aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* - Update to 1.5.3Wen Heping2012-10-083-11/+37
* - Take maintainershipWen Heping2012-10-017-7/+7
* - Reassign to the heap at maintainer's requestThomas Abthorpe2012-10-0120-131/+40
* Add new ports biology/plink [1] and biology/plinkseq [2]:Max Brazhnikov2012-09-279-0/+138
* - update to 1.60Ruslan Makhmatkhanov2012-09-254-133/+140
* Mea culpa, s/Whom/Created by/Alexey Dokuchaev2012-09-231-1/+1
* - Adjust "Created by" tag to include more complete submitter's informationAlexey Dokuchaev2012-09-231-5/+4
* - Reassign to the heap at maintainer's requestThomas Abthorpe2012-09-221-6/+2
* Deprecated a bunch a ports with nor more public distfiles (thanks ehaupt'sBaptiste Daroussin2012-09-211-0/+3
* Mark as broken on sparc64: depends on thread-local storage, which is notMark Linimon2012-09-081-0/+4
* Fix build with clangBaptiste Daroussin2012-08-241-0/+13
* - Submitter is now maintainerMichael Scheidell2012-08-071-1/+1
* - Update to version 6.903Michael Scheidell2012-08-074-44/+119
* Switch from libglut to freeglut and retire libglut. Libglut hasn't beenKoop Mast2012-08-053-3/+4
* Fix typos in COMMENTCarlo Strub2012-07-291-1/+1
* Fix typos in COMMENTCarlo Strub2012-07-252-2/+2
* Fix typos in COMMENTCarlo Strub2012-07-241-1/+1
* Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.Gerald Pfeifer2012-07-221-1/+1
* - Update to 1.23Sunpoet Po-Chuan Hsieh2012-07-202-5/+5
* - Remove SITE_PERL from *_DEPENDSAndrej Zverev2012-06-301-2/+2
* - Remove SITE_PERL from *_DEPENDSAndrej Zverev2012-06-301-39/+39
* - reset MAINTAINERDirk Meyer2012-06-262-2/+2
* s/X11BASE/LOCALBASE/, or equivalent.Doug Barton2012-06-251-1/+1
* - Update to 2.29Sunpoet Po-Chuan Hsieh2012-06-182-4/+3
* - Update to version 2.1.8Sylvio Cesar Teixeira2012-06-186-171/+21
* - Update to version 2.12.3Sylvio Cesar Teixeira2012-06-183-30/+54
* - Update to 0.50Sunpoet Po-Chuan Hsieh2012-06-133-22/+37
* - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} orSteve Wills2012-06-114-4/+4
* - Fix maintainer emailDmitry Marakasov2012-06-071-1/+1
* SeqAn is an open source C++ library of efficient algorithmsDmitry Marakasov2012-06-078-0/+2230
* - Remove SITE_PERL from *_DEPENDSAndrej Zverev2012-06-041-1/+1
* - Update to 0.49Sunpoet Po-Chuan Hsieh2012-06-032-4/+3
* Set maintainership back to ports@Carlo Strub2012-06-032-2/+2
* - update png to 1.5.10Dirk Meyer2012-06-0115-16/+19
* Remove non-serving mirrorCarlo Strub2012-05-201-2/+1
* - Adjust BOINC_* variables to be consistent with new system in boinc-clientPav Lucistnik2012-05-162-9/+9
* - Update to 0.48Sunpoet Po-Chuan Hsieh2012-05-032-5/+5
* - Update to 1.3Frederic Culot2012-04-262-3/+3
* - Update to 2.28Wen Heping2012-04-173-3/+4
* - Update to 1.2Frederic Culot2012-04-163-16/+18
* - Update to 0.47Wen Heping2012-04-112-3/+3
* - Update to 1.0Wen Heping2012-03-223-4/+7
* - Revert ports/165605 as requested by portmgr@Philip M. Gollucci2012-03-141-1/+7
* - Remove ports that only work with < perl 5.12 (devel/p5-B-Size, devel/p5-Dev...Philip M. Gollucci2012-03-091-7/+1
* - Update to 1.59Wen Heping2012-03-063-1070/+1129
* - Update to 0.46Wen Heping2012-03-053-3/+12
* - Update to 0.4.5Wen Heping2012-02-232-3/+3
* - Update MASTER_SITES and WWW: lineMartin Wilke2012-02-203-20/+28
* update to 1.5.0.1.Maho Nakata2012-02-164-40/+76
* - Update to 0.78Sunpoet Po-Chuan Hsieh2012-02-113-44/+58
* - Update to 2.26Sunpoet Po-Chuan Hsieh2012-02-113-5/+7
* - Update to 1.22Sunpoet Po-Chuan Hsieh2012-02-092-3/+3
* - Update to 0.77Wen Heping2012-02-093-5/+8
* - fix build with gcc46Dirk Meyer2012-02-071-7/+4
* - Mark BROKEN on FreeBSD 9.X and up: does not compilePav Lucistnik2012-02-061-1/+7
* - Respect CCMartin Wilke2012-01-281-1/+2
* At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450Eitan Adler2012-01-225-5/+5
* - Update to 3.23Sylvio Cesar Teixeira2012-01-172-3/+3
* Chase pdflib.so version and bump PORTREVISION accordingly.Alex Dupre2012-01-101-2/+2
* - The proper acronym for Apache Software License 2 is really AL2Thomas Abthorpe2012-01-091-1/+1
* - Update to 0.87Wen Heping2011-12-233-4/+6
* - Update to 1.21Sunpoet Po-Chuan Hsieh2011-11-242-4/+5
* - unbreakPietro Cerutti2011-11-172-2/+29
* Does not build on powerpc-9: error in pthreads.Mark Linimon2011-11-101-0/+4
* - Remove WITH_FBSD10_FIX, is no longer neededMartin Wilke2011-11-091-1/+0
* - Mark BROKEN: does not compile with new fltkPav Lucistnik2011-11-051-0/+2
* - Fix fetch and update WWWPav Lucistnik2011-11-052-2/+2
* - Fix build on FreeBSD 10Martin Wilke2011-10-291-0/+1
* - Update to 0.45Sunpoet Po-Chuan Hsieh2011-10-292-3/+3
* The vast majority of pkg-descr files had the following format when theyDoug Barton2011-10-243-10/+1
* - remove maintainer tags from pkg-descrEitan Adler2011-10-2311-27/+0
* - Update to 0.43Sunpoet Po-Chuan Hsieh2011-10-173-3/+7
* - Update to 0.44Wen Heping2011-10-132-4/+4
* - ${FFLAGS} might contain commasPav Lucistnik2011-10-111-1/+1
* - Update to 0.7Wen Heping2011-10-102-3/+3
* - Fix LICENSE (Artistic 1 instead of Artistic 2)Frederic Culot2011-10-071-1/+1
* - Update to 2.25Sunpoet Po-Chuan Hsieh2011-10-033-22/+23
* - Add build depends to silence build warningsSteve Wills2011-09-251-1/+2
* - Fix missing DEPENDS to silence build warningsSteve Wills2011-09-251-1/+2
* - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)Dmitry Marakasov2011-09-245-10/+8
* - Update to 0.6Wen Heping2011-09-222-3/+3
* Change maintainer address to my FreeBSD addressCarlo Strub2011-09-152-2/+2
* - Fix MASTER_SITES and WWW: lineWen Heping2011-08-262-33/+19
* - Add missing BUILD_DEPENDSSteve Wills2011-08-181-1/+2
* Remove USE_GNOME=gnometarget from ports. It has been a empty keyword sinceKoop Mast2011-08-122-2/+0
* - Update to 1.5.1Wen Heping2011-08-113-12/+41
* - Update to 0.40Frederic Culot2011-08-102-3/+6
* Remove WWW entries from unmaintained ports that return 404 or where the domainEmanuel Haupt2011-08-031-2/+0
* Deprecate port with no more public distfilesBaptiste Daroussin2011-08-021-0/+3
* Bye bye abandonwares (part 2)Baptiste Daroussin2011-08-0130-726/+0
* - Update to 0.39Sunpoet Po-Chuan Hsieh2011-08-013-3/+34
* Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,Mark Linimon2011-07-212-2/+2
* - Update to 0.38Sunpoet Po-Chuan Hsieh2011-07-163-50/+64
* - Update to 1.20Sunpoet Po-Chuan Hsieh2011-07-132-73/+71
* - kick MD5Martin Wilke2011-07-021-1/+0
* - Use USERS and GROUPSChris Rees2011-06-282-47/+3
* - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemyNicola Vitale2011-06-251-1/+2
* Switch dependency on povray to povray-meta port.Max Brazhnikov2011-06-211-2/+2
* Another bunch of deprecation: no more public distfiles and/or abandonwareBaptiste Daroussin2011-06-171-0/+3
* Another bunch of deprecation: no more public distfiles and/or abandonwareBaptiste Daroussin2011-06-163-0/+9
* - Update to 0.5Wen Heping2011-06-102-3/+3
* Update to 1.1.04Julien Laffaye2011-06-105-126/+35
* deprecate and set expiration date:Baptiste Daroussin2011-06-091-0/+3
* - Update to 0.4.3Wen Heping2011-06-022-3/+3
* - update to 2.24Baptiste Daroussin2011-06-023-3/+10
* - Update to 1.57Wen Heping2011-05-243-111/+18
* Update to 1.6. Web site has been moved.Maho Nakata2011-05-114-10/+11
* Update math/gsl to 1.15, and adjust PORTREVISIONBrendan Fabeny2011-05-101-1/+2
* - Update to 0.4Wen Heping2011-05-092-3/+3
* update to 1.4.1Maho Nakata2011-05-093-8/+41
* - Update to 2.11Steve Wills2011-05-092-3/+3
* Bump PORTREVISION after open-mofit updateMax Brazhnikov2011-05-024-2/+4
* Fix build with open-motif-2.3.3Max Brazhnikov2011-05-023-7/+72
* - Updated WWW: to a working linkGreg Larkin2011-04-231-14/+17
* Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.Wen Heping2011-04-225-0/+49
* - Update to 0.4.2Wen Heping2011-04-132-3/+3
* Update to GNU make 3.82 after numerous -exp runs.Ade Lovett2011-04-121-0/+11
* - Update to 0.36Wen Heping2011-04-013-4/+14
* - Get Rid MD5 supportMartin Wilke2011-03-1983-110/+0
* - Take maintainershipWen Heping2011-03-141-1/+1
* - Reassign to the heapThomas Abthorpe2011-03-131-1/+1
* - Update to 0.35Wen Heping2011-02-282-3/+4
* - Move over to python2.5 or higherMartin Wilke2011-02-252-2/+2
* - Update to 0.8Wen Heping2011-02-152-4/+3
* - Update to 1.12.5Frederic Culot2011-02-113-4/+4
* - Update to 5.1.09Martin Wilke2011-01-317-470/+508
* - Unbreak the port; I'm not sure how it could possibly work beforePav Lucistnik2011-01-282-12/+3
* - Change depobj for fasta3 to something that does not change on fasta updatesPav Lucistnik2011-01-281-1/+1
* - Update to 36.3.2 to fix distfile fetching on pointyhatBeat Gaetzi2011-01-273-16/+13
* - Fix fetchPav Lucistnik2011-01-251-1/+1
* - Fix pkg-plist, got the wrong version beforePhilip M. Gollucci2010-12-311-0/+9
* - DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.Philip M. Gollucci2010-12-301-1/+0
* - Update to 1.4.1Philip M. Gollucci2010-12-273-149/+143
* - Use canonical format for FreeBSD.org MAINTAINER addressesSunpoet Po-Chuan Hsieh2010-12-262-2/+1
* - Update to 2.18Wen Heping2010-12-232-3/+3
* - Update to 0.34Wen Heping2010-12-232-3/+3
* - Fix fetchWen Heping2010-12-212-2/+3
* - Update to 0.33Wen Heping2010-12-163-4/+4
* - Update to 0.32Philip M. Gollucci2010-12-133-3/+11
* - fix fetch: wget is not required for fetchingPhilip M. Gollucci2010-12-122-6/+0
* Sync to new bsd.autotools.mkAde Lovett2010-12-045-5/+5
* - Update to 0.4.1Wen Heping2010-12-022-4/+3
* Improve port description.Alexey Dokuchaev2010-11-291-7/+15
* - Also remove them from pkg-plist lists not from me that crept inPhilip M. Gollucci2010-11-241-1/+0
* - Update to 0.31Wen Heping2010-11-223-3/+7
* - Update to 2.1Wen Heping2010-11-222-4/+3
* - Update to 0.30Wen Heping2010-11-172-75/+76
* Fix plist.Steven Kreuzer2010-11-171-1/+1
* - Update to 2.15Wen Heping2010-11-163-196/+201
* - Update to 1.5.0Wen Heping2010-11-103-4/+41
* - Update to 0.28Philippe Audeoud2010-11-093-7/+3
* - Unbreak build: CPP is now part of MAKE_ENVPav Lucistnik2010-11-081-1/+1
* - Update to 2.10Wen Heping2010-11-042-7/+6
* - Unbreak by removing some old and adding some new master sitesRene Ladan2010-10-311-5/+4
* - Update to 0.4.0Wen Heping2010-10-262-4/+4
* - Update to 0.26Wen Heping2010-10-253-5/+8
* - Update to 0.22Wen Heping2010-10-223-20/+20
* Update my MAINTAINER address to culot@FreeBSD.org.Frederic Culot2010-10-201-1/+1
* - Update to 2.14Wen Heping2010-10-192-4/+4
* Punt autoconf267->autoconf268Ade Lovett2010-10-161-1/+1
* - Update to 4.2.0Wen Heping2010-10-083-5/+6
* Round one migration of ports from automake{19,110} to automake111Ade Lovett2010-10-062-2/+2
* - Add an additional MASTER_SITESSunpoet Po-Chuan Hsieh2010-10-011-1/+2
* Mark BROKEN: does not fetch.Erwin Lansing2010-09-301-0/+1
* - Update to 2.13Wen Heping2010-09-263-4/+5
* - Update to 0.76Wen Heping2010-09-252-4/+4
* Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,Martin Matuska2010-09-211-1/+2
* Also broken on sparc64 (and, by implication, ia64).Mark Linimon2010-09-171-2/+2
* Update to 1.3r1.3913.Maho Nakata2010-09-174-636/+699
* - Update to 4.1.0Wen Heping2010-09-163-5/+28
* Autotools update. Read ports/UPDATING 20100915 for details.Ade Lovett2010-09-161-1/+2
* - Update to 4.4cWen Heping2010-09-082-4/+4
* - Update to 0.75Wen Heping2010-09-073-6/+12
* - Update to 1.13Wen Heping2010-09-072-4/+4
* - Update MAINTAINER to submitters new mail addressBernhard Froehlich2010-09-041-1/+1
* - Update to 2.10.0Sahil Tandon2010-08-215-29/+13
* - Update USE_PYTHON in Makefile to reflect upstream PythonGreg Larkin2010-08-181-1/+1
* Update to 1.12:Andrej Zverev2010-08-182-5/+5
* - Update to 2.1.5Li-Wen Hsu2010-08-042-7/+12
* Fix typo in maintainer mail addressBaptiste Daroussin2010-08-031-1/+1
* - Update to 1.12.4Baptiste Daroussin2010-08-022-6/+11
* - Update the libmap instructions for amd64/8Pav Lucistnik2010-07-292-4/+14
* - Update to 1.54Wen Heping2010-07-023-49/+146
* - Update to 2.11Wen Heping2010-06-302-4/+4
* - Update to 1.17Wen Heping2010-06-302-4/+4
* - Update to 1.16Wen Heping2010-06-242-4/+4
* - Update to 2.04Wen Heping2010-06-223-7/+6
* BROKEN should not be quoted.Erwin Lansing2010-06-131-1/+1
* - Update to 1.15Wen Heping2010-06-122-5/+4
* Update to 1.10.Anton Berezin2010-06-112-7/+6
* - Update to 1.4.0Philip M. Gollucci2010-06-083-75/+188
* LICENSE GPLv2Dirk Meyer2010-06-062-1/+3
* LICENSE LGPL21Dirk Meyer2010-06-051-0/+2
* - Update to 1.4.1Wen Heping2010-06-013-4/+25
* Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.Ade Lovett2010-05-311-1/+1
* - Update to 3.1.6Sylvio Cesar Teixeira2010-05-313-5/+5
* - drop USE_GNUSTEP_PREFIXDirk Meyer2010-05-304-320/+318
* - Update to 4.0.1Wen Heping2010-05-242-4/+4
* - fix build for gnustep-base 1.21.0Dirk Meyer2010-05-241-2/+3
* - Update to 1.12.2Wen Heping2010-05-213-6/+7
* - Update to 2.09Wen Heping2010-05-182-4/+4
* - Update to 2.0.8Wen Heping2010-05-143-5/+4
* - Update to 2.0.7Wen Heping2010-05-102-5/+5
* - Update to 3.1.4Sylvio Cesar Teixeira2010-05-093-11/+18
* - Update to 1.00Wen Heping2010-05-082-5/+6
* - Removed BROKEN because file fetches and checksums correctlyGreg Larkin2010-04-291-3/+2
* - Update to 2.04Wen Heping2010-04-202-4/+5
* - Update to 4.4aWen Heping2010-04-202-7/+7
* - update to 0.81Dirk Meyer2010-04-143-10/+32
* - Update to 6.2.0Wen Heping2010-04-076-75/+232
* - Update to 2.03Wen Heping2010-04-022-4/+4
* Mark various ports as broken or ignore on powerpc.Mark Linimon2010-04-013-3/+21
* - Update to 2.02Wen Heping2010-03-303-5/+6
* - Bump PORTREVISION to chase the update of math/gslWen Heping2010-03-291-2/+2
* - update to 1.4.1Dirk Meyer2010-03-2818-20/+22
* - Update to 3.1.3Wen Heping2010-03-242-5/+5
* - Chase x11-toolkits/fltk updatePietro Cerutti2010-03-242-5/+5
* - Update to 3.22Sylvio Cesar Teixeira2010-03-222-4/+4
* - Update to 0.3.9Wen Heping2010-03-192-4/+4
* - Update to 2.01Wen Heping2010-03-102-4/+4
* - Update to 0.21Wen Heping2010-03-093-47/+41
* - Update to 0.18Wen Heping2010-03-033-35/+72
* p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XMLWen Heping2010-03-015-0/+42
* - Update to 0.7Wen Heping2010-02-243-9/+8
* - Reset more ports I don't use anymorePhilip M. Gollucci2010-02-111-1/+1
* Update to 3.1.2Edwin Groothuis2010-02-102-4/+4
* - Update to 2.00Wen Heping2010-02-103-5/+5
* - update to jpeg-8Dirk Meyer2010-02-0518-18/+19
* - Update to 0.99Wen Heping2010-02-032-5/+5
* - Update to 3.1.1Martin Wilke2010-02-035-88/+40
* - use $SUB_FILES to dynamically adjust pkg-messagePhilip M. Gollucci2010-01-311-2/+1
* - Remove unneeded dependencies which is in perl-5.8.9 distJun Kuriyama2010-01-294-11/+7
* - actually remove old patchPhilip M. Gollucci2010-01-171-31/+0
* - Fix on amd64Philip M. Gollucci2010-01-174-0/+60
* - Remove unneeded dependencies which is in perl-5.8.9 dist from portsJun Kuriyama2010-01-161-2/+2
* - SUB_FILES += pkg-messagePhilip M. Gollucci2010-01-101-4/+1
* - Update to 1.03Wen Heping2010-01-092-5/+5
* - SBU_FILES += pkg-messagePhilip M. Gollucci2010-01-084-56/+54
* - Update to 1.995Wen Heping2010-01-072-4/+4
* - Update to 1.53Wen Heping2010-01-063-99/+39
* python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)Wen Heping2009-12-295-0/+35
* - Fix fetch errorWen Heping2009-12-271-2/+2
* - Update to 0.3.7Wen Heping2009-12-242-4/+4
* - Update to 7.1.11Martin Wilke2009-12-224-41/+49
* - Update to 0.3.5Wen Heping2009-12-212-4/+4
* For ports maintained by ports@FreeBSD.org, remove names and/orDoug Barton2009-12-2111-22/+0
* - Update to 1.1.4Wen Heping2009-12-182-11/+11
* - Update to 1.4Wen Heping2009-12-173-30/+126
* - Update to 0.3.4Wen Heping2009-12-162-4/+4
* - Turn over a bunch of p5- ports that change infrequently to perl@Philip M. Gollucci2009-12-141-1/+1