2
* Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.Adam Weinberger2014-07-152-14/+21
* biology/platon: Unbreak by hosting known distfiles elsewhereJohn Marino2014-07-132-6/+9
* biology/seqtools: 4.26 -> 4.27Kurt Jaeger2014-07-132-4/+3
* Use gcc on all platforms.Adam Weinberger2014-07-111-6/+1
* Stagify.Vanilla I. Shu2014-07-071-6/+5
* Missed a NOPORTDOCS.Adam Weinberger2014-07-051-3/+4
* Remove NOPORTDOCS and NOPORTEXAMPLES from unstaged ports. Stage a couple whileAdam Weinberger2014-07-051-21/+19
* - Chase database/sqlite3 slib bumpMartin Wilke2014-06-281-0/+1
* Fix compilation on 10+ (clang)Martin Wilke2014-06-272-2/+10
* - Mark BROKENWen Heping2014-06-261-0/+2
* Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mkAntoine Brodin2014-06-251-1/+2
* Use MAKE_CMD instead of GMAKEBaptiste Daroussin2014-06-251-2/+2
* Mark as broken: no distinfo providedBaptiste Daroussin2014-06-231-2/+1
* Mark as broken: no distinfo providedBaptiste Daroussin2014-06-231-3/+1
* Fix shebang line in Perl and Python scripts.Raphael Kubo da Costa2014-06-201-13/+6
* Mark BROKEN: Fails to configureAntoine Brodin2014-06-201-0/+2
* biology/blast: Deprecate for removal after 4 September 2014John Marino2014-06-191-0/+3
* Update to 1.2.10.Raphael Kubo da Costa2014-06-183-35/+23
* Update to 3.8.31.Raphael Kubo da Costa2014-06-185-89/+37
* Reset the 99 ports still listed under sylvio@John Marino2014-06-121-1/+1
* Remove all the bootstrap files (.bs) from the plists.Mathieu Arnold2014-06-102-3/+0
* Remove indefinite articles and trailing periods from COMMENT, plusJimmy Olgeni2014-06-096-6/+6
* Remove all space characters from Makefile assignments.Jimmy Olgeni2014-06-091-1/+1
* Stagify, remove BROKEN.Vanilla I. Shu2014-06-072-112/+107
* - Update to 6.6.0Martin Wilke2014-06-055-834/+1183
* UnbreakAntoine Brodin2014-06-051-1/+1
* - Update to 4.5.2Martin Wilke2014-06-042-5/+5
* Update to 0.5.1 snapshot 20100824Baptiste Daroussin2014-06-034-8/+49
* - add stage supportOlli Hauer2014-06-011-5/+1
* - add stage supportOlli Hauer2014-06-011-12/+6
* - add stage supportOlli Hauer2014-06-011-22/+16
* - add stage supportOlli Hauer2014-06-011-6/+3
* - add stage supportOlli Hauer2014-06-011-16/+4
* - add stage supportOlli Hauer2014-06-011-21/+8
* - I forgot to svn add a new patchDanilo Egea Gondolfo2014-06-011-0/+10
* - Update from 1.13.5 to 1.13.7Danilo Egea Gondolfo2014-06-013-9/+9
* Add DOCS and EXAMPLE options to biology/mafftJonathan Chu2014-05-311-0/+2
* - Update to 1.6.923Wen Heping2014-05-305-1532/+1440
* biology/embassy: specify post-extraction with ${TAR}John Marino2014-05-291-1/+1
* Convert to USES=dos2unixBaptiste Daroussin2014-05-261-2/+2
* Multiple ports: reset maintainersEitan Adler2014-05-262-2/+2
* - Update to 4.5.1Martin Wilke2014-05-213-8/+13
* - Update to 7.149Dmitry Marakasov2014-05-213-32/+35
* Quote ${CC} and similar variables in MAKE_ARGS.Tijl Coosemans2014-05-211-1/+1
* - update to 1.31Philippe Audeoud2014-05-162-3/+3
* - Update to 5.10.0Wen Heping2014-05-133-6/+39
* - Update to 5.9.0 [1]Wen Heping2014-05-133-40/+263
* Replace maintainer's email address with one that seems to workAntoine Brodin2014-05-114-4/+4
* Catch a couple of missing convertsion to :tu/:tlBaptiste Daroussin2014-05-051-1/+1
* Support stageBaptiste Daroussin2014-05-051-20/+9
* Convert all :U to :tu and :L to :tlBaptiste Daroussin2014-05-051-3/+3
* biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgradingKurt Jaeger2014-05-032-4/+5
* - Stage support [1]Wen Heping2014-05-023-1064/+5
* biology/seqtools: 4.24 -> 4.25Kurt Jaeger2014-05-022-5/+4
* - StageSteve Wills2014-04-272-1138/+2
* - Update to version 1.13.5Martin Wilke2014-04-264-43/+52
* - Un-break fetch stage: the name scheme of the source tarballs has changedThomas Zander2014-04-235-12/+34
* Remove expired ports:Rene Ladan2014-04-1812-635/+0
* The FreeBSD x11@ and graphics team proudly presentsNiclas Zeising2014-04-174-3/+4
* Remove expired ports:Rene Ladan2014-04-1313-304/+0
* - Back to the heap, I don't use this port anymoreFrederic Culot2014-04-121-1/+1
* Mark as broken unstaged perl portsBaptiste Daroussin2014-04-092-0/+2
* Support stageBaptiste Daroussin2014-04-072-32/+16
* - Update to 0.5.2Wen Heping2014-04-062-4/+5
* - Update to 2.3.6Wen Heping2014-04-062-4/+5
* - Update to 4.8Wen Heping2014-04-053-8/+8
* UnbreakAntoine Brodin2014-03-281-1/+1
* - Fix PLISTSunpoet Po-Chuan Hsieh2014-03-262-0/+3
* - Update to 2.0Sunpoet Po-Chuan Hsieh2014-03-262-3/+3
* Does not build with wx 3.0Baptiste Daroussin2014-03-241-3/+3
* Add staging supportPawel Pekala2014-03-241-12/+5
* - Add staging supportPawel Pekala2014-03-241-19/+9
* - Add staging supportPawel Pekala2014-03-242-31/+31
* - Add staging supportPawel Pekala2014-03-241-17/+13
* Add staging supportPawel Pekala2014-03-242-34/+60
* - Add staging supportPawel Pekala2014-03-241-10/+8
* Add staging supportPawel Pekala2014-03-241-15/+8
* Add staging supportPawel Pekala2014-03-241-8/+5
* Deprecate: Broken for more than 6 monthsAntoine Brodin2014-03-191-0/+2
* Support stagingEmanuel Haupt2014-03-141-9/+3
* Support stagingEmanuel Haupt2014-03-141-2/+2
* - Convert USE_GMAKE to USESMartin Wilke2014-03-1310-11/+10
* Deprecate a few old unmaintained portsAntoine Brodin2014-03-121-0/+2
* Update the default version of GCC used in the Ports Collection fromGerald Pfeifer2014-03-1112-10/+12
* biology/ssaha: undeprecate, this port fetches and builds fine.Rene Ladan2014-03-091-3/+0
* Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained s...Antoine Brodin2014-03-092-0/+4
* UnbreakAntoine Brodin2014-03-091-1/+0
* Convert b* to USES=zipBaptiste Daroussin2014-03-075-10/+5
* Convert to dos2unixBaptiste Daroussin2014-03-071-1/+1
* Update to version 1.13.1.Alexey Dokuchaev2014-03-073-4/+4
* biology/fasta3: Checked new distfile and regenerated distinfo to unbreakJohn Marino2014-03-022-3/+8
* - Update to 35Martin Wilke2014-02-274-27/+50
* - Update to 5.0.7Martin Wilke2014-02-272-24/+21
* - Stage supportMartin Wilke2014-02-272-21/+18
* - Repocopy print/py-reportlab to print/py-reportlab1TAKATSU Tomonari2014-02-251-2/+2
* Remove trailing whitespaces from category biologyEmanuel Haupt2014-02-2110-10/+10
* Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most casesTijl Coosemans2014-02-173-15/+13
* Support stagingEmanuel Haupt2014-02-161-2/+1
* Support stagingEmanuel Haupt2014-02-161-14/+7
* - Support stagingEmanuel Haupt2014-02-161-9/+7
* Support stagingEmanuel Haupt2014-02-161-8/+3
* Support stagingEmanuel Haupt2014-02-161-10/+6
* Fix old makeplist bug.Mathieu Arnold2014-02-122-1/+2
* According to the Porter's Handbook (5.12.2.3.) default options must be added toEmanuel Haupt2014-02-1010-0/+20
* - Stage supportMartin Wilke2014-02-102-22/+36
* Update WWWEmanuel Haupt2014-02-091-1/+1
* Deprecate ports unmaintained for which distillator is not able to find public...Baptiste Daroussin2014-02-081-0/+3
* biology/libgenome: Fix build on dragonflyJohn Marino2014-02-061-0/+10
* biology/tRNAscan-SE: Fix hardcoded perl pathJohn Marino2014-02-061-0/+11
* biology/wise: Add dragonfly supportJohn Marino2014-02-061-0/+13
* Drop maintainership on those.Mathieu Arnold2014-02-061-1/+1
* Drop maintainership BOINC ports, old machine running them gave up.Rene Ladan2014-02-051-1/+1
* - Stage supportMartin Wilke2014-01-312-33/+31
* - Stage supportMartin Wilke2014-01-311-1/+0
* - Stage supportMartin Wilke2014-01-311-1/+0
* - Convert to PYDISTUTILS_AUTOPLISTMartin Wilke2014-01-312-25/+3
* - Convert to PYDISTUTILS_AUTOPLISTMartin Wilke2014-01-312-11/+3
* Unbreak the fetch: one of the documentation PDF files was rerolled.Alexey Dokuchaev2014-01-302-4/+2
* - Mark BROKEN because it does not fetchBernhard Froehlich2014-01-301-0/+2
* - fix pkg-plistAndrej Zverev2014-01-302-4/+3
* - Stagify; cleanup Makefile and reorder the knobs a bitAlexey Dokuchaev2014-01-291-28/+21
* - Fix build on -currentMartin Wilke2014-01-266-26/+60
* - Update to 1.9Sunpoet Po-Chuan Hsieh2014-01-233-8/+7
* Fix properties on pkg-plistBaptiste Daroussin2014-01-224-4/+0
* Support stageBaptiste Daroussin2014-01-211-5/+4
* Support stageBaptiste Daroussin2014-01-211-6/+5
* Support stageBaptiste Daroussin2014-01-212-3/+1
* Support stageBaptiste Daroussin2014-01-212-13/+26
* Stage supportAntoine Brodin2014-01-181-15/+7
* - Update to version 1.13.0 and improve FreeBSD support; it also buildsAlexey Dokuchaev2014-01-179-140/+378
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-7/+3
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-161-2/+1
* Support stageBaptiste Daroussin2014-01-161-19/+10
* Python cleanup:Rene Ladan2014-01-143-3/+3
* - Fix build with clangThomas Zander2014-01-132-13/+8
* - add stage supportAndrej Zverev2014-01-062-6/+4
* - add stage supportAndrej Zverev2014-01-063-4/+2
* - support stageAndrej Zverev2014-01-056-135/+143
* Mark as broken: Invalid checksum, seems like the software was rerolledBaptiste Daroussin2014-01-041-0/+2
* Convert biology to MDOCS and MEXAMPLESAdam Weinberger2014-01-0314-20/+46
* - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mkOlli Hauer2013-12-311-1/+1
* Stage supportAntoine Brodin2013-12-311-3/+2
* Stage supportAntoine Brodin2013-12-311-13/+4
* - USES=fortran gmake.Tijl Coosemans2013-12-292-16/+15
* The hmmer binary was renamed upstream to indicate that it is now anRene Ladan2013-12-292-6/+6
* biology/seqtools: update to 4.24William Grzybowski2013-12-252-3/+3
* Several fixes:Rene Ladan2013-12-242-10/+14
* - Fix build with clang/libc++.Wen Heping2013-12-202-3/+12
* - Respect CC/CFLAGSPawel Pekala2013-12-202-6/+43
* - biology/tinker: USES=fortran, staging.Tijl Coosemans2013-12-192-22/+20
* USES=fortran, staging.Tijl Coosemans2013-12-191-9/+5
* USES=fortran, staging, miscellaneous cleanups.Tijl Coosemans2013-12-192-119/+26
* Version 2013.12.12, USES=fortran, staging.Tijl Coosemans2013-12-181-30/+17
* USES=fortran, fix LDFLAGS, staging.Tijl Coosemans2013-12-181-11/+10
* Fix the build with more standards-compliant compilers such as GCC 4.7. [1]Gerald Pfeifer2013-12-134-1/+63
* In preparation for making libtool generate libraries with a sane name, fix allBaptiste Daroussin2013-12-1112-19/+19
* Support stageBaptiste Daroussin2013-12-111-8/+5
* Support stageBaptiste Daroussin2013-12-111-8/+5
* Support stageBaptiste Daroussin2013-12-111-3/+3
* Respect PORT_OPTIONS:MDOCSAdam Weinberger2013-12-092-8/+8
* - Fix build on headWen Heping2013-12-011-0/+1
* - Update to 1.28Philippe Audeoud2013-11-283-62/+60
* - Fix build with clangPhilippe Audeoud2013-11-285-34/+44
* - Fix buildPhilippe Audeoud2013-11-272-10/+42
* biology/lamarc: fix build on currentWilliam Grzybowski2013-11-262-4/+10
* Convert to USES=dos2unixBaptiste Daroussin2013-11-181-6/+5
* biology/seqtools: update to 4.23William Grzybowski2013-11-152-4/+4
* Add stage supportBaptiste Daroussin2013-11-131-18/+8
* Stage supportBaptiste Daroussin2013-11-131-11/+6
* biology/seqtools: Tools for visualising sequence alignmentsWilliam Grzybowski2013-11-108-60/+61
* . give maintainership to the submitter;Boris Samorodov2013-11-071-3/+3
* - Update to 1.8Sunpoet Po-Chuan Hsieh2013-11-032-3/+3
* - Install official UGENE documentation (PDF)Alexey Dokuchaev2013-11-013-3/+21
* - Update to version 1.12.3Alexey Dokuchaev2013-10-318-79/+325
* Update to version 36.3.6dPawel Pekala2013-10-305-93/+114
* Update to libmpc version 1.0.1 which brings the following fixes:Gerald Pfeifer2013-10-2612-5/+12
* - Remove manual creation and removal of share/applications, as it's now in th...Dmitry Marakasov2013-10-223-4/+0
* Deprecated some ports broken for more than 6 monthBaptiste Daroussin2013-10-181-0/+3
* - Switch to build with lang/ruby19Thomas Abthorpe2013-10-111-1/+1
* Update BioCocoa to the latest release.David Chisnall2013-10-093-75/+68
* - Update to 0.5.1Wen Heping2013-10-043-4/+4
* - Update to 1.7Sunpoet Po-Chuan Hsieh2013-10-043-12/+12
* biology/avida: add <unistd.h>, <typoinfo> for modern compilersJohn Marino2013-10-022-0/+20
* - Remove NO_STAGE as these have been tested to be safeBryan Drewery2013-09-252-2/+0
* Use value of BOINC_CLIENT_HOME in pkg-messageRene Ladan2013-09-242-2/+3
* - Add stagedir supportRene Ladan2013-09-241-12/+17
* Respect 'make check-sanity' for this port too.Rene Ladan2013-09-241-2/+1
* Fix NO_STAGE attributionBaptiste Daroussin2013-09-231-1/+1
* Add NO_STAGE all over the place in preparation for the staging support (cat: ...Baptiste Daroussin2013-09-2094-114/+117
* Mark BROKEN, fails checksumBryan Drewery2013-09-181-0/+2
* Add an explicit dependency on pkgconfAntoine Brodin2013-09-081-1/+1
* - Use single space after WWW:Sunpoet Po-Chuan Hsieh2013-09-081-1/+1
* - convert to the new perl5 frameworkAndrej Zverev2013-09-074-4/+7
* - Make ports use the libc provided iconv implementation on 10-CURRENTGuido Falsi2013-09-053-3/+5
* - Add WWWSunpoet Po-Chuan Hsieh2013-08-301-2/+1
* - Disconnect ports removed in r325546Bryan Drewery2013-08-291-1/+0
* Update to latest GNUstep core libraries.David Chisnall2013-08-298-412/+85
* Make sure to respect CC and CXX, this fixes the build on head without gccBaptiste Daroussin2013-08-281-2/+2
* Update math/gsl to 1.16 and adjust some dependent portsBrendan Fabeny2013-08-271-2/+2
* - Update to 2.3.5Wen Heping2013-08-204-442/+9
* biology/tinker: Regenerate distinfo to unbreak fetchJohn Marino2013-08-182-2/+3
* Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.Gerald Pfeifer2013-08-181-1/+1
* - Remove MAKE_JOBS_SAFE variableAlex Kozlov2013-08-1510-10/+0
* biology/libgenome: Mark jobs unsafeJohn Marino2013-08-141-0/+2
* - update libdg to 2.1.0Dirk Meyer2013-08-092-5/+5
* - Pet portlint: remove blank line among *_DEPENDSSunpoet Po-Chuan Hsieh2013-08-061-1/+0
* - Convert to new perl frameworkAndrej Zverev2013-08-062-2/+4
* - Convert to new perl frameworkMathieu Arnold2013-08-032-2/+2
* - Convert to new perl frameworkAndrej Zverev2013-08-032-2/+2
* - Convert to new perl frameworkMathieu Arnold2013-08-038-24/+19
* - Update to 1.6Philippe Audeoud2013-08-012-4/+5
* KDE3 and QT3 expired on 2013-07-01, remove these ports.Rene Ladan2013-07-276-187/+0
* - Update to 3.0Wen Heping2013-07-203-32/+46
* - Update to 0.56Wen Heping2013-07-203-3/+13
* - Update to 2.37Wen Heping2013-07-203-3/+7
* - Update to 36.3.6Wen Heping2013-07-195-23/+30
* - Update to 6.2.06Martin Wilke2013-07-154-13/+23
* - Update to 4.4.2Martin Wilke2013-07-152-3/+3
* - Update to 7.31.0Sunpoet Po-Chuan Hsieh2013-07-121-0/+1
* Convert from USE_MOTIF to USES=motifBaptiste Daroussin2013-07-101-6/+2
* Convert from USE_MOTIF to USES=motifBaptiste Daroussin2013-07-103-7/+4
* Fix some PORT_OPTIONS conversionsAntoine Brodin2013-07-011-1/+1
* Convert to USES=imakeBaptiste Daroussin2013-06-291-10/+4
* Fix some screw ups introduced in r319847.Raphael Kubo da Costa2013-06-252-4/+4
* Remove stale (since r321246) pkg-plist file.Boris Samorodov2013-06-201-39/+0
* . introdice optionsNG to the port;Boris Samorodov2013-06-202-98/+26