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* biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkitYuri Victorovich2021-05-274-0/+35
* biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set opera...Yuri Victorovich2021-05-274-0/+37
* biology/bowtie2: Update to 2.4.4Jason W. Bacon2021-05-252-4/+4
* biology/py-resdk: Update 13.2.0 -> 13.3.0Yuri Victorovich2021-05-242-4/+4
* biology/seqkit: Update 0.16.0 -> 0.16.1Yuri Victorovich2021-05-202-6/+6
* biology/iolib: Drop maintainershipDanilo Egea Gondolfo2021-05-201-1/+1
* - Update Unipro UGENE to version 38.1 and thus unbreakAlexey Dokuchaev2021-05-182-8/+6
* biology/bowtie2: Update to 2.4.3Jason W. Bacon2021-05-183-43/+26
* biology/ucsc-userapps: Update to v414Jason W. Bacon2021-05-153-11/+13
* *: Remove unnecessary 'port' argument from USES=readlineYasuhiro Kimura2021-05-151-1/+1
* biology/cytoscape: mark unconditionally BROKENDmitry Marakasov2021-05-121-3/+1
* biology/ugene: mark BROKEN (does not fetch)Dmitry Marakasov2021-05-121-0/+1
* biology/seqan3: Correct dependenciesYuri Victorovich2021-05-121-3/+3
* biology/seqan3: Add dependency math/lemonYuri Victorovich2021-05-121-0/+2
* New port: biology/seqan3: C++ header-only library for biological sequence ana...Yuri Victorovich2021-05-125-0/+716
* biology/libsbml: Rename LIBXML option to LIBXML2Po-Chuan Hsieh2021-05-121-6/+5
* math/py-matplotlib: chase minimum Python version in dependent portsThierry Thomas2021-05-113-3/+3
* biology/mothur: Update 1.45.2 -> 1.45.3Yuri Victorovich2021-05-102-4/+4
* Deorbit RESTRICTED && NO_CDROM, part two.Mathieu Arnold2021-05-063-3/+18
* Deorbit RESTRICTED && NO_CDROM, part one.Mathieu Arnold2021-05-064-9/+4
* biology/py-resdk: Update 13.1.0 -> 13.2.0Yuri Victorovich2021-05-062-4/+6
* biology/py-cutadapt: Update strict py-dnaio dep versionJason W. Bacon2021-05-041-1/+2
* biology/py-dnaio: Update to 0.5.1Jason W. Bacon2021-05-043-7/+7
* Clean up some thingsTobias Kortkamp2021-05-021-2/+0
* biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1Yuri Victorovich2021-04-272-7/+12
* biology/ncbi-entrez-direct: Update to 14.9.20210423_1Jason W. Bacon2021-04-275-41/+17
* devel/libepoll-shim: update to 0.0.20210418Jan Beich2021-04-262-11/+1
* biology/jalview: Update 2.07 -> 2.11.1.4Yuri Victorovich2021-04-266-80/+62
* Hook biology/ucsc-userapps to the buildAntoine Brodin2021-04-261-0/+1
* biology/ucsc-userapps: Command line tools from the UCSC Genome Browser projectJason W. Bacon2021-04-2613-0/+342
* biology/ncbi-entrez-direct: Access to the NCBI's interconnected databasesJason W. Bacon2021-04-2511-0/+268
* biology/viennarna: Update 2.4.17 -> 2.4.18Yuri Victorovich2021-04-243-4/+5
* biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5Yuri Victorovich2021-04-242-4/+4
* biology/abyss: Update 2.3.0-3 -> 2.3.1Yuri Victorovich2021-04-232-5/+4
* biology/py-crossmap: Update to 0.5.4Jason W. Bacon2021-04-212-5/+4
* biology/py-crossmap: Fix build with Python 3.8+Kai Knoblich2021-04-211-1/+5
* biology/py-bigwig: Fix packaging with Python 3.8+Kai Knoblich2021-04-211-1/+1
* New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...Yuri Victorovich2021-04-204-0/+38
* biology/snpeff: Improvements to Makefile and patchesJason W. Bacon2021-04-204-12/+13
* biology/abyss: Update 2.2.5 -> 2.3.0-3Yuri Victorovich2021-04-193-6/+11
* biology/snpeff: Genetic variant annotation and effect prediction toolboxJason W. Bacon2021-04-197-0/+180
* biology/bbmap: BBMap short read aligner, and other bioinformatic toolsJason W. Bacon2021-04-196-0/+2064
* biology/bowtie2: Add support for powerpc64leJason W. Bacon2021-04-183-4/+17
* biology/readseq: Remove $FreeBSD$ tag inserted to silence portlintJason W. Bacon2021-04-181-2/+0
* biology/readseq: Read and reformat biosequences, Java command-line versionJason W. Bacon2021-04-185-0/+38
* biology/seqkit: Change WWW to the project URL (from GitHub URL)Yuri Victorovich2021-04-171-1/+1
* New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi...Yuri Victorovich2021-04-174-0/+42
* biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by expl...Yuri Victorovich2021-04-161-1/+1
* Clean up some thingsTobias Kortkamp2021-04-151-1/+0
* devel/onetbb: Update to 2021.2.0 and bump dependenciesGanael LAPLANCHE2021-04-141-1/+1
* biology/diamond: Update to 2.0.9Joseph Mingrone2021-04-132-4/+4
* biology/mothur: Update to 1.45.2Jason W. Bacon2021-04-134-28/+25
* biology/py-crossmap: Lift over genomics coordinates between assembliesJason W. Bacon2021-04-136-0/+59
* biology/py-bigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-04-134-0/+30
* biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs ...Yuri Victorovich2021-04-132-3/+18
* biology/ngs-sdk: Restore static libs installed with symlinks as shared libs a...Yuri Victorovich2021-04-132-3/+9
* New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...Yuri Victorovich2021-04-1231-0/+947
* biology/ngs-sdk: Improve the 'install' target and other parts of Makefile, re...Yuri Victorovich2021-04-127-102/+62
* biology/minimap2: Update to 2.18Jason W. Bacon2021-04-123-9/+7
* biology/vsearch: Update to 2.17.0Jason W. Bacon2021-04-102-4/+4
* biology/hyphy: Update to 2.5.30Joseph Mingrone2021-04-082-4/+4
* Remove expired ports:Rene Ladan2021-04-0817-380/+0
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-07104-104/+0
* all: Remove all other $FreeBSD keywords.Mathieu Arnold2021-04-063-7/+1
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-06187-188/+0
* biology/pear-merger: enable on aarch64, armv6, armv7, riscv64Piotr Kubaj2021-04-061-5/+0
* biology/trimadap: fix build on powerpc64lePiotr Kubaj2021-04-061-1/+8
* biology/pear-merger: fix build on non-x86Piotr Kubaj2021-04-061-0/+6
* biology/subread: Update to 2.0.2Jason W. Bacon2021-03-304-19/+20
* biology/molden: Fix build with gfortran10Yuri Victorovich2021-03-301-1/+9
* biology/igv: Update 2.8.13 -> 2.9.4Yuri Victorovich2021-03-293-42/+44
* biology/vcflib: fix build on powerpc64lePiotr Kubaj2021-03-291-0/+7
* biology/vsearch: Update to 2.16.0Jason W. Bacon2021-03-252-4/+4
* Mark ports recursively depending on Python 2.7 for expiration on June 23.Rene Ladan2021-03-242-0/+6
* biology/vcf2hap: Generate .hap file from VCF for haplohseqJason W. Bacon2021-03-244-0/+35
* biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF fileJason W. Bacon2021-03-234-0/+36
* - Update Unipro UGENE to version 38.0Alexey Dokuchaev2021-03-235-28/+8
* Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms,Alexey Dokuchaev2021-03-221-1/+1
* biology/vcf-split: Split a multi-sample VCF into single-sample VCFsJason W. Bacon2021-03-214-0/+35
* biology/biolibc: Low-level high-performance bioinformatics libraryJason W. Bacon2021-03-215-0/+33
* biology/htslib: Update to 1.12Jason W. Bacon2021-03-2117-148/+32
* biology/generand: Update to 0.1.2Jason W. Bacon2021-03-202-4/+4
* biology/py-multiqc: Update to 1.10Jason W. Bacon2021-03-202-4/+5
* biology/ngs-sdk: Update 2.10.9 -> 2.11.0Yuri Victorovich2021-03-203-5/+6
* PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1Loïc Bartoletti2021-03-161-1/+1
* biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF formatJason W. Bacon2021-03-164-0/+27
* biology/abyss: Add PORTSCOUT lineYuri Victorovich2021-03-141-0/+2
* Move: biology/py-fastTSNE -> math/py-openTSNEYuri Victorovich2021-03-145-49/+0
* biology/gatk: Fix fetchYuri Victorovich2021-03-141-5/+5
* biology/gatk: Update 4.1.9.0 -> 4.2.0.0Yuri Victorovich2021-03-122-7/+6
* biology/diamond: Update to 2.0.8Joseph Mingrone2021-03-112-4/+4
* biology/hmmer: disable on powerpc64le and powerpcspePiotr Kubaj2021-03-111-1/+1
* biology/py-scikit-bio: fix build on powerpc64Piotr Kubaj2021-03-091-1/+1
* biology/py-scikit-bio: fix build on powerpc64lePiotr Kubaj2021-03-091-2/+5
* PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0Loïc Bartoletti2021-03-081-1/+1
* Unbreak INDEXAntoine Brodin2021-03-071-1/+1
* py-cutadapt: Update to 3.3Jason W. Bacon2021-03-072-5/+5
* biology/libbigwig: Update 0.4.4 -> 0.4.6Yuri Victorovich2021-03-063-7/+17
* biology/spoa: fix build on non-x86Piotr Kubaj2021-03-051-1/+7
* biology/bwa: fix build on powerpc64lePiotr Kubaj2021-03-021-2/+5
* biology/py-bx-python: Update 0.8.9 -> 0.8.10Yuri Victorovich2021-02-272-9/+6
* biology/hyphy: Update to 2.5.29Joseph Mingrone2021-02-252-4/+4
* biology/hyphy: Update to 2.5.28Joseph Mingrone2021-02-243-4/+5
* Introduce devel/onetbb and mark devel/tbb as legacyGanael LAPLANCHE2021-02-191-2/+2
* biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDSYuri Victorovich2021-02-192-4/+16
* Mark BROKEN in 13/14 (via latest llvm update).Mark Linimon2021-02-181-0/+3
* biology/diamond: Update to 2.0.7Joseph Mingrone2021-02-182-4/+4
* Update a few GNUstep ports:Neel Chauhan2021-02-151-1/+1
* biology/py-multiqc: Update to 1.9Jason W. Bacon2021-02-052-6/+7
* biology/fastqc: Update to 0.11.9Jason W. Bacon2021-02-042-4/+4
* biology/bioparser: Update 3.0.12 -> 3.0.12-2Yuri Victorovich2021-02-043-17/+17
* biology/py-cutadapt: Update to 3.2Jason W. Bacon2021-02-034-12/+12
* biology/bowtie2: Reverse switch to devel/onetbbJason W. Bacon2021-01-311-2/+2
* biology/bowtie2: Switch to devel/onetbbJason W. Bacon2021-01-311-1/+2
* biology/vsearch: Update to 2.15.2Jason W. Bacon2021-01-303-10/+11
* Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+Sunpoet Po-Chuan Hsieh2021-01-305-5/+5
* biology/hyphy: Update to version 2.5.27Joseph Mingrone2021-01-272-4/+4
* biology/kallisto: Add -lz for pending hdf5 upgradeJason W. Bacon2021-01-261-1/+2
* biology/bedtools: Upgrade to 2.30.0Jason W. Bacon2021-01-256-34/+46
* biology/haplohseq: Fix example scripts for python 3Jason W. Bacon2021-01-246-43/+81
* biology/bedtools: License changed upstreamJason W. Bacon2021-01-221-1/+1
* biology/gatk: Add the WITH_LARGE_FILES option.Yuri Victorovich2021-01-221-0/+30
* biology/gatk: Update 4.1.8.1 -> 4.1.9.0Yuri Victorovich2021-01-222-6/+6
* Fix build on GCC-based systems by adding compiler:c++14-lang to USES:Mark Linimon2021-01-201-1/+1
* Add compiler:c++11-lang to USES to fix build on GCC-based systems:Mark Linimon2021-01-201-1/+1
* biology/bioparser: Cosmetic changesYuri Victorovich2021-01-191-9/+9
* New port: biology/rampler: Standalone module for sampling genomic sequencesYuri Victorovich2021-01-195-0/+66
* New port: biology/edlib: Fast C++ library for sequence alignment using edit d...Yuri Victorovich2021-01-195-0/+40
* New port: biology/spoa: C++ implementation of the partial order alignment (PO...Yuri Victorovich2021-01-196-0/+166
* New port: biology/biosoup: Collection of C++ header-only data structures for ...Yuri Victorovich2021-01-194-0/+46
* New port: biology/bioparser: C++ header only parsing library for several form...Yuri Victorovich2021-01-194-0/+49
* Mark BROKEN on riscv64 the same as on aarch64.Mark Linimon2021-01-191-2/+3
* Mark BROKEN on riscv64 the same as armv*:Mark Linimon2021-01-191-0/+1
* biology/vsearch: enable on powerpc64lePiotr Kubaj2021-01-171-1/+1
* biology/hyphy: Update to version 2.5.26Joseph Mingrone2021-01-162-5/+4
* biology/haplohseq: Restrict to python3Jason W. Bacon2021-01-152-2/+1
* Hook haplohseq to the buildAntoine Brodin2021-01-151-0/+1
* biology/haplohseq: Resurrect and fix python2 dependencyJason W. Bacon2021-01-1413-0/+308
* Remove PY_SPHINX from ports using Python 3Danilo G. Baio2021-01-141-1/+1
* biology/iqtree: Remove USES=compiler:openmp, fix amd64 clang++ buildJoseph Mingrone2021-01-132-2/+14
* biology/hyphy: Remove USES=compiler:openmpJoseph Mingrone2021-01-121-1/+2
* biology/star: Drop dependency on gccJason W. Bacon2021-01-122-15/+15
* biology/stacks: Drop dependency on gccJason W. Bacon2021-01-121-4/+4
* biology/ncbi-blast+: Drop dependency on gccJason W. Bacon2021-01-122-4/+26
* biology/gcta: Drop dependency on gccJason W. Bacon2021-01-121-10/+4
* biology/fasttree: Drop dependency on gccJason W. Bacon2021-01-121-3/+1
* biology/cd-hit: Drop dependency on gccJason W. Bacon2021-01-121-2/+2
* biology/canu: Drop dependency on gccJason W. Bacon2021-01-121-9/+3
* biology/py-biom-format: Update to version 2.1.10Joseph Mingrone2021-01-112-5/+4
* biology/hyphy: Update to version 2.5.25Joseph Mingrone2021-01-112-4/+4
* biology/pooler: Upgrade to 1.76Jason W. Bacon2021-01-092-4/+4
* biology/gemma: Upgrade to 0.98.3Jason W. Bacon2021-01-033-20/+4
* For ports on riscv64 that fail the same (or similar ways) to aarch64, markMark Linimon2021-01-026-0/+6
* - Update Unipro UGENE port to version 37.0Alexey Dokuchaev2020-12-3113-248/+56
* Drop python 2.7 support from a few portsAntoine Brodin2020-12-299-9/+9
* Restrict to Java 8, since this doesn't compile with Java 11Greg Lewis2020-12-271-0/+1
* scipy 1.5.4 is only compatible with python 3.6+Antoine Brodin2020-12-242-2/+2
* biology/hyphy: Update to version 2.5.24Joseph Mingrone2020-12-212-4/+4
* biology/diamond: Update to version 2.0.6Joseph Mingrone2020-12-212-4/+4
* Set CMAKE options explicitlySunpoet Po-Chuan Hsieh2020-12-201-0/+2
* Add EXPAT, LIBXML and XERCES optionsSunpoet Po-Chuan Hsieh2020-12-201-2/+13
* biology/ngs-sdk: Update 2.10.5 -> 2.10.9Yuri Victorovich2020-12-183-5/+5
* biology/py-pyfaidx: Update 0.5.9.1 -> 0.5.9.2Yuri Victorovich2020-12-172-4/+4
* Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to...Loïc Bartoletti2020-12-161-1/+1
* - Upgrade math/eigen3 to 3.3.8;Thierry Thomas2020-12-134-3/+4
* Update to 5.19.0Sunpoet Po-Chuan Hsieh2020-12-114-12/+18
* Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0Loïc Bartoletti2020-12-091-1/+1
* biology/viennarna: Update 2.4.16 -> 2.4.17Yuri Victorovich2020-12-074-17/+6
* biology/diamond: Update to version 2.0.5Joseph Mingrone2020-12-022-4/+4
* biology/igv: Fix fetch by fixing a small left-over mistakeYuri Victorovich2020-12-011-1/+1
* biology/igv: 2.5.3 -> 2.8.13Yuri Victorovich2020-11-304-26/+310
* biology/tabixpp: fix build on GCC architecturesPiotr Kubaj2020-11-241-1/+1
* Add education virtual categoryAdam Weinberger2020-11-202-2/+2
* biology/hyphy: Update to version 2.5.23Joseph Mingrone2020-11-192-4/+4
* biology/hyphy: Update to version 2.5.22Joseph Mingrone2020-11-182-4/+4
* biology/ncbi-blast+: Upgrade to 2.11.0Jason W. Bacon2020-11-174-21/+34
* biology/py-pysam: Update 0.16.0 -> 0.16.0.1Yuri Victorovich2020-11-162-4/+4
* biology/pooler: Optimise DNA sequencing primer-set combinationsJason W. Bacon2020-11-164-0/+52
* biology/viennarna: Update 2.4.15 -> 2.4.16Yuri Victorovich2020-11-123-4/+5
* biology/py-xenaPython: Update 1.0.10 -> 1.0.14Yuri Victorovich2020-11-112-4/+4
* biology/vt: Fix build with htslib 1.11Jason W. Bacon2020-11-092-2/+13
* biology/gcta: Switch eigen3 dep to USES frameworkJason W. Bacon2020-11-081-2/+1
* biology/bowtie2: Upgrade to 2.4.2Jason W. Bacon2020-11-073-12/+20
* biology/bcftools: Upgrade to 1.11Jason W. Bacon2020-11-066-71/+18
* biology/samtools: Upgrade to 1.11Jason W. Bacon2020-11-065-67/+38
* biology/htslib: Upgrade to 1.11.0Jason W. Bacon2020-11-067-103/+51
* biology/hyphy: Update to version 2.5.21Joseph Mingrone2020-10-304-16/+5
* biology/mummer: fix build on powerpc64 elfv2 and powerpc64lePiotr Kubaj2020-10-262-1/+12
* biology/mothur: fix build on powerpc64lePiotr Kubaj2020-10-191-0/+19
* biology/hyphy: Update to version 2.5.20Joseph Mingrone2020-10-173-4/+15
* biology/py-biopython: Upgrade to 1.78Jason W. Bacon2020-10-172-4/+4
* biology/hyphy: Update to version 2.5.19Joseph Mingrone2020-10-133-24/+4
* biology/gmap: enable on powerpc64lePiotr Kubaj2020-10-091-1/+1
* Update PyQt to 5.15.0, py-sip to 4.19.24 and qscintilla2 to 2.11.5Loïc Bartoletti2020-10-051-0/+1
* Convert REINPLACE_CMD to patch fileSunpoet Po-Chuan Hsieh2020-09-302-1/+22
* Update PYTHON option to use Python 3Sunpoet Po-Chuan Hsieh2020-09-281-5/+2
* Allow building on powerpc64le.Mark Linimon2020-09-271-1/+1
* Canonicalize powerpc64le CXXFLAGS to be the same as powerpc64.Mark Linimon2020-09-271-0/+1
* biology/abyss: Update 2.2.4 -> 2.2.5Yuri Victorovich2020-09-273-6/+5
* biology/ncbi-cxx-toolkit: Fix build on 13Yuri Victorovich2020-09-271-0/+10
* biology/py-biom-format: Fix fetch and relax scipy requirementJoseph Mingrone2020-09-262-4/+5
* biology/ncbi-cxx-toolkit: Update 21.0.0 -> 22.0.0Yuri Victorovich2020-09-253-10/+17
* biology/py-biom-format: Update to version 2.1.8Joseph Mingrone2020-09-252-15/+7
* biology/py-scikit-bio: Fix build on the i386 architectureYuri Victorovich2020-09-251-1/+8
* Also enable on powerpc64le.Mark Linimon2020-09-251-1/+1
* Also enable on powerpc64le.Mark Linimon2020-09-251-1/+1
* biology/py-biom-format: Restore in preparation for an update to v2.1.8Joseph Mingrone2020-09-254-0/+65
* biology/gmap: Upgrade to 2020.09.12Jason W. Bacon2020-09-223-27/+17
* Fix build with -fno-commonStefan Eßer2020-09-223-1/+23
* Unbreak bulk -aAntoine Brodin2020-09-191-1/+1
* Remove expired ports:Rene Ladan2020-09-1922-506/+0
* biology/subread: Add -fcommon for clang 11Jason W. Bacon2020-09-181-0/+1
* biology/canu: Upgrade to 2.1Jason W. Bacon2020-09-154-40/+24
* biology/py-pyfaidx: Update 0.5.5.2 -> 0.5.9.1Yuri Victorovich2020-09-142-5/+4
* biology/gatk: Fix buildYuri Victorovich2020-09-091-3/+3
* biology/viennarna: Update 2.4.14 -> 2.4.15Yuri Victorovich2020-09-082-5/+4
* biology/gatk: Update 4.1.8.0 -> 4.1.8.1Yuri Victorovich2020-09-062-6/+6
* biology/mapm3: Reformat patches.Fernando Apesteguía2020-09-0423-125/+128
* biology/mapm3: Fix build with llvm11, gcc10Fernando Apesteguía2020-09-041-4/+14
* biology/hyphy: Update to version 2.5.18 and add AVX optionJoseph Mingrone2020-09-033-6/+29
* biology/py-ete3: Update 3.1.1 -> 3.1.2Yuri Victorovich2020-09-022-4/+4
* biology/diamond: Update to version 2.0.4Joseph Mingrone2020-08-313-49/+4
* biology/picard-tools: Remove extraneous fileJason W. Bacon2020-08-301-112/+0
* Extend expiration of ports broken with -fno-commonNiclas Zeising2020-08-303-7/+9
* Chase security/p11-kit updateRoman Bogorodskiy2020-08-302-2/+2
* biology/: Fix build with clang11 and deprecate ports@ portsTobias C. Berner2020-08-293-0/+15
* biology/phyml: fix build on recent currentTobias C. Berner2020-08-294-0/+74
* biology/cufflinks: fix build on recent currentTobias C. Berner2020-08-291-0/+11
* biology/bwa: fix build on recent currentTobias C. Berner2020-08-282-1/+6
* Remove expired ports:Rene Ladan2020-08-276-129/+0
* biology/hhsuite: Update 3.2.0 -> 3.3.0Yuri Victorovich2020-08-274-46/+4
* biology/paml: fix the build with LLVM 11Kyle Evans2020-08-211-0/+14
* biology/hyphy: Update to version 2.5.17Joseph Mingrone2020-08-212-4/+4
* devel/ipython: Update to 7.17.0Danilo G. Baio2020-08-151-1/+1
* Remove deprecated ports:Rene Ladan2020-08-154-65/+0
* biology/graphlan: Remove the 2.7 limitation on python because it's no longer ...Yuri Victorovich2020-08-141-4/+2
* biology/groopm: Remove python's 2.7 restriction placed here by mistakeYuri Victorovich2020-08-141-5/+2
* biology/diamond: Update to version 2.0.2Joseph Mingrone2020-08-073-4/+49
* biology/py-gtfparse: Update 1.2.0 -> 1.2.1Yuri Victorovich2020-08-072-5/+4
* biology/samtools: Upgrade to 1.10Jason W. Bacon2020-08-045-22/+68
* biology/bcftools: Upgrade to 1.10.2Jason W. Bacon2020-08-046-78/+69
* biology/vt: Patch to work with htslib 1.10.2Jason W. Bacon2020-08-045-1/+62
* biology/htslib: Upgrade to 1.10.2Jason W. Bacon2020-08-0412-43/+113
* biology/kallisto: Revert to 0.46.1Jason W. Bacon2020-08-035-60/+32
* biology/diamond: Update to version 2.0.0Joseph Mingrone2020-07-283-14/+4
* Deprecate ports broken for more than 6 monthsAntoine Brodin2020-07-261-0/+2
* Update to 2.0.1Sunpoet Po-Chuan Hsieh2020-07-242-10/+4
* Add rubygem-bio-shell 1.0.0Sunpoet Po-Chuan Hsieh2020-07-244-0/+38
* Add rubygem-bio-old-biofetch-emulator 1.0.0Sunpoet Po-Chuan Hsieh2020-07-244-0/+33
* Add rubygem-bio-executables 1.0.0Sunpoet Po-Chuan Hsieh2020-07-244-0/+43
generated by cgit (git 2.34.1) at 2025-02-21 06:43:46 +0800