| Commit message (Collapse) | Author | Age | Files | Lines |
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PR: ports/76856
Submitted by: Shin'ya Murakami <murakami (at) ahs.scitec.kobe-u.ac.jp>
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science/cdcl-gtk -> delete
science/ruby-dcl -> update to 1.5 and use gtk by default
science/ruby-dcl-gtk -> delete
science/ruby-gphys -> update to 0.3.5 and fix dependency
science/gave -> update to 1.1.3 and fix dependency
PR: ports/76853
Submitted by: maintainer
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According to Hiroki Sato:
"In teTeX 3.0, pdfetex is used for a DVI output, so the texinfo.tex
always detects the PDF output feature. Although there are several means
to fix this problem, I think disabling such detection should be simple
and enough."
Reported by: kris via pointyhat
Obtained from: hrs
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PR: ports/77731
Submitted by: Bjorn Konig <bkoenig@cs.tu-berlin.de> (maintainer)
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PR: ports/77695
Submitted by: Sam Lawrance <boris at brooknet.com.au>
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McStas is an ongoing project to create a general tool for simulating neutron
scattering instruments. The project is conducted at Risoe National Laboratory
in cooperation with the ILL.
McStas is based on a compiler that reads a high-level specification language
defining the instrument to be simulated and produces C code that performs the
Monte Carlo Simulation.
WWW: http://neutron.risoe.dk/
PR: ports/66031
Submitted by: Joerg Pulz <Joerg.Pulz@frm2.tum.de>
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PR: ports/77586
Submitted by: Rong-En Fan <rafan@infor.org> (maintainer)
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PR: ports/77523
Submitted by: Quincey Koziol <koziol@ncsa.uiuc.edu> (maintainer)
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Requested by: old maintainer
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PR: ports/77376
Submitted by: Stefan 'Steve' Tell <stell@zeus.crashmail.de> (maintainer)
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Repocopy by: marcus
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Submitted by: kris via pointyhat
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PR: ports/77070
Submitted by: Brad Huntting <huntting@glarp.com> (maintainer)
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Submitted by: Martin Kroeker <martin@ruby.chemie.uni-freiburg.de>
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PR: ports/77139
Submitted by: Ports Fury
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- Add 'java' category
PR: 77040 [1]
Submitted by: maintainer [1]
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Submitted by: kris via pointyhat
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invalidating the packing list on pointyhat. Someone with more Perl
module fu could probably do this a lot easier.
Packing list problem reported by: kris
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Submitted by: Christopher Illies <christopher.illies@web.de>,
MartinKroeker <martin@ruby.chemie.uni-freiburg.de>
(original author) and maho
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PR: ports/75342
Submitted by: maintainer.
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- Fix plist nit
PR: ports/76824 [1]
Submitted by: Johan van Selst <johans@stack.nl>
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Submitted by: linimon
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Submitted by: Christopher Illies <christopher.illies@web.de>
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- Shared libraries moved from ${PREFIX}/lib/${PORTNAME} to ${PREFIX}/lib
PR: ports/76717
Submitted by: Bjorn Konig <bkoenig@cs.tu-berlin.de> (maintainer)
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PR: 71221
Submitted by: Leland Wang
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Reported by: kris
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DeViSoRGrid application is part of that software family and is primarily used
for the following tasks, so far in 2D only:
* Geometry generation
* Manual coarse mesh generation
* Grid visualisation at all levels
All of this can be done in a very confortable manner using a simple point and
click interface like in common vector-based image processing software. Both the
reliable FEAT file format and the new FEAST format with integrated parallelism
are supported.
WWW: http://www.featflow.de/
PR: 75973
Submitted by: Pedro F. Giffuni <giffunip@asme.org>
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Submitted by: kris via pointyhat
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Submitted by: kris via pointyhat
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The Unidata units library, udunits, supports conversion of unit
specifications between formatted and binary forms, arithmetic
manipulation of unit specifications, and conversion of values
between compatible scales of measurement.
WWW: http://www.unidata.ucar.edu/packages/udunits/
Obtained from: Gentoo (partially)
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PR: ports/75954
Submitted by: Ports Fury
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Reported by: pointyhat
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PR: ports/75631
Submitted by: Ports Fury
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Configuration.
PR: 75529
Submitted by: Pedro F. Giffuni
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evolution simulation. I'm a main developer of this framework and I will also
keep the FreeBSD port up-to-date, as I'm using FreeBSD as my primary platform.
See http://www.g-system.at for details.
PR: ports/75466
Submitted by: Raphael Langerhorst <raphael-langerhorst@gmx.at>
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PR: 70816
Submitted by: David Syphers.
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deskutils/drivel is the only port that has pkg-plist change, so bump the
PORTREVISION. The rest else should be no function change, but just remove the
patches to allow gnomehack takes care of it. Keep in mind, I only touch those
ports that already have gnomehack.
Reviewed by: pav and marcus
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Requested by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
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- fix pkg-plist, bump PORTREVISION
Poked by pointyhat via Kris.
PR: ports/75248
Submitted by: maintainer
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PR: ports/74973
Submitted by: maintainer
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PR: ports/73981
Submitted by: Rong-En Fan <rafan(at)infor.org>
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- Install tools
- Make python interface to a slave port
- Respect to CXX and CFLAGS in python/Makefile
- Pass a maintainership to the submitter
PR: ports/73981
Submitted by: Rong-En Fan <rafan(at)infor.org>
Approved by: former maintainer
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- Define USE_LIBTOOL_VER;
- Bump PORTREVISION.
PR: ports/74828
Submitted by: maintainer.
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create models directly in C++ language with the use of predefined simulation
tools from the library. SIMLIB allows object-oriented description of models
based on simulation abstractions. Current version allows a description of
continuous, discrete, combined, 2D/3D vector, and fuzzy models.
Requested by: Roman Divacky
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Reported by: Kris via pointyhat.
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Approved by: bland, kwm, marcus and pav
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PR: 74013
Submitted by: Jie Gao <gaoj at cpsc.ucalgary.ca>
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- Use INSTALLS_OMF knob
PR: ports/74168
Submitted by: Stefan 'Steve' Tell <stell@zeus.crashmail.de> (maintainer)
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simulation environment with strong GUI support and an embeddable simulation
kernel. Its primary application area is the simulation of communication
networks and because of its generic and flexible architecture, it has been
successfully used in other areas like the simulation of IT systems, queueing
networks, hardware architectures and business processes as well.
PR: ports/73920
Submitted by: Bjoern Koenig <bkoenig@cs.tu-berlin.de>
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finite elements.
Suggested by: Pedro F. Giffuni.
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PR: ports/73674
Submitted by: new maintainer
Approved by: old maintainer
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big upgrade.
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PR: ports/73493
Submitted by: Andreas Fehlner <fehlner@gmx.de> (maintainer)
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.ifndef WITH_FLOAT
CONFIGURE_ARGS+= --disable-float
Submitted by: Stephen Montgomery-Smith <stephen at math.missouri.edu>
Reported by: kris via pointyhat and Bruno Afonso <brunomiguel at dequim.ist.utl.pt>
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Reported by: pointyhat via kris
Forgotten by: pav
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PR: ports/72834
Submitted by: Andreas Fehlner <fehlner@gmx.de> (maintainer)
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GROMACS is a versatile package to perform molecular dynamics,
i.e. simulate the Newtonian equations of motion for systems
with hundreds to millions of particles, and also the World's
fastest Molecular Dynamics under GPL.
PR: 71211
Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
Reviewed by: Bruno Afonso <brunomiguel@dequim.ist.utl.pt>
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PR: ports/71275
Submitted by: Shin'ya Murakami <murakami at ahs dot scitec dot kobe-u dot ac dot jp> (maintainer)
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Approved by: portmgr
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Approved by: portmgr (self)
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Approved by: portmgr (self)
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Reported by: mi
Approved by: portmgr (krion)
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PR: ports/68467
Submitted by: Shin'ya Murakami
Approved by: maintainer
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PR: ports/71052
Submitted by: Stephen Montgomery-Smith (maintainer)
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PR: ports/71302
Submitted by: Ports Fury
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(2.2.2 supports gcc-3.4.x)
Submitted by: pointyhat
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Submitted by: pointyhat
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Scientific tools for Python
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PR: 70422
Submitted by: Andreas Fehlner <fehlner@gmx.de>
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analyzing large biomolecular systems using 3-D graphics and built-in scripting.
PR: ports/70509
Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
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PR: ports/70547
Submitted by: Ports Fury
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Noticed by: portlint
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Passed by: portlint
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from FreeBSD 5-current's /usr/include/c++/3.3/
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and electronic structure of systems.
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PR: ports/70413
Submitted by: Ports Fury
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Reminded by: cluster via kris
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PR: ports/68864
Submitted by: Ports Fury
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the libtoolX ports instead of the one included with each port. Ports that
set USE_LIBTOOL_VER=X will now use the ports version of libtool instead of
the included version. To restore previous behavior, use the new macro,
USE_INC_LIBTOOL_VER. Both macros accept the same argument: a libtool version.
For example, to use the ports version of libtool-1.5, add the following to
your Makefile:
USE_LIBTOOL_VER= 15
To use the included version of libtool with extra hacks provided by
libtool-1.5, add the following to your Makefile:
USE_INC_LIBTOOL_VER= 15
With this change, ports that had to add additional libtool hacks to prevent
.la files from being installed or to fix certain threading issues can now
delete those hacks (after appropriate testing, of course).
PR: 63944
Based on work by:eik and marcus
Approved by: ade (autotools maintainer)
Tested by: kris on pointyhat
Bound to be hidden problems: You bet
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PR: ports/68762
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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more often in other ports to signify the same thing.
PR: ports/68544
Approved by: "Shin'ya Murakami" <murakami at ahs dot scitec dot kobe-u dot ac dot jp> (maintainer)
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Submitted by: das
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libtool14 (13/15).
PR: 67768
Submitted by: ade
Approved by: 4-exp bento runs (thanks, kris!)
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PR: 68466
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
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Made possible by: marcus (installing XDG entries to ${X11BASE})
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PR: ports/67854
Submitted by: Andreas Fehlner <fehlner@gmx.de> (maintainer)
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PR: ports/66635
Submitted by: Roman Neuhauser
Approved by: maintainer
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PR: ports/66636
Submitted by: Roman Neuhauser <neuhauser@chello.cz>
Approved by: maintainer timeout (2 weeks)
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Submitted by: maintainer
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PR: ports/67519
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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PR: ports/67391
Submitted by: Roman Neuhauser <neuhauser@chello.cz>
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PR: ports/67029
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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PR: ports/66411
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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PR: 65409
Submitted by: trevor
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kst is a program for looking at data streams. It can plot:
- x-y plots
- power spectra
- histograms
- equations (including equations of data streams).
- data in files which are being updated as data is being logged,
in which case it can act as a plotter for a chart recorder.
- much more
You can use the mouse to rapidly zoom into interesting parts of the plots.
In addition to a complete GUI, kst has a convenient command line interface
for rapid access to plotting data in files. kst can read data from stdin.
It provides a DCOP interface for remote manipulation, and supports several
file formats in use in scientific projects around the world.
WWW: http://omega.astro.utoronto.ca/kst/
WWW: http://extragear.kde.org/apps/kst.php
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PR: 65748
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
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PR: ports/65743
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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Approved by: mat (mentor)
Pointy hat: myself.
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category makefile.
Submitted by: Matthew Seaman <m.seaman@infracaninophile.co.uk>
PR: 59651
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Approved by: portmgr
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drastically, so I'll wait for next update with different version
number. place old distfile at freebsd.org (this program is gpl'ed)
for a while.
Submitted by: kris via bento
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same binaries.
PR: ports/64646, ports/64647
Submitted by: Kay Lehmann <kay_lehmann@web.de>
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PR: 57860
Submitted by: Mykola Khotyaintsev <ko@nest.irfu.se>
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PR: ports/64507
Submitted by: Ports Fury
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based upon the DFT++ algebraic framework introduced in Computer
Physics Communications 128, 1-45 (June 2000).
This framework allows us to transparently separate the computational
guts (cache optimization, parallelization, etc.) from the introduction
of new representations (plane waves, wavelets) and new
physics (new density functionals, linear response theory,
dielectric solutions).
The software is fully cache and register optimized,
and runs in serial, threaded, MPI and mixed threaded-MPI
parallel environments.
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2) add note for citation in pkg-message
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high-accuracy calculations of properties of small to medium-sized molecules.
The package's current capabilities include a variety of Hartree-Fock,
coupled cluster, complete-active-space self-consistent-field,
and multi-reference configuration interaction models.
Molecular point-group symmetry is utilized throughout to maximize efficiency.
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Submitted by: trevor
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PR: ports/64322
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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on sdl12-1.2.5
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PR: ports/64243
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
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PR: ports/64249
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
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quantities for Ruby.
PR: ports/64248
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
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PR: ports/64245
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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- Fix cdcl-gtk package
PR: ports/64241
Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
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Begin autotools sanitization sequence by requiring ports to explicitly
specify which version of {libtool,autoconf,automake} they need, erasing
the concept of a "system default".
For ports-in-waiting:
USE_LIBTOOL=YES -> USE_LIBTOOL_VER=13
USE_AUTOCONF=YES -> USE_AUTOCONF_VER=213
USE_AUTOMAKE=YES -> USE_AUTOMAKE_VER=14
Ports attempting to use the old style system after June 1st 2004 will be
sorely disappointed.
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1) reduce optimization level and remove
inappropreate optimization flags
2) use autoconf 257
3) remove lapack dependency
4) fix pkg-plist
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PR: ports/63929
Submitted by: Quincey Koziol <koziol@ncsa.uiuc.edu> (maintainer)
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PR: 63730
Submitted by: Mark Linimon <linimon@FreeBSD.org>
Suggestion by: Masafumi Otsune <info@otsune.com>
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2) sorry I didn't mention your PR
PR: 63366
Submitted by: Vladimir I. Chukharev <chu@gpi.ru>
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PR: ports/63755
Submitted by: Ports Fury
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PR: ports/63756
Submitted by: Ports Fury
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Reported by: bento via kris
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Add ruby-dcl-gtk, a slave port for ruby-dcl with gtk patches.
PR: ports/62873, ports/62874
Submitted by: <murashin@edamame.summing.com>
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Submitted by: kris via bento
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PR: ports/62872
Submitted by: Shin'ya Murakami <murashin@edamame.summing.com>
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PR: ports/62871
Submitted by: Shin'ya Murakami <murashin@edamame.summing.com>
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- Update to 1.6.2
- Pass maintainership to submitter
PR: ports/63252
Submitted by: Quincey Koziol <koziol@ncsa.uiuc.edu>
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PR: ports/63186
Submitted by: Andreas Fehlner <fehlner@gmx.de> (maintainer)
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PR: ports/62803
Submitted by: Shin'ya Murakami <murashin@edamame.summing.com>
Add build time dependency to ruby-narray.
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PR: ports/62431
Submitted by: Ports Fury
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(Part 1)
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is an open source genealogy program. It is written in Python, using the
GTK/GNOME interface.
WWW: http://gramps.sourceforge.net
PR: ports/62171
Submitted by: Andreas Fehlner <fehlner@gmx.de>
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PR: ports/61958
Submitted by: Ports Fury
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PR: 60937
Submitted by: Ports Fury
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Make science/mpb has been pretty much useless because it wasn't
correctly linked with hdf5 as it appears in the Makefile. Now this
is properly done by linking pthread lib too, which is required by
hdf5. Also, correctly link with ATLAS version of LAPACK.
PR: ports/58337
Submitted by: AMAKAWA Shuhei <sa264@cam.ac.uk>
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PR: ports/59613
Submitted by: Ports Fury
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PR: 59574
Submitted by: maintainer
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Approved by: adamw (mentor)
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PR: 58335
Submitted by: AMAKAWA Shuhei <sa264@cam.ac.uk>
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Submitted by: bento
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* Printing code rewritten and now complete
* Charges inside fragments enhanced
* Added user interface for the Bonobo control
* Some code cleaning
* Some bugs fixed
PR: 59066
Submitted by: maintainer
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PR: 58178
Submitted by: Pedro F. Giffuni <giffunip@yahoo.com>
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PR: 58823
Submtited by: maintainer
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PR: 58166
Submitted by: Cheng-Lung Sung <clsung@dragon2.net>
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A real 3-D molecule viewer
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of each port on bento and for recent fixes. Unfortunately at some point I
got confused and switched to the wrong list :-) As a result I picked up a
number of ports that were fixed a while ago. Sorry for the false alarm,
maintainers.
Pointy hat to: kris
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Configure/build tested on: -stable, -current
Notice from: kris via dosirak.kr
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- Do not create useless empty directory
PR: 57835
Submitted by: Ports Fury
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Submitted by: will
Reviewed by: Jonathan Drews <j.e.drews@att.net>
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chemtool-devel is now real developer version of chemtool.
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Many thanks to: Dr. Martin Kroeker <martin@ruby.chemie.uni-freiburg.de>
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b) bump portrevision
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PR: ports/56970
Submitted by: Jean-Yves Lefort <jylefort@brutele.be>
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Submitted by: Oleg Karachevtsev <ok@etrust.ru>
PR: 56998
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The Acoustic ToolBox includes four acoustic models:
BELLHOP: A beam/ray trace code
KRAKEN: A normal mode code
SCOOTER: A finite element FFP code
SPARC: A time domain FFP code
A common input structure has been used throughout so that
only minor modifications are needed to switch from one
program to another.
All the models produce shade files which can be processed
using a common set of plotting routines to plot transmission
loss vs. range or vs. range and depth. These plotting
routines are contained in the GLOBAL directory.
PR: ports/42378
Submitted by: Heiner Strauss <heiner@bilch.com>
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Reported by: freshports and Dan Langille
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2) add EMF support (not work yet)
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resolve conflitcs with bsd.openssl.mk
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Submitted by: bento
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PR: 56102
Submitted by: maintainer
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A did some minor cleanup of the port, hopefully this will
work on gcc-3.3. I suggest this port is moved to the science
category, along with freefem and femlab.
PR: ports/54964
Submitted by: Pedro F. Giffuni <giffunip@yahoo.com>
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Submitted by: kris via bento
Simon Barner <barner@in.tum.de>
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- Add missing x11-toolkits/lesstif dependency.
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Submitted by: kris via bento
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Submitted by: Simon Barner <barner@in.tum.de>
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Submitted by: kris via bento
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For unbreak:
a) location of .include "${.CURDIR}/../mpqc/Makefile"
is just after the BUILD_DEPENDS to avoid override.
For clean-ups:
1) ${F77}->${FC}
2) Use ${LOCALBASE} for CONFIGURE_ARGS for mpqc-mpich
3) ${MASTERDIR}/files -> ${FILESDIR}
4) remove LIB_DEPENDS for mpqc-mpich (redundant)
Reported by: bento's log
Reviewed by: okazaki and sf
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Reported by: bento via kris
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PR: 54834
Submitted by: Glenn Johnson <glennpj@charter.net> (maintainer)
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This program package calcluates virtually exact solution of the
Hartree-Fock and Hartree-Fock-Salter equations for diatomic
molecules (distributed under GPL).
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