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* - Respect PORTDOCS/PORTEXAMPLESPietro Cerutti2008-09-092-188/+186
* Reset sf@slappy.org due to maintainer-timeouts and no response to email.Mark Linimon2008-09-031-1/+1
* - Fix buildPietro Cerutti2008-08-281-2/+2
* - Update to 3.68Pietro Cerutti2008-08-272-6/+5
* Add -lf2c, this is the correct dependency. Bump portrevision.Maho Nakata2008-08-232-0/+9
* Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.Rong-En Fan2008-08-214-5/+0
* Unbreak building for 8-x.Boris Samorodov2008-08-162-4/+114
* - update PORTSCOUTDirk Meyer2008-08-131-1/+3
* - Update to 1.47Martin Wilke2008-08-123-53/+92
* - Update to 2.1.3Philip M. Gollucci2008-08-013-4/+5
* - Remove USE_GCC where it can be satisfied with base compiler on followingPav Lucistnik2008-07-252-2/+0
* - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MA...Pav Lucistnik2008-07-253-3/+5
* - Delete biology/nab port after being marked DEPRECATED for three monthsPav Lucistnik2008-07-2415-1093/+0
* Update my ports to my freebsd addressPhilip M. Gollucci2008-07-232-2/+2
* - respect NOPORTEXAMPLES/NOPORTDOCS and fix plistIon-Mihai Tetcu2008-07-122-14/+15
* - Update to 2.1.2c.Marcelo Araujo2008-07-122-5/+5
* - extened PORTSCOUTDirk Meyer2008-07-091-1/+1
* - Mark BROKEN: missing cpan dependency (interactive loop)Pav Lucistnik2008-07-081-0/+2
* - Bump portrevision after openbabel updateBeech Rintoul2008-07-071-1/+1
* - Update to 1.5.2.Felippe de Meirelles Motta2008-07-074-1355/+1063
* - Update to 1.45Beech Rintoul2008-07-043-26/+79
* - extend PORTSCOUTDirk Meyer2008-06-241-1/+1
* - Fix plist files installation.Felippe de Meirelles Motta2008-06-211-1/+2
* SSAHA is a software tool for very fast matching and alignment of DNAFelippe de Meirelles Motta2008-06-2136-0/+1362
* - Fix fetch, update WWWPav Lucistnik2008-06-192-2/+2
* - Fix build dependsPietro Cerutti2008-06-091-0/+3
* Bump portrevision due to upgrade of devel/gettext.Edwin Groothuis2008-06-0613-11/+13
* - Update to 3.67Pietro Cerutti2008-06-042-12/+7
* - cleanup FreeBSD 5.xDirk Meyer2008-06-021-7/+1
* - Update to 1.09Martin Wilke2008-05-312-4/+4
* Teach the building cluster that these ports are not to be buildEdwin Groothuis2008-05-264-0/+12
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-249-0/+221
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-244-0/+22
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-242-0/+49
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-249-0/+1174
* Update to 1.08Mathieu Arnold2008-05-232-4/+4
* - Update MASTER_SITES and WWW: lineMartin Wilke2008-05-224-61/+46
* - Include some ports in perl5 category.Marcelo Araujo2008-05-191-1/+1
* - Update maintainer's email addressPav Lucistnik2008-05-183-3/+3
* - Try to fix fetchPav Lucistnik2008-05-181-0/+2
* Update to 1.23Erwin Lansing2008-05-152-4/+4
* NJplot is a tree drawing program able to draw any phylogenetic tree expressedPav Lucistnik2008-05-145-0/+145
* MUSCLE is multiple alignment software for protein and nucleotide sequences.Pav Lucistnik2008-05-147-0/+232
* - add PORTSCOUTDirk Meyer2008-05-041-0/+2
* Update to version 34.OKAZAKI Tetsurou2008-05-012-11/+5
* - update to 0.8.2Dirk Meyer2008-04-309-456/+205
* - Update to 2.0.6Martin Wilke2008-04-292-5/+5
* Reset aaron's port maintainerships due to many maintainer-timeouts.Mark Linimon2008-04-291-1/+1
* - Mark BROKEN on -CURRENT: error: 'linkat' redeclared as different kind of sy...Pav Lucistnik2008-04-261-0/+4
* - Remove unneeded dependency from gtk12/gtk20 [1]Martin Wilke2008-04-2019-50/+43
* implement @dirrmtry macro for the pkg-plistEdwin Groothuis2008-04-191-1/+1
* - Update mastersite.Jean Milanez Melo2008-04-181-1/+2
* - Replace SF with second working master sitePav Lucistnik2008-04-181-1/+1
* - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_C...Marcelo Araujo2008-04-176-10/+6
* - It seems that upstream removes their distfiles from sourceforge, so addRong-En Fan2008-04-171-1/+2
* - Update to 5.0.0Rong-En Fan2008-04-1317-6851/+707
* - Sort pkg-plist before updating to 5.0.0Rong-En Fan2008-04-131-888/+888
* Change maintainers e-mail address.Emanuel Haupt2008-04-111-2/+2
* - Update to 35.3.6Cheng-Lung Sung2008-04-102-5/+5
* - Chase the gsl shared lib bump.Philippe Audeoud2008-04-081-2/+2
* - Update maintainer's emailRong-En Fan2008-04-061-3/+5
* MAPMAKER/EXP is a linkage analysis package designed to help construct primaryRong-En Fan2008-04-0628-0/+1101
* - Update to 5.68Rong-En Fan2008-04-053-10/+10
* - Update to 1.1.3Pav Lucistnik2008-04-053-185/+203
* - Chase fasta3 updatePav Lucistnik2008-04-021-1/+1
* - Update to 35.3.5Rong-En Fan2008-03-303-53/+49
* - Fix build with GCC 4.2Pietro Cerutti2008-03-292-5/+18
* - Add missing dependensMartin Wilke2008-03-271-1/+3
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGMartin Wilke2008-03-261-2/+1
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGMartin Wilke2008-03-241-2/+2
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGMartin Wilke2008-03-241-2/+1
* - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORGMartin Wilke2008-03-243-6/+3
* - Remove USE_X_PREFIXBeech Rintoul2008-03-222-4/+2
* - Update to 2.0.5Philippe Audeoud2008-03-191-5/+10
* - Update to version 2.0.5Philippe Audeoud2008-03-192-21/+10
* - Update to 1.07Martin Wilke2008-03-122-4/+4
* Fix pkg-plistMaho Nakata2008-03-101-0/+142
* Update to 1.0r2.Maho Nakata2008-03-076-955/+636
* - File was rerolled for a small bugfix.Martin Wilke2008-02-273-3/+16
* - Restore clustalw symlink, other ports rely on itPav Lucistnik2008-02-271-1/+5
* - Update to 2.4.3Martin Wilke2008-02-262-4/+4
* - Update to 2.0.3Pav Lucistnik2008-02-266-61/+8
* Umark BROKEN, stale distfile removed from ftp-master.Erwin Lansing2008-01-271-2/+0
* - Update to 2.4.2 (fix fetch problems)Martin Wilke2008-01-262-4/+4
* Mark BROKEN: does not fetchErwin Lansing2008-01-261-0/+2
* - Update to 2.4.1Martin Wilke2008-01-214-15/+46
* Fix build on !i386Tilman Keskinoz2008-01-041-9/+5
* - Update to 2.0Pav Lucistnik2007-12-1615-406/+60
* MrBayes is a program for the Bayesian estimation of phylogeny.Martin Wilke2007-12-155-0/+60
* MUMmer is a modular system for the rapid whole genome alignment of finishedMartin Wilke2007-12-155-0/+79
* - Mark BROKEN outside i386: does not compilePav Lucistnik2007-12-051-0/+4
* - Allow build with AMD64Martin Wilke2007-10-292-2/+5
* - Update to 1.1.0Cheng-Lung Sung2007-10-243-74/+86
* - Update to 2.1.2bMartin Wilke2007-10-245-37/+20
* Migration from bison 1.x to 2.xAde Lovett2007-10-171-1/+2
* - Update to 2.1Martin Wilke2007-10-087-18/+196
* - Sort category MakefilesAndrew Pantyukhin2007-10-061-2/+2
* - Fix typo in WWWPav Lucistnik2007-10-041-1/+1
* Remove always-false/true conditions based on OSVERSION 500000Edwin Groothuis2007-10-041-1/+1
* Mark as broken on gcc4.2.Mark Linimon2007-10-021-1/+7
* Mark as broken with gcc4.2.Mark Linimon2007-10-021-0/+4
* biology/linux-foldingathome needs to run as root?Edwin Groothuis2007-09-233-6/+8
* Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.Mark Linimon2007-09-087-39/+5
* - Update to 1.06Martin Wilke2007-09-072-12/+5
* - Update to version 2.3Ion-Mihai Tetcu2007-09-034-46/+57
* - Chase x11-toolkits/pmw renamed to x11-toolkits/py-PmwRong-En Fan2007-09-021-2/+2
* Replace IGNORE with ONLY_FOR_ARCHS for this binary port.Kris Kennaway2007-08-091-9/+2
* Fix pkg-plistLars Engels2007-08-031-0/+1
* Update to 2.0.10Lars Engels2007-08-014-22/+22
* - cleanup after gnustep-make-2.0.1Dirk Meyer2007-07-231-1/+0
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-141-7/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-121-4/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-122-9/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-121-5/+1
* - Runs on 7.0-CURRENT with compat6xPav Lucistnik2007-07-081-0/+4
* - Update to version 9Rong-En Fan2007-07-083-1313/+1505
* dyeske at yahoo dot com -> dyeske at gmail dot comEdwin Groothuis2007-07-064-6/+6
* chase math/gsl lib versionYing-Chieh Liao2007-06-291-2/+2
* Bump to v0.16.Aaron Dalton2007-06-203-6/+53
* - Fix the build with GCC 4.2Alexey Dokuchaev2007-06-192-7/+32
* - Fix typos.Martin Wilke2007-05-311-3/+3
* - Update to 1.43Martin Wilke2007-05-304-92/+167
* BROKEN: UnfetchableKris Kennaway2007-05-271-0/+2
* BROKEN with gcc 4.2Kris Kennaway2007-05-271-1/+7
* - update for gnustep-make-2.0.0Dirk Meyer2007-05-252-71/+79
* - update for gnustep-make-2.0.0Dirk Meyer2007-05-251-1/+1
* swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from da...Edwin Groothuis2007-05-251-4/+2
* BROKEN: UnfetchableKris Kennaway2007-05-251-0/+2
* - Chase openbabel updatePav Lucistnik2007-05-251-2/+2
* - Welcome X.org 7.2 \o/.Florent Thoumie2007-05-2035-20/+40
* [patch] cleanup non-supported FreeBSD versionsEdwin Groothuis2007-05-021-7/+2
* [patch] cleanup non-supported FreeBSD versionsEdwin Groothuis2007-05-021-7/+1
* [patch] cleanup non-supported FreeBSD versionsEdwin Groothuis2007-05-021-6/+2
* [patch] cleanup non-supported FreeBSD versionsEdwin Groothuis2007-05-021-7/+1
* Use my @FreeBSD.org address.Tong LIU2007-04-301-1/+1
* - Update to 4.5Cheng-Lung Sung2007-04-243-14/+13
* - UnbreakMartin Wilke2007-04-211-3/+3
* BROKEN: UnfetchableKris Kennaway2007-04-201-0/+2
* [patch] cleanup non-supported FreeBSD versionsEdwin Groothuis2007-04-173-41/+1
* Remove always-true condition due to OSVERSIONEdwin Groothuis2007-04-161-1/+1
* - Remove unreachable OSVERSION code.Edwin Groothuis2007-04-161-13/+9
* - Fix after objformat removalPav Lucistnik2007-03-291-0/+3
* - Update to 1.5-beta2Martin Wilke2007-03-273-13/+14
* - MASTER_SITE is back, remove BROKENGabor Kovesdan2007-03-171-2/+0
* Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response toMark Linimon2007-03-141-1/+1
* Reset dbader@eece.unm.edu due to maintainer-timeouts.Mark Linimon2007-03-111-1/+1
* Reset dbader@eece.unm.edu due to maintainer-timeout. While here, fix fetch.Mark Linimon2007-03-111-2/+2
* Reset chuynh@biolateral.com.au: address bounces.Mark Linimon2007-03-112-2/+2
* - Update to 4.96Martin Wilke2007-03-093-10/+143
* - Update to 34.26.2Martin Wilke2007-03-092-8/+6
* - Release distfile was renamed.Martin Wilke2007-03-082-5/+5
* BROKEN: UnfetchableKris Kennaway2007-02-271-0/+2
* - mark ignore on FreeBSD 5.xDirk Meyer2007-02-191-1/+7
* Schedule these broken ports for removal on 2007-04-10 if they are stillKris Kennaway2007-02-111-0/+2
* Update to 0.99rc6.Maho Nakata2007-02-092-5/+5
* BROKEN: Does not buildKris Kennaway2007-02-051-0/+2
* Use libtool port instead of included version to avoid objformat a.out botchKris Kennaway2007-02-011-0/+1
* - add category gnustepDirk Meyer2007-02-012-2/+2
* Build fix.Maho Nakata2007-01-291-1/+2
* Update to 3.66Ion-Mihai Tetcu2007-01-282-4/+4
* Fix master sites, un-deprecate and update biology/recombine to 1.41.Vasil Dimov2007-01-254-86/+19
* Remove expired leaf port:Vasil Dimov2007-01-256-78/+0
* Get rid of biology/coalesce dependency, it is deprecated and will be removedVasil Dimov2007-01-251-2/+2
* Fix master site and un-deprecateVasil Dimov2007-01-251-4/+1
* - Fix typoMartin Wilke2007-01-231-1/+1
* - Project moves to a new home. Change MASTER_SITES and WWWRong-En Fan2007-01-232-2/+2
* Fix build.Maho Nakata2007-01-191-1/+1
* Forgot to commit a patch. Fixes build.Maho Nakata2007-01-191-0/+20
* * Migrate to gfortran.Maho Nakata2007-01-172-13/+11
* . change dependencies: shells/bash2 -> shells/bash;Boris Samorodov2007-01-171-1/+2
* * Migrate to gfortran.Maho Nakata2007-01-161-5/+4
* - update to use new bsd.gnustep.mkDirk Meyer2007-01-131-4/+3
* * Migrate to gfortran.Maho Nakata2007-01-122-2/+7
* Using gfortran42 only. not using gcc42.Maho Nakata2007-01-121-3/+5
* Using only gfortran42. not gcc42.Maho Nakata2007-01-122-6/+10
* * Add dummy knob WANT_FORTRAN for future gfortranMaho Nakata2007-01-092-127/+147
* migrated to gfortran.Maho Nakata2007-01-091-0/+3
* Migrated to gfortran.Maho Nakata2007-01-093-6/+13
* The BioCocoa framework provides developers with the opportunity to addDirk Meyer2006-12-305-0/+45
* - Update to 1.0.1Martin Wilke2006-12-303-97/+98
* Update to v0.15Aaron Dalton2006-12-283-40/+40
* Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no responseMark Linimon2006-12-265-5/+5
* - Update to 5.1.2Martin Wilke2006-12-2411-236/+308
* - Update to 1.03Rong-En Fan2006-12-193-105/+42
* Reset dbader@ece.unm.edu due to timeouts and no response to email.Mark Linimon2006-12-132-2/+2
* Reset whitekid@gmail.com after timeouts and no response to email.Mark Linimon2006-12-131-1/+1
* - Update to 2.1.3Gabor Kovesdan2006-12-104-33/+19
* - DeprecateGabor Kovesdan2006-12-103-0/+9
* - Local/Tools/Resources now globalDirk Meyer2006-12-091-1/+0
* - Respect X11BASERong-En Fan2006-12-091-0/+5
* - Update to 0.14Frank J. Laszlo2006-12-074-56/+48
* - Mark broken on amd64 < 6. We got followingRong-En Fan2006-12-041-0/+4
* Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update.Dmitry Sivachenko2006-12-031-1/+1
* - Respect X11BASERong-En Fan2006-12-031-1/+1
* - Use features of bsd.wx.mk, especially USE_WXPav Lucistnik2006-12-011-4/+2
* - Respect X11BASEMartin Wilke2006-11-281-2/+2
* - Update to 1.91Rong-En Fan2006-11-273-38/+5
* - Upgrade to the latest beta and unbreak;Thierry Thomas2006-11-224-230/+274
* - cleanup patchesDirk Meyer2006-11-131-3/+0
* - fix build on non i386 archsDirk Meyer2006-11-101-2/+2
* Adun is a new extendible molecular simulation program that alsoDirk Meyer2006-11-1010-0/+607
* - Update to 1.42Martin Wilke2006-10-313-121/+90
* - Update to 34.t26.b3Martin Wilke2006-10-313-4/+7
* Distfile now checksums successfully.Sam Lawrance2006-10-151-4/+0
* Chase the GNOME X11BASE to LOCALBASE move, and fix the build with theJoe Marcus Clarke2006-10-142-5/+7
* - Add hmmer 5.09 applicationPav Lucistnik2006-10-104-10/+38
* Chase pdf library and bump PORTREVISION.Alex Dupre2006-10-091-1/+2
* - Allow wxWidgets 2.6 alongside 2.4, this port works with bothPav Lucistnik2006-10-091-4/+3
* - Update to 0.98dCheng-Lung Sung2006-10-062-4/+4
* Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNACheng-Lung Sung2006-09-298-0/+105
* Unbreak: molden has been updated on Aug 17, with the same DISTNAME.Thierry Thomas2006-09-174-23/+35
* Fix build on amd64Maho Nakata2006-09-172-4/+4
* BROKEN on amd64 and ia64: Does not buildKris Kennaway2006-09-171-0/+4
* BROKEN: Size mismatch. Since this is unmaintained, deprecate and scheduleKris Kennaway2006-09-041-0/+4
* NO_CDROM and NO_PACKAGE are not appropriate hereKris Kennaway2006-09-031-3/+1
* Schedule these broken ports for termination on 2006-12-01Kris Kennaway2006-09-032-0/+4
* Folding@Home is a distributed computing project -- people from through out thePav Lucistnik2006-08-295-0/+61
* - s,INSTALLS_SHLIB,USE_LDCONFIG,gCheng-Lung Sung2006-08-141-1/+1
* Mark as broken for i386 4.xEdwin Groothuis2006-08-111-1/+7
* Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master.Erwin Lansing2006-08-041-2/+0
* Mark BROKEN: checksum mismatchErwin Lansing2006-08-041-0/+2
* Mark broken due to checksum mismatchErwin Lansing2006-08-041-0/+2
* - Update to 5.10Pav Lucistnik2006-07-182-8/+8
* - Fix pkg-plist [1]Rong-En Fan2006-07-102-12/+19
* - Update to 2.4.3Rong-En Fan2006-07-088-234/+147
* - Use the correct MASTER_SITE_SUBDIR, make it fetchableRong-En Fan2006-07-041-1/+1
* Mark as BROKEN on sparc64 due to internal compiler error.Mark Linimon2006-07-041-1/+7
* Update to 1.10 (maintained by others) and unbreak.Maho Nakata2006-07-0311-268/+50
* o Update to 0.99rc1Maho Nakata2006-07-015-39/+203
* - Provide SSE optimized application as an optionPav Lucistnik2006-06-252-1/+12
* - Instruct amd64 users to libmap libpthread.so.2 to libc_r.so.6Pav Lucistnik2006-06-232-3/+15
* SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculatedPav Lucistnik2006-06-207-0/+110
* Re-add CONFIGURE_TARGET and fix libm detection.Thierry Thomas2006-06-191-1/+5
* - Upgrade to to 1.9.9 and unbreak;Thierry Thomas2006-06-184-146/+134
* USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more thanErwin Lansing2006-06-111-1/+0
* - Update PORTREVISION to match latest release (see main web site)Pav Lucistnik2006-06-113-8/+27
* - Update to 34.t25.d9Pav Lucistnik2006-06-102-5/+5
* Update biology/ncbi-toolkit to the latest release.Ion-Mihai Tetcu2006-06-063-5/+11
* - Add MASTER_SITEErwin Lansing2006-06-062-30/+31
* - Update to 34.t25.d8 [1]Erwin Lansing2006-06-062-5/+5
* - update to 34.t25.d7Sergey Matveychuk2006-05-253-77/+7
* BROKEN: UnfetchableKris Kennaway2006-05-221-0/+2
* - Update to 3.15Sergey Matveychuk2006-05-212-4/+4
* - Updated from 0.07 to 0.12Aaron Dalton2006-05-203-12/+25
* Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.Aaron Dalton2006-05-145-0/+110
* - Update to 34.t25.d6Sergey Matveychuk2006-05-084-38/+80
* Update to 21.u1.d1 (fixes fetch).Sam Lawrance2006-05-075-27/+18
* - Satisfy portlintSergey Matveychuk2006-05-071-4/+3
* Add protomol 2.0.3, OO, component based, framework for molecularEmanuel Haupt2006-05-065-0/+201
* Remove USE_REINPLACE from all categories starting with BEdwin Groothuis2006-05-0421-22/+0
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