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* - Use the correct MASTER_SITE_SUBDIR, make it fetchableRong-En Fan2006-07-041-1/+1
* Mark as BROKEN on sparc64 due to internal compiler error.Mark Linimon2006-07-041-1/+7
* Update to 1.10 (maintained by others) and unbreak.Maho Nakata2006-07-0311-268/+50
* o Update to 0.99rc1Maho Nakata2006-07-015-39/+203
* - Provide SSE optimized application as an optionPav Lucistnik2006-06-252-1/+12
* - Instruct amd64 users to libmap libpthread.so.2 to libc_r.so.6Pav Lucistnik2006-06-232-3/+15
* SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculatedPav Lucistnik2006-06-207-0/+110
* Re-add CONFIGURE_TARGET and fix libm detection.Thierry Thomas2006-06-191-1/+5
* - Upgrade to to 1.9.9 and unbreak;Thierry Thomas2006-06-184-146/+134
* USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more thanErwin Lansing2006-06-111-1/+0
* - Update PORTREVISION to match latest release (see main web site)Pav Lucistnik2006-06-113-8/+27
* - Update to 34.t25.d9Pav Lucistnik2006-06-102-5/+5
* Update biology/ncbi-toolkit to the latest release.Ion-Mihai Tetcu2006-06-063-5/+11
* - Add MASTER_SITEErwin Lansing2006-06-062-30/+31
* - Update to 34.t25.d8 [1]Erwin Lansing2006-06-062-5/+5
* - update to 34.t25.d7Sergey Matveychuk2006-05-253-77/+7
* BROKEN: UnfetchableKris Kennaway2006-05-221-0/+2
* - Update to 3.15Sergey Matveychuk2006-05-212-4/+4
* - Updated from 0.07 to 0.12Aaron Dalton2006-05-203-12/+25
* Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.Aaron Dalton2006-05-145-0/+110
* - Update to 34.t25.d6Sergey Matveychuk2006-05-084-38/+80
* Update to 21.u1.d1 (fixes fetch).Sam Lawrance2006-05-075-27/+18
* - Satisfy portlintSergey Matveychuk2006-05-071-4/+3
* Add protomol 2.0.3, OO, component based, framework for molecularEmanuel Haupt2006-05-065-0/+201
* Remove USE_REINPLACE from all categories starting with BEdwin Groothuis2006-05-0421-22/+0
* - Update to 1.89Yen-Ming Lee2006-05-036-16/+60
* Bioperl-run contain modules that provides a PERL interface to variousRenato Botelho2006-05-035-0/+784
* Bioperl-run contain modules that provides a PERL interface to variousRenato Botelho2006-05-035-0/+752
* - Update to 1.0.0Pav Lucistnik2006-04-263-40/+174
* BROKEN: Does not compileKris Kennaway2006-04-231-0/+2
* Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking aboutMark Linimon2006-04-055-5/+5
* Reset jeremy@external.org who has not responded to email asking aboutMark Linimon2006-04-051-1/+1
* - Update to 2006.02.13Marcus Alves Grando2006-04-053-8/+8
* Use SUB_FILES for pkg-messageEdwin Groothuis2006-04-014-1/+4
* For EMBOSS:Thierry Thomas2006-03-3122-1458/+7820
* - Update to 34.t25.d5Pav Lucistnik2006-03-212-4/+4
* - Update to 5.743Renato Botelho2006-03-194-44/+13
* Add lagan 1.2, efficient tools for large-scale multiple alignments ofRenato Botelho2006-03-176-0/+136
* Add mafft 5.734, multiple sequence alignments based on fast FourierRenato Botelho2006-03-156-0/+119
* Add dotter 20021204 # last modified date in FTP server, a viewer forRenato Botelho2006-03-154-0/+63
* Add blat 33, a fast tool for local sequence similarity searches.Renato Botelho2006-03-156-0/+100
* Add belvu 2.29, a viewer for multiple sequence alignments.Renato Botelho2006-03-154-0/+54
* Update to 1.5Maho Nakata2006-03-154-211/+229
* Bump PORTREVISION on glib12/gtk12 consumer ports to ease the upgrade path.Ade Lovett2006-03-071-1/+1
* Conversion to a single libtool environment.Ade Lovett2006-02-234-2/+8
* BROKEN: Configure failsKris Kennaway2006-02-201-0/+2
* Jalview is a multiple alignment editor written in Java. It is used widely in aHerve Quiroz2006-02-137-0/+137
* Reset maintainership to ports@ after ~4 months without any response to anyAlexander Leidinger2006-02-121-1/+1
* Update to 3.27.Sam Lawrance2006-02-103-10/+18
* Update to 34.t25.d4.Sam Lawrance2006-02-1011-167/+155
* Update to 2006.01.25.Sam Lawrance2006-02-092-10/+9
* Put PORTEPOCH back.Sam Lawrance2006-02-091-0/+1
* Update to 3.65.Sam Lawrance2006-02-083-73/+17
* Remove CONFLICTS with nss.Joe Marcus Clarke2006-02-031-1/+1
* Add missing USE_ICONVKris Kennaway2006-01-261-0/+1
* SHA256ify (manually done and checked)Edwin Groothuis2006-01-222-1/+5
* SHA256ifyEdwin Groothuis2006-01-2230-0/+41
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryEdwin Groothuis2006-01-224-12/+12
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryEdwin Groothuis2006-01-221-1/+1
* Utilize EXAMPLESDIR.Alexey Dokuchaev2006-01-201-3/+3
* - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoidAlexey Dokuchaev2006-01-205-0/+57
* - Remove expired portsPav Lucistnik2006-01-1517-462/+0
* - Update to 2.0.20060101Pav Lucistnik2006-01-152-2/+4
* - Update to 2005.12.06Pav Lucistnik2006-01-154-44/+60
* - Chase openbabel updatePav Lucistnik2006-01-141-3/+2
* BROKEN: Broken dependencyKris Kennaway2006-01-141-0/+2
* - Update graphics/libglut to 6.4.1.Sergey Matveychuk2006-01-123-4/+7
* Fix maintainer addressEdwin Groothuis2006-01-096-6/+6
* Hash with SHA-256.Trevor Johnson2006-01-081-0/+1
* - Remove symlinks that belong to mtreePav Lucistnik2006-01-061-2/+0
* possible fix to unbreak biology/L-BreederEdwin Groothuis2006-01-039-107/+60
* - New upstream version; two patches incorporated.Tim Bishop2005-12-105-39/+9
* Update to 1.3.1Emanuel Haupt2005-12-072-3/+3
* - Update to 2005.13.07 to make fetchable againTim Bishop2005-12-063-6/+31
* - Update to 3.18 to make fetchable againTim Bishop2005-12-062-6/+11
* Update to 0.5.1Marcus Alves Grando2005-12-063-23/+6
* - Fix fetch problemsTim Bishop2005-12-062-3/+5
* Add conflicts:Edwin Groothuis2005-12-051-1/+1
* Add conflicst:Edwin Groothuis2005-12-051-0/+2
* Fix port: biology/p5-bioperl-develEdwin Groothuis2005-12-041-0/+2
* - Re-add p5-bioperl-devel, development version of biology/p5-bioperlSimon Barner2005-12-036-0/+2586
* - Unbreak by updating to 4.4Simon Barner2005-12-014-25/+22
* Add the right MASTER_SITE_SUBDIR, so that this port is fetchable fromBill Fenner2005-11-261-0/+1
* - Add SHA256Pav Lucistnik2005-11-2416-0/+16
* - Drop old povchem.c checksumPav Lucistnik2005-11-241-1/+4
* - BROKEN: Size mismatchPav Lucistnik2005-11-241-0/+2
* BROKEN: Size mismatchKris Kennaway2005-11-161-0/+2
* Mass-conversion to the USE_AUTOTOOLS New World Order. The code presentAde Lovett2005-11-152-2/+2
* - Mark it as DEPRECATED - master site disapearedRenato Botelho2005-11-111-0/+3
* - Mark it as DEPRECATED - master site disapearedRenato Botelho2005-11-111-0/+3
* - Mark it as DEPRECATED (mastersite disapeared)Renato Botelho2005-11-111-0/+3
* With portmgr hat on, reset maintainership of knu's ports since he hasMark Linimon2005-11-111-1/+1
* Update to 1.41Marcus Alves Grando2005-11-115-44/+87
* Update to 3.14bMarcus Alves Grando2005-11-102-9/+11
* Remove expired portsKris Kennaway2005-11-057-110/+0
* Bump PORTREVISION to chase the glib20 shared library update.Joe Marcus Clarke2005-11-054-3/+4
* Mark DEPRECATED since upstream is unmaintained and mastersite is gone.Sam Lawrance2005-10-291-0/+3
* BROKEN: UnfetchableKris Kennaway2005-10-281-0/+2
* Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser forEmanuel Haupt2005-10-165-0/+61
* - Update to 20050605Sergey Matveychuk2005-10-125-20/+36
* - Update to 3.13. It fixes fetching.Sergey Matveychuk2005-10-124-167/+61
* Update to 0.9.8Maho Nakata2005-10-103-318/+363
* Checking MACHINE_ARCH is deprecated.Trevor Johnson2005-09-241-1/+1
* Update to version 7Herve Quiroz2005-09-203-47/+160
* Don't strip static libraries on installation ;)Volker Stolz2005-09-141-1/+2
* Add p5-Bio-Das 1.02, client-side library for Distributed GenomeRenato Botelho2005-09-015-0/+158
* This port is scheduled for deletion on 2005-09-22 if it is still brokenKris Kennaway2005-07-231-0/+2
* - Update to 1.0.0Patrick Li2005-06-133-368/+365
* change the libtool version to use from 1.3 to 1.5Oliver Lehmann2005-06-011-1/+1
* - Update to 2.10.0Pav Lucistnik2005-05-305-42/+78
* - Update to 2.10.0Pav Lucistnik2005-05-303-995/+1221
* Finish repo copy of wxgtk 2.4.2 ports to wxgtk24*Max Khon2005-05-132-3/+3
* - Fix the packing list [1]Jean-Yves Lefort2005-04-303-5/+6
* - Update to 5.0Jean-Yves Lefort2005-04-2915-782/+851
* Bump PORTEPOCH. 3.6 < 3.62Tilman Keskinoz2005-04-221-0/+1
* Upgrade to 3.62Tilman Keskinoz2005-04-212-3/+3
* - update grappa to 2.0Yen-Ming Lee2005-04-164-29/+13
* At Kris's request, back out the MACHINE_ARCH spelling correction untilDavid E. O'Brien2005-04-129-9/+9
* - Change maintainer's email address.Florent Thoumie2005-04-121-1/+1
* - ARCH is defined in bsd.port.pre.mkFlorent Thoumie2005-04-111-1/+3
* Assist getting more ports working on AMD64 by obeying theDavid E. O'Brien2005-04-119-9/+9
* Upgrade to 0.5 and take maintainership.Thierry Thomas2005-04-094-9/+25
* Try to unbreak on amd64 and ia64Kris Kennaway2005-03-271-1/+1
* BROKEN: UnfetchableKris Kennaway2005-03-271-0/+2
* Fix build on amd64Maho Nakata2005-03-241-2/+11
* - Add 'java' categoryHerve Quiroz2005-03-201-2/+1
* - Fix man page damage I did last nightPav Lucistnik2005-03-201-7/+9
* - Update to 2.2.10 from 20041020Pav Lucistnik2005-03-206-196/+161
* From the PR:Alexey Dokuchaev2005-03-182-4/+16
* Bump PORTREVISION to chase the glib20 shared lib version change.Joe Marcus Clarke2005-03-124-3/+4
* - biology/act is redundant after biology/artemis updateSergey Matveychuk2005-03-125-1648/+0
* - Update to version 6Sergey Matveychuk2005-03-124-1505/+1529
* Add finchtv 1.3.0, a chromatogram trace viewer.Thierry Thomas2005-03-126-0/+209
* Fix build on 4.xKirill Ponomarev2005-02-191-0/+4
* As previously announced, remove ports that have reached their expiry date,Kris Kennaway2005-02-197-455/+0
* Update to version 2.0.3Kirill Ponomarev2005-02-183-10/+13
* Readd mistakenly removed patch to honour CC/CFLAGS.Kirill Ponomarev2005-02-181-0/+43
* Update to version 1.40Kirill Ponomarev2005-02-183-47/+6
* Fix unfetchable tarball, it was renamed and relocated on originalKirill Ponomarev2005-02-182-4/+4
* - Add (or fix) CONFLICTS line. The ports install bin/digest.Sergey Matveychuk2005-02-121-0/+2
* update to 0.97Maho Nakata2005-02-074-338/+380
* With portmgr hat on, reset maintainership of this port. All of wjv'sMark Linimon2005-01-221-1/+1
* o update to 4.3Maho Nakata2005-01-202-7/+4
* Update to 0.6.2.Akinori MUSHA2004-12-263-7/+26
* This port is scheduled to be removed on 2005-02-18 if it is stillKris Kennaway2004-12-192-0/+4
* Update to version 2.0.8Kirill Ponomarev2004-12-193-10/+19
* - Update to 2004.12.16Sergey Matveychuk2004-12-182-3/+3
* Clean up wording of IGNORE output.Mark Linimon2004-12-171-1/+1
* Unquote the IGNORE string.Mark Linimon2004-12-171-1/+1
* With portmgr hat on, switch from BROKEN to ignore. It does indeed build.Mark Linimon2004-12-171-1/+1
* - Fix OPTIONS handlingPav Lucistnik2004-12-121-3/+1
* Not a real update with the last patch.Sergey Matveychuk2004-12-112-4/+5
* - This update brings seaview to the latest release (dated 09.24.04Sergey Matveychuk2004-12-111-1/+1
* - Add some sites I found with Google, as old master site don't have thisPav Lucistnik2004-12-091-1/+4
* BROKEN: Broken distinfo fileKris Kennaway2004-12-041-0/+2
* Fix build on Python 2.4Hye-Shik Chang2004-12-021-0/+14
* Update MASTER_SITES and WWW: lineKirill Ponomarev2004-11-272-2/+2
* [new port] biology/embassySergey Matveychuk2004-11-275-0/+271
* - Update to 2.9.0Sergey Matveychuk2004-11-269-1812/+1632
* Add missing filesKris Kennaway2004-11-261-0/+11
* - Update to 2.03Sergey Matveychuk2004-11-267-384/+175
* - Remove a junk white space.Sergey Matveychuk2004-11-261-1/+1
* - Update to 2.3.2Sergey Matveychuk2004-11-265-69/+38
* Minor cleanup.Mark Linimon2004-11-231-2/+2
* - Update biology/biojava to 1.30Volker Stolz2004-11-223-613/+255
* With portmgr hat on, reset inactive maintainer. These ports are now upMark Linimon2004-11-208-8/+8
* With portmgr hat on, reset inactive maintainer.Mark Linimon2004-11-201-1/+1
* - Distfiles change every few days, so drop md5 checking on themPav Lucistnik2004-11-182-4/+5
* Add blast, a powerful software package for gene and protein identification,Pav Lucistnik2004-11-126-0/+324
* Bump PORTREVISIONS for all ports that depend on atk or pango to ease in theJoe Marcus Clarke2004-11-084-4/+4
* - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles)Pav Lucistnik2004-11-071-0/+11
* Update to 3.14Kevin Lo2004-11-063-5/+4
* Correct a typo: s/linux-opera/linux-openmotif/g.Jeremy Messenger2004-11-021-1/+1
* - Update to 2004.06.16Pav Lucistnik2004-11-024-167/+276
* Chase the linux-openmotif shared library version and mark biology/spdbv asJeremy Messenger2004-11-021-1/+4
* Now installs on FreeBSD 5.x.Kris Kennaway2004-10-291-7/+1
* - Update to 1.30Pav Lucistnik2004-10-283-128/+209
* Avoid the use of != statements in ports MakefileMaho Nakata2004-10-241-1/+5
* - Update to 3.62Pav Lucistnik2004-10-123-6/+16
* BROKEN on 5.x: Does not compileKris Kennaway2004-09-291-1/+7
* Upgrade to latest revision to make fetchable again.Thierry Thomas2004-09-252-3/+3
* Update config.h and unbreak.Thierry Thomas2004-09-241-2/+2
* The build should be fixed now, so remove BROKEN mark.Alexey Dokuchaev2004-09-231-7/+1
* BROKEN on 5.x: Does not compileKris Kennaway2004-09-191-1/+7
* BROKEN on 5.x: Does not installKris Kennaway2004-09-191-0/+4
* BROKEN on 5.x: Does not installKris Kennaway2004-09-191-0/+4
* Unbreak the build on 5.X and -CURRENT.Alexey Dokuchaev2004-09-181-0/+44
* BROKEN on 5.x: Does not compileKris Kennaway2004-09-181-1/+7
* - add missing MAN1 and MAN3Yen-Ming Lee2004-09-042-357/+537
* - Unbreak by upgrading to 4.2;Thierry Thomas2004-08-204-444/+387
* biology/lsysexp is not brokenEdwin Groothuis2004-08-181-3/+5
* This is now buildable on 5.x, remove BROKEN.Kris Kennaway2004-08-171-7/+1
* After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, allMathieu Arnold2004-08-121-1/+3
* - Update to 5.2Pav Lucistnik2004-07-312-3/+13
* Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here,Eric Anholt2004-07-241-6/+3
* Update to version 2.7.2.1.1Kirill Ponomarev2004-07-105-42/+35
* Apply a big libtool patch to allow porters to use the libtool installed byJoe Marcus Clarke2004-07-101-1/+1
* Fix distsiteVolker Stolz2004-07-061-2/+1
* BROKEN: Checksum mismatchKris Kennaway2004-07-031-0/+2
* Update to 4.6Volker Stolz2004-07-027-51/+58
* BROKEN: Does not buildKris Kennaway2004-07-021-0/+2
* Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3Mark Linimon2004-07-014-9/+11
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of aMark Linimon2004-07-012-8/+4
* Update to 1.7.6.1.Mark Linimon2004-06-304-11/+43
* Drop maintainershipMario Sergio Fujikawa Ferreira2004-06-241-1/+1
* Fix MASTER_SITES:Volker Stolz2004-06-231-2/+2
* Add ariadne 1.3, programs to compare protein sequences andKirill Ponomarev2004-06-225-0/+60
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENKris Kennaway2004-06-222-1/+5
* BROKEN: Checksum mismatchKris Kennaway2004-06-201-0/+2
* Replace explicit imake dependency with USE_IMAKE=yesEric Anholt2004-06-181-5/+1
* Update to 20040613 releaseMario Sergio Fujikawa Ferreira2004-06-132-3/+3
* - Remove obsolete MASTER_SITESKirill Ponomarev2004-06-081-2/+1
* - Update MASTER_SITESPav Lucistnik2004-06-021-3/+3
* [PATCH] biology/mopac patchsite fixEdwin Groothuis2004-06-011-1/+1
* [PATCH] biology/mopac distsite fixEdwin Groothuis2004-06-011-1/+1
* [PATCH] biology/gff2ps distsite fixEdwin Groothuis2004-06-011-3/+3
* - Update WWWPav Lucistnik2004-05-301-1/+1
* - Fix MASTER_SITESKirill Ponomarev2004-05-231-4/+1
* - Remove long time unresponsive MASTER_SITEPav Lucistnik2004-05-221-1/+0
* - Update MASTER_SITES and WWW: lineKirill Ponomarev2004-05-222-2/+2
* Add forgotten patches...Thierry Thomas2004-05-214-2/+62
* BROKEN: Broken pkg-plistKris Kennaway2004-05-211-0/+2
* unbreak, only minor changes in the distfiles (see PR)Oliver Eikemeier2004-05-182-8/+7
* Add a missing BUILD_DEPENDS.Thierry Thomas2004-05-111-0/+1
* Upgrade to 2.0b7 and unbreak.Thierry Thomas2004-05-117-113/+128
* Fix MASTER_SITESMarkus Brueffer2004-05-091-1/+1
* Make portlint happy by replacing space to tabMaho Nakata2004-05-072-4/+4
* - update to 4.5.3Pete Fritchman2004-05-026-17/+235
* - Honor CFLAGSKirill Ponomarev2004-04-161-1/+1
* BROKEN: Checksum mismatchKris Kennaway2004-04-121-0/+2
* Mark this port BROKEN with gtk+-2.4.Joe Marcus Clarke2004-04-111-0/+2
* Tidy up whitespace.Trevor Johnson2004-04-112-6/+6
* Trim whitespace.Trevor Johnson2004-04-112-66/+66
* Add openbabel dependency (bento log forwarded by kris).Trevor Johnson2004-04-091-0/+2
* Update to 1.7.8.Trevor Johnson2004-04-083-16/+16
* After patching, remove the carriage-return characters from povchem.cTrevor Johnson2004-04-071-0/+2
* Chase home page.Trevor Johnson2004-04-071-1/+1
* Fix build with gtk 2.4.Adam Weinberger2004-04-051-1/+6
* Chase the glib20 update, and bump all affected ports' PORTREVISIONs.Joe Marcus Clarke2004-04-054-3/+4
* Remove category pkg/COMMENT files in favour of a COMMENT variable in theKris Kennaway2004-04-022-1/+2
* SIZEify (maintainer timeout)Trevor Johnson2004-03-3134-0/+38
* Add SIZE data.Akinori MUSHA2004-03-221-0/+1
* Do not hardcord PICFLAGMaho Nakata2004-03-201-7/+1
* Backout previous change of PICFLAG, sinceMaho Nakata2004-03-191-0/+6
* -fPIC is appropreate on all architectures.Maho Nakata2004-03-191-6/+0
* Add size data, approved by maintainers.Trevor Johnson2004-03-191-0/+1
* 1) Silent version up without changing the version numberMaho Nakata2004-03-183-6/+6
* Add size data.Trevor Johnson2004-03-181-0/+1
* SIZEify.Trevor Johnson2004-03-182-0/+2
* 1) update to 0.9.3Maho Nakata2004-03-175-11/+44
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