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* - Update to 0.9.2Wen Heping2018-01-042-4/+4
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* Cleanup Mk/Uses/gnome.mk.Mathieu Arnold2018-01-031-1/+1
| | | | | | | | | | | | | | - Remove the use of comp_DETECT. - Remove all comp_DETECT variables. - Remove a use of comp_DETECT outside of gnome.mk - Remove py3gobject3. - Have ports depending directly on devel/py-gobject3 use gnome to do it. PR: 224618 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D13550
* science/InsightToolkit: Modify patch to use ${CMAKE_DL_LIBS}Ben Woods2018-01-031-4/+4
| | | | | | | | | | | ${CMAKE_DL_LIBS} expands to "" on FreeBSD where the dl functions are included in the Standard C library (libc), but to "dl" on operating systems where the dl functions are part of libdl. This change to the patch does not result in a change in contents of the resulting package. Reported by: jbeich
* New USES=eigenTobias C. Berner2018-01-035-13/+9
| | | | | | | | | | | | | | | | | | | | | | Usage: USES=eigen:<version>[,<type>] version: 2 or 3 (required) type: build (default), run For example: USES=eigen:2,build,run will add a BUILD- and RUN_DEPENDS on math/eigen2, and USES=eigen:3 will add a BUILD_DEPENDS on math/eigen3. * Convert the existing ports to use it - biology/iqtree: remove run time dependency (seemed not to be needed) - graphics/movit: remove run time dependency (seemed not to be needed) - science/avogadro: add run time dependeny (installed cmake file requires it to be present) Reviewed by: rakuco, mat Differential Revision: https://reviews.freebsd.org/D13702
* science/InsightToolkit: Fix build (r457496 accidentally excluded patch)Ben Woods2017-12-312-0/+28
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* science/lamprop: Update to 3.4Luca Pizzamiglio2017-12-294-13/+21
| | | | | PR: 221544 Submitted by: rsmith@xs4all.nl (maintainer)
* science/InsightToolkit: Update to 4.13.0Ben Woods2017-12-293-7/+79
| | | | | Changes this release: https://discourse.itk.org/t/itk-4-13-has-been-released/549
* Update to 1.25.0Sunpoet Po-Chuan Hsieh2017-12-283-4/+133
| | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* devel/google{test,mock}: update to 1.8.0.450Jan Beich2017-12-284-1/+4
| | | | Changes: https://github.com/google/googletest/compare/f1a87d7...5490beb
* science/libefp: Update to 1.5.0Yuri Victorovich2017-12-243-4/+6
| | | | | | Reported by: portscout Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13598
* Update to 2.2.26Sunpoet Po-Chuan Hsieh2017-12-242-4/+4
| | | | Changes: https://github.com/Unidata/UDUNITS-2/blob/master/CHANGE_LOG
* e-added port: science/PETSc: Suite of data structures and routines from ↵Yuri Victorovich2017-12-215-0/+310
| | | | | | | | | | | | | Argonne National Laboratory (existed 2004/11/21-2014/09/01, deleted in r366959) Replacing the identical version committed by me as a new port in r456696. The old math/petsc port also had a slave port math/petsc-mpich that has also been deleted. Original differential revision is https://reviews.freebsd.org/D13527 Submitted by: myself Reported by: thierry that math/petsc and math/petsc-mpich existed before Approved by: adamw (mentor)
* Deleting science/PETSc: The previously-deleted port math/petsc exists. It ↵Yuri Victorovich2017-12-215-310/+0
| | | | will be resurrected and this version will be committed with it.
* Remove dependency on swigBaptiste Daroussin2017-12-201-3/+2
| | | | | I can't find any direct call to the swig binary in the code meaning having swig as a run time dependency should not be a requirement
* Switch from swig1.3 to swig 3.0Baptiste Daroussin2017-12-201-1/+2
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* - Canonicalize LIB_DEPENDSAntoine Brodin2017-12-202-173/+173
| | | | | | | | - Limit to python 2.7, the dependencies and the plist are not compatible with python3 - Cleanup plist With hat: portmgr (poudriere bulk -a broken)
* Re-added port: science/py-pymol: OpenGL based molecular visualization system ↵Yuri Victorovich2017-12-207-0/+1108
| | | | | | | (existed 2002/08/13-2014/09/01, deleted in r366862) Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D12902
* New port: science/MOOSE-neural-simulator: Multiphysics Object Oriented ↵Yuri Victorovich2017-12-206-0/+272
| | | | | | | | | | | | | | | | | | Simulation Environment Multiphysics Object Oriented Simulation Environment MOOSE-neural-simulator allows to simulate - chemical and biochemical reactions - networks of neurons - neural networks This project is commonly referred to as MOOSE, in the capitalized form. There is another science project called MOOSE, completely unrelated to this one, which will also be ported. MOOSE-neural-simulator is a candidate for the future 'chemistry' category in case it will be approved. Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13539
* Mark more recently failing ports broken on aarch64.Mark Linimon2017-12-191-2/+3
| | | | | | While here, pet portlint and reformat some other BROKEN statements. Approved by: portmgr (tier-2 blanket)
* New port: science/PETSc: Suite of data structures and routines from Argonne ↵Yuri Victorovich2017-12-196-0/+311
| | | | | | | National Laboratory Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13527
* science/R-cran-fastICA: FastICA Algorithms to Perform ICA and Projection PursuitDavid Naylor2017-12-184-0/+25
| | | | Generated by: portcran (0.1.7)
* - Fix LICENSEDmitry Marakasov2017-12-182-2/+2
| | | | | | - Update WWW Approved by: portmgr blanket
* - Update to 1.1.0Wen Heping2017-12-162-5/+4
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* science/paraview: Unbreak build with clang 4.0Jason W. Bacon2017-12-135-10/+121
| | | | | | | PR: 216634 Submitted by: Jan Beich Approved by: jrm (mentor), maintainer timeout (3.5 months) Differential Revision: https://reviews.freebsd.org/D13462
* Update to 1.9.2Sunpoet Po-Chuan Hsieh2017-12-125-15/+23
| | | | | | | | - Update MASTER_SITES - Update WWW Changes: https://code.mpimet.mpg.de/news/392 https://code.mpimet.mpg.de/news/387
* - Those ports fail to build with python3Antoine Brodin2017-12-121-4/+3
| | | | - Add some explicit FLAVOR to dependencies where needed
* Update WWWSunpoet Po-Chuan Hsieh2017-12-111-5/+5
| | | | - Reformat pkg-descr
* Update WWWSunpoet Po-Chuan Hsieh2017-12-111-7/+6
| | | | - Reformat pkg-descr
* Update WWWSunpoet Po-Chuan Hsieh2017-12-111-7/+6
| | | | - Reformat pkg-descr
* Update WWWSunpoet Po-Chuan Hsieh2017-12-111-7/+6
| | | | - Reformat pkg-descr
* - Those ports fail to build with python3Antoine Brodin2017-12-111-1/+1
| | | | - Add some explicit FLAVOR to dependencies where needed
* mei fails to build with python3Antoine Brodin2017-12-091-1/+1
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* science/mcstas: switch back to PORTVERSIONSteve Wills2017-12-072-66/+66
| | | | Avoids an issue with verion going backwards.
* - Fix LICENSEDmitry Marakasov2017-12-062-3/+4
| | | | | | | | - Add LICENSE_FILE - Switch to new test framework - Update WWW Approved by: portmgr blanket
* New port: science/mcxtrace: Monte Carlo X-ray tracing packageYuri Victorovich2017-12-066-0/+95
| | | | | | | PR: 206505 Submitted by: Erik B Knudsen <erkn@fysik.dtu.dk> Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13216
* science/mcstas: simplify MakefileSteve Wills2017-12-065-123/+76
| | | | | | | While here, remove unecessary pkg-install/deinstall PR: 223905 Submitted by: Erik B Knudsen <erkn@fysik.dtu.dk> (maintainer)
* Add new port science/aircraft-datcomRodrigo Osorio2017-12-045-0/+47
| | | | | | | | aircraft-datcom is a modified version of USAF Aircraft DATCOM The goal of the project is to update the code and make it more usable by the end users PR: 207928 Submitted by: Michael Danilov <mike.d.ft402@gmail.com>
* New port: science/ALPSCore: Generic algorithms and utilities for condensed ↵Yuri Victorovich2017-12-045-0/+187
| | | | | | | | | matter physics PR: 223850 Submitted by: Michael Danilov <mike.d.ft402@gmail.com> Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13237
* Forgot to bump revision of FORTRAN libs in the previous commit.Thierry Thomas2017-12-031-2/+2
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* Upgrade HDF5 to 1.8.20.Thierry Thomas2017-12-033-10/+9
| | | | | Release notes at https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20-RELEASE.txt
* Fix configure options for gnustep-makeDavid Chisnall2017-12-033-3/+3
| | | | | | | We were not setting the flag to select the GNUstep ABI, so were defaulting to using the GCC-compatible version, which was likely to trigger a lot of subtle bugs. This was noticed when C++ exceptions thrown through Objective-C stack frames caused segfaults.
* Cleanup LIB_DEPENDS on libpngAntoine Brodin2017-12-011-1/+1
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* Security update OpenEXR and ilmbase to 2.2.1.Matthias Andree2017-12-011-1/+1
| | | | | | | | | | | | | | | | | | | While here, fix libIlmImfUtil_la_LDFLAGp so that when linking libIlmImfUtil, the locally built libIlmImf gets precedence over the one in /usr/local, to permit upgrades in a running system with the older version installed. This changes the library's SONAME, so bump PORTREVISION of all dependees. Unfortunately, this looks a bit too intrusive for an MFH to 2017Q4. Security: CVE-2017-9110 Security: CVE-2017-9111 Security: CVE-2017-9112 Security: CVE-2017-9113 Security: CVE-2017-9114 Security: CVE-2017-9115 Security: CVE-2017-9116 Security: 803879e9-4195-11e7-9b08-080027ef73ec
* Convert Python ports to FLAVORS.Mathieu Arnold2017-11-3030-90/+89
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Ports using USE_PYTHON=distutils are now flavored. They will automatically get flavors (py27, py34, py35, py36) depending on what versions they support. There is also a USE_PYTHON=flavors for ports that do not use distutils but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if using distutils but flavors are not wanted. A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been added to cope with Python ports that did not have the Python PKGNAMEPREFIX but are flavored. USES=python now also exports a PY_FLAVOR variable that contains the current python flavor. It can be used in dependency lines when the port itself is not python flavored. For example, deskutils/calibre. By default, all the flavors are generated. To only generate flavors for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf. In all the ports with Python dependencies, the *_DEPENDS entries MUST end with the flavor so that the framework knows which to build/use. This is done by appending '@${PY_FLAVOR}' after the origin (or @${FLAVOR} if in a Python module with Python flavors, as the content will be the same). For example: RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} PR: 223071 Reviewed by: portmgr, python Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D12464
* Also not for armv7. Missed in previous sweep.Mark Linimon2017-11-301-1/+1
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* For ports that are marked BROKEN on armv6, and also fail to build onMark Linimon2017-11-302-0/+2
| | | | | | | | | | armv7, mark them so. This is part two of a multipart commit to bring armv7 ports to parity with armv6. Approved by: portmgr (tier-2 blanket) Obtained from: lonesome.com -exp run
* For ports that are marked NOT_FOR/ONLY_FOR armv6, also mark them soMark Linimon2017-11-301-1/+1
| | | | | | | | | on armv7. This is part one of a multipart commit to bring armv7 ports to parity with armv6. Approved by: portmgr (tier-2 blanket)
* Upgrade to 3.0.2.Thierry Thomas2017-11-254-261/+377
| | | | | | | | The new version brings important support for Abaqus(TM) and will be supported in a future release of CalculiX. PR: 216315 Submitted by: Pedro F. Giffuni
* New port: science/chemps2: Spin-adapted implementation of DMRG for ab initio ↵Yuri Victorovich2017-11-236-0/+132
| | | | | | | quantum chemistry Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13100
* New port: science/gdma: Anthony Stone's Gaussian Distributed Multipole AnalysisYuri Victorovich2017-11-185-0/+39
| | | | | Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13110
* Chase metis-edf's upgrade.Thierry Thomas2017-11-172-3/+14
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* New port: science/py-scoria: Lightweight molecule manipulation codebaseYuri Victorovich2017-11-174-0/+29
| | | | | Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13119
* New port: science/erd: AcesIII electron repulsion integralsYuri Victorovich2017-11-155-0/+40
| | | | | Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13080
* New port: science/pcmsolver: API for the Polarizable Continuum ModelYuri Victorovich2017-11-155-0/+137
| | | | | Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13069
* New port: science/libefp: Effective fragment potential method in quantum ↵Yuri Victorovich2017-11-145-0/+88
| | | | | | | chemistry Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13072
* New port: science/dkh: Wolf, Reiher, and Hess's Douglas-Kroll-Hess ↵Yuri Victorovich2017-11-135-0/+40
| | | | | | | relativistic correction Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13068
* Fix libhdf5-18.settings and suffix usage in tools.Thierry Thomas2017-11-1313-31/+193
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* Update to 1.0.2Sunpoet Po-Chuan Hsieh2017-11-133-6/+6
| | | | Changes: https://gitlab.dkrz.de/k202009/libaec/blob/master/CHANGELOG.md
* Update to 1.24.0Sunpoet Po-Chuan Hsieh2017-11-133-5/+7
| | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* New port: science/py-qspin: Learn quantum spin and entanglementYuri Victorovich2017-11-114-0/+36
| | | | | | PR: 221401 Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D12993
* Mark BROKEN: fails to buildAntoine Brodin2017-11-061-0/+2
| | | | | | | | Extracting Bazel installation... ERROR: /wrkdirs/usr/ports/science/py-tensorflow/work/tensorflow-1.2.1/bazel_ot/f4693a59cc0f39b12832b03860533e20/external/io_bazel_rules_closure/closure/private/defs.bzl:27:16: The `set` constructor for depsets is deprecated and will be removed. Please use the `depset` constructor instead. You can temporarily enable the deprecated `set` constructor by passing the flag --incompatible_disallow_set_constructor=false ERROR: error loading package '': Extension file 'closure/private/defs.bzl' has errors Reported by: pkg-fallout
* Update to 1.14.3Sunpoet Po-Chuan Hsieh2017-11-052-4/+4
| | | | | Changes: https://github.com/pysal/pysal/releases https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
* Don't try to look for PLIST under .OBJDIRJan Beich2017-11-021-1/+1
| | | | | | | | | | | | | | | | | | | If MAKEOBJDIRPREFIX and WRKDIRPREFIX are same PLIST may point to a non-existing file under .OBJDIR without breaking build. $ export MAKEOBJDIRPREFIX=/tmp $ echo WRKDIRPREFIX=/tmp >>${__MAKE_CONF-/etc/make.conf} $ cd /usr/ports/print/harfbuzz-icu $ make clean patch $ make -V .OBJDIR /tmp/usr/ports/print/harfbuzz-icu $ make install $ pkg info -l harfbuzz-icu harfbuzz-icu-1.5.1_2: PR: 219008 Submitted by: Ilia Skalozubov (based on) Approved by: portmgr blanket
* Fix whitespace issues (mixed tab/spaces, alignment) in a few ports.Jimmy Olgeni2017-10-311-1/+1
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* - update from 0.3 to 0.4Mikhail Pchelin2017-10-302-5/+4
| | | | Approved by: jpaetzel (mentor)
* - update from 1.1.0 to 1.3.0Mikhail Pchelin2017-10-307-82/+21
| | | | Approved by: jpaetzel (mentor)
* - update from 2.2 to 2.3Mikhail Pchelin2017-10-302-12/+9
| | | | Approved by: jpaetzel (mentor)
* Fix options usage.Mathieu Arnold2017-10-271-5/+2
| | | | | | | | | You cannot set a variable after any include and use it in options, as options is one of the few things that are done very very early. PR: 223071 Reported by: antoine Sponsored by: Absolight
* Update to 4.5.0Sunpoet Po-Chuan Hsieh2017-10-2215-16/+20
| | | | | | - Pet portlint: reorder LICENSE knobs Changes: https://github.com/Unidata/netcdf-c/releases
* science/pulseview: Update to version 0.4.0, switch to QT5.Boris Samorodov2017-10-124-30/+14
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* science/sigrok-cli: Update to version 0.7.0.Boris Samorodov2017-10-122-4/+4
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* science/sigrok-firmware-fx2laf: Update to version 0.1.5.Boris Samorodov2017-10-122-4/+4
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* For ports that are explicitly enabled on armv6, also enable themMark Linimon2017-10-111-1/+1
| | | | | | | on armv7. This has not been tested with an -exp run but should "do no harm". PR: 221894 (partial)
* science/py-scikit-fuzzy: Update to 0.3.1Luca Pizzamiglio2017-10-092-4/+4
| | | | | | | PR: 222843 Submitted by: yuri@rawbw.com (maintainer) Approved by: olivier (mentor) Differential Revision: https://reviews.freebsd.org/D12626
* Convert PORTDATA=* and PORTDOCS=* to PLIST entriesSunpoet Po-Chuan Hsieh2017-10-082-2/+9
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* Convert PORTDATA=* to PLIST entriesSunpoet Po-Chuan Hsieh2017-10-082-2/+3606
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* Update to 1.3.5Sunpoet Po-Chuan Hsieh2017-10-032-4/+4
| | | | | Changes: https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog https://github.com/Try2Code/cdo-bindings/commits/master
* science/gnudatalanguage: unbreak with gcc6 on 10.*Jan Beich2017-09-271-0/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_decinc_dot_expr(ProgNode*, int)': GDLInterpreter.cpp:(.text+0x4c24): undefined reference to `operator delete(void*, unsigned int)' GDLInterpreter.cpp:(.text+0x4f51): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_arrayexpr_mfcall_as_arrayexpr(ProgNode*, BaseGDL*)': GDLInterpreter.cpp:(.text+0x51e9): undefined reference to `operator delete(void*, unsigned int)' GDLInterpreter.cpp:(.text+0x5442): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_arrayexpr_mfcall(ProgNode*, BaseGDL*)': GDLInterpreter.cpp:(.text+0x5ab2): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o:GDLInterpreter.cpp:(.text._ZN5antlr15CharInputBufferD0Ev[_ZN5antlr15CharInputBufferD5Ev]+0x5d): more undefined references to `operator delete(void*, unsigned int)' follow src/CMakeFiles/gdl.dir/basic_fun.cpp.o: In function `ForInfoListT<ForLoopInfoT, 32ull>::resize(unsigned long long)': basic_fun.cpp:(.text._ZN12ForInfoListTI12ForLoopInfoTLy32EE6resizeEy[_ZN12ForInfoListTI12ForLoopInfoTLy32EE6resizeEy]+0x17e): undefined reference to `operator delete[](void*, unsigned int)' src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommon::~DCommon()': dcommon.cpp:(.text+0xf5): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommon::~DCommon()': dcommon.cpp:(.text+0x154): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommonRef::~DCommonRef()': dcommon.cpp:(.text+0x3fd): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommon::AddVar(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)': dcommon.cpp:(.text+0x482): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/dcompiler.cpp.o: In function `DCompiler::ForwardFunction(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)': dcompiler.cpp:(.text+0x226): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/dcompiler.cpp.o:dcompiler.cpp:(.text+0x314): more undefined references to `operator delete(void*, unsigned int)' follow src/CMakeFiles/gdl.dir/envt.cpp.o: In function `ForInfoListT<ForLoopInfoT, 32ull>::~ForInfoListT()': envt.cpp:(.text._ZN12ForInfoListTI12ForLoopInfoTLy32EED2Ev[_ZN12ForInfoListTI12ForLoopInfoTLy32EED5Ev]+0x76): undefined reference to `operator delete[](void*, unsigned int)' src/CMakeFiles/gdl.dir/envt.cpp.o: In function `EnvUDT::~EnvUDT()': envt.cpp:(.text._ZN6EnvUDTD2Ev[_ZN6EnvUDTD5Ev]+0xca): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/extrat.cpp.o: In function `ExtraT::ResolveExtra(EnvBaseT*)': extrat.cpp:(.text+0x1aaa): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/fmtnode.cpp.o: In function `FMTNode::~FMTNode()': fmtnode.cpp:(.text+0x44): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/gdlexception.cpp.o: In function `WarnAboutObsoleteRoutine(antlr::ASTRefCount<DNode>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)': gdlexception.cpp:(.text+0x1c6f): undefined reference to `operator delete(void*, unsigned int)' gdlexception.cpp:(.text+0x1eab): undefined reference to `operator delete(void*, unsigned int)' src/CMakeFiles/gdl.dir/gdlxstream.cpp.o:gdlxstream.cpp:(.text._ZN10GDLXStreamD0Ev[_ZN10GDLXStreamD5Ev]+0x1d): more undefined references to `operator delete(void*, unsigned int)' follow PR: 219300 Reported by: pkg-fallout Submitted by: rakuco
* devel/google{test,mock}: update to 1.8.0.358Jan Beich2017-09-254-4/+4
| | | | Changes: https://github.com/google/googletest/compare/59c795c...f1a87d7
* devel/boost-*: update to 1.65.1Jan Beich2017-09-2511-11/+11
| | | | | | | | | Changes: http://www.boost.org/users/history/version_1_65_1.html PR: 218835 Approved by: maintainer timeout (1.65.1: 2 weeks; 1.65.0: 1 month) Tested by: jhibbits (on powerpc64, earlier version) Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D11582
* devel/boost-*: enable C++11 featuresJan Beich2017-09-2511-11/+11
| | | | | | | | PR: 218835 Obtained from: https://github.com/DragonFlyBSD/DeltaPorts/pull/690 Approved by: maintainer timeout (2 months) Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D11582
* Update to 1.14.2Sunpoet Po-Chuan Hsieh2017-09-252-4/+4
| | | | | Changes: https://github.com/pysal/pysal/releases https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
* Update LICENSESunpoet Po-Chuan Hsieh2017-09-251-2/+1
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* science/InsightToolkit: Update to 4.12.2Ben Woods2017-09-233-4/+5
| | | | | Changes this release: https://public.kitware.com/pipermail/community/2017-September/013607.html
* Remove USES=execinfo.Mathieu Arnold2017-09-223-3/+2
| | | | | | | PR: 220271 Submitted by: mat (review), Yasuhiro KIMURA (PR) Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D11488
* science/py-netCDF4: Update version 1.2.7=>1.2.9Muhammad Moinur Rahman2017-09-202-6/+11
| | | | - Conditional installation of DOCS and EXAMPLES
* Fix license information for portgs that use "the same license as Perl".Mathieu Arnold2017-09-155-5/+5
| | | | Sponsored by: Absolight
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2017-09-1139-33/+39
| | | | | | | | | | | | | | (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275
* - Add new port: science/R-cran-kernlabTAKATSU Tomonari2017-09-104-0/+27
| | | | | | | | | | Kernel-based machine learning methods for classification, regression, clustering, novelty detection, quantile regression and dimensionality reduction. Among other methods 'kernlab' includes Support Vector Machines, Spectral Clustering, Kernel PCA, Gaussian Processes and a QP solver. WWW: https://cran.r-project.org/web/packages/kernlab/
* Update to 1.3.4Sunpoet Po-Chuan Hsieh2017-09-092-4/+4
| | | | | Changes: https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog https://github.com/Try2Code/cdo-bindings/commits/master
* Update to 1.3.4Sunpoet Po-Chuan Hsieh2017-09-092-4/+4
| | | | | Changes: https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog https://github.com/Try2Code/cdo-bindings/commits/master
* Update to 1.9.0Sunpoet Po-Chuan Hsieh2017-09-095-14/+26
| | | | Changes: https://code.zmaw.de/news/380
* - Update to 2.19TAKATSU Tomonari2017-08-282-5/+4
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* Update to 1.23.1Sunpoet Po-Chuan Hsieh2017-08-272-4/+4
| | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* Revert r447879.Raphael Kubo da Costa2017-08-271-0/+1
| | | | | | | | | Apparently the build is indeed broken with parallel jobs, even though I wasn't able to reproduce it in my tests. Checking what's broken would take time and anyone interested in that should rather try updating the port to 3.6.0. PR: 219293 Reported by: John Marino <freebsdml@marino.st>
* Add LICENSESunpoet Po-Chuan Hsieh2017-08-261-0/+5
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* science/InsightToolkit: Update to 4.12.1Ben Woods2017-08-242-4/+4
| | | | | Changes this release: http://public.kitware.com/pipermail/community/2017-August/013534.html
* Bump PORTREVISION to reflect print/gl2ps changes.Marcelo Araujo2017-08-241-1/+1
| | | | | PR: ports/218399 (based on) Submitted by: emaste
* - Update to 0.54Frederic Culot2017-08-222-4/+5
| | | | Changes: http://search.cpan.org/dist/Physics-Unit/Changes
* Update GNUstep core libraries.David Chisnall2017-08-2120-10/+149
| | | | | | | | | | Update the default Objective-C compiler. Fix various build failures in GNUstep ports from newer versions of the GNUstep core libraries and from changes to GNUstep Make. Update various ports that use GNUstep and bump the portrevision of the ones that haven't had a new release.
* Pet portlint: move BROKEN_* upwardSunpoet Po-Chuan Hsieh2017-08-201-2/+2
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* Backport a patch to fix the build with GCC 6.Raphael Kubo da Costa2017-08-161-0/+22
| | | | | | | Obtained from: https://sourceforge.net/p/gnudatalanguage/bugs/688/#4622 PR: 219300 Approved by: thierry (maintainer)
* Ad TensorFlow 1.2.1Li-Wen Hsu2017-08-1510-0/+7761
| | | | | PR: 219609 Submitted by: Jov <amutu@amutu.com>
* science/gramps: Update to 4.2.6Ben Woods2017-08-142-4/+4
| | | | | Changes this release: https://gramps-project.org/introduction-WP/2017/08/gramps-4-2-6-released/
* Drop MAKE_JOBS_UNSAFE.Raphael Kubo da Costa2017-08-131-1/+0
| | | | | | Tentatively remove it after testing the port with -j2 and -jLOTS_OF_CORES. PR: 219293
* Add patch to drop a wrong ';' in an if check.Raphael Kubo da Costa2017-08-132-1/+20
| | | | | | | | | | | | | | | In addition to fixing an actual bug, this also fixes the build with GCC 6: /wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp: In member function 'bool massXpert::PropListHolder::removeProp(const QString&)': /wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:216:2: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if(m_propList.at(iter)->name() == name); ^~ /wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:217:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' { PR: 219293 Approved by: maintainer timeout (vg, 18 days) MFH: 2017Q3
* - Update The Glorious Glasgow Haskell Compiler to version 8.0.2Tobias C. Berner2017-08-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Simplified port by only suporting GCC, and creating a build.mk file - Update Pandoc to 1.19.2.1 - Update git-annex to 6.20170520 - Update Darcs to 2.12.5 - Update Gtk2Hs to 0.13.2.2 - Update Agda to 2.5.2 Please note that port revisions for all the Haskell ports without version changes are bumped. See the UPDATING file for instructions. New ports (63): hs-EdisonAPI API for EdisonCore hs-EdisonCore Efficent, purely-functional data structures hs-ListLike Generic support for list-like structures hs-Only Canonical anonymous 1-tuple type hs-aeson-compat Compatibility layer for aeson hs-attoparsec-iso8601 Parsing of ISO 8601 dates hs-base-compat Compatibility with later versions of base hs-call-stack Support call stacks hs-clock Access to high-resolution clocks and timers hs-code-page Adjusting code pages on Windows hs-colour Data type for colors and transparency hs-concurrent-output Ungarble output from several threads hs-cryptohash-md5 Pure MD5 implementation hs-cryptohash-sha1 Pure SHA-1 implementation hs-cryptohash-sha256 Pure SHA-256 implementation hs-data-endian Endian-sensitive data hs-dbus Client for the D-Bus IPC system hs-disk-free-space Retrieving information about disk space usage hs-doctemplates Pandoc-style document templates hs-ed25519 Ed25519 public-key signature system hs-fdo-notify FreeDesktop.org's Desktop Notifications hs-fixed Signed 15.16 precision fixed point arithmetic hs-fmlist FoldMap lists hs-foundation Custom Prelude hs-gitrev Compile-time git revision info hs-graphviz Binding for the GraphViz library hs-hackage-security Tools for securing the Hackage package server hs-half Half-precision floating-point hs-haskell-lexer Fully compliant Haskell 98 lexer hs-http-api-data Converting types to and from HTTP API data hs-integer-logarithms Integer logarithms implementation hs-io-streams Easy-to-use primitives for I/O using streams hs-io-streams-haproxy HAProxy protocol version 1.5 support hs-magic Binding to the libmagic library hs-microlens Microlens hs-microlens-th Automated generation of lenses hs-microstache Mustache templates hs-monad-unlift Type classes for unlifting monad transformers hs-monadplus Partial maps and filters over MonadPlus hs-mono-traversable-instances Extra type classes for mono-traversable hs-mountpoints Listing currently mounted filesystems hs-newtype-generics Full replacement of newtype hs-pretty-show Working with derived Show instances hs-process-extras Read process input/output as ByteString/Text hs-psqueues Priority Search Queues hs-readable Reading data types from ByteString/Text hs-refact Data type for apply-refact hs-regex-pcre PCRE backend to accompany regex-base hs-safe-exceptions Safe, consistent, and easy exception handling hs-say Send messages to handles in a thread-safe way hs-scanner Incremental combinator parser for ByteStrings hs-skylighting Syntax highlighting library binding hs-terminal-size Get terminal window sizes without ncurses hs-text-short Data type for keeping short strings in memory hs-th-abstraction Inspecting types via Template Haskell hs-th-lift Derive Template Haskell's Lift class hs-th-lift-instances Orphan instances for commonly used types hs-tls-session-manager TLS session manager hs-typed-process Launching/interaction with external processes hs-unexceptionalio IO without non-error/synchronous exceptions hs-uri-bytestring RFC3986 compliant URI parser hs-uri-bytestring-aeson Aeson instance for URI.ByteString hs-wl-pprint-text Version of wl-pprint to use Text Updated ports (314): hs-ALUT 2.4.0.0_1 --> 2.4.0.2 hs-Agda 2.4.2.3 --> 2.5.2 hs-Agda-stdlib 0.9_1 --> 0.13 hs-BNFC 2.8 --> 2.8.1 hs-Boolean 0.2.3 --> 0.2.4 hs-DAV 1.0.7 --> 1.3.1 hs-DRBG 0.5.4 --> 0.5.5 hs-Diff 0.3.2 --> 0.3.4 hs-GLURaw 1.5.0.1 --> 2.0.0.3 hs-GLUT 2.7.0.1_1,1 --> 2.7.0.12,1 hs-Glob 0.7.5_2 --> 0.8.0 hs-HStringTemplate 0.8.3 --> 0.8.6 hs-HTTP 4000.2.20 --> 4000.3.7 hs-HUnit 1.2.5.2_7 --> 1.6.0.0 hs-HaXml 1.25.3 --> 1.25.4 hs-HsOpenSSL 0.11.1.1 --> 0.11.4.9 hs-JuicyPixels 3.2.6 --> 3.2.8.2 hs-List 0.5.2 --> 0.6.0 hs-MemoTrie 0.6.2_2 --> 0.6.8 hs-MissingH 1.3.0.1 --> 1.4.0.1 hs-MonadRandom 0.4 --> 0.5.1 hs-ObjectName 1.1.0.0 --> 1.1.0.1 hs-OpenAL 1.7.0.0 --> 1.7.0.4 hs-OpenGL 2.12.0.1,1 --> 3.0.2.0,1 hs-OpenGLRaw 2.5.1.0_1 --> 3.2.4.0 hs-QuickCheck 2.8.1 --> 2.10.0.1 hs-RSA 2.1.0.1 --> 2.3.0 hs-ReadArgs 1.2.2 --> 1.2.3 hs-STMonadTrans 0.3.3 --> 0.4.3 hs-StateVar 1.1.0.1 --> 1.1.0.4 hs-TypeCompose 0.9.10_2 --> 0.9.12 hs-activehs 0.3.1_12 --> 0.3.2 hs-activehs-base 0.3.0.2_9 --> 0.3.0.4 hs-adjunctions 4.2.1 --> 4.3 hs-aeson 0.8.0.2 --> 1.2.1.0 hs-aeson-pretty 0.7.2 --> 0.8.5 hs-alex 3.1.4 --> 3.2.1 hs-ansi-terminal 0.6.2.1 --> 0.6.3.1 hs-asn1-data 0.7.1_9 --> 0.7.2 hs-asn1-encoding 0.9.0 --> 0.9.5 hs-asn1-parse 0.9.1 --> 0.9.4 hs-asn1-types 0.3.0 --> 0.3.2 hs-async 2.0.2 --> 2.1.1.1 hs-atomic-primops 0.8 --> 0.8.0.4 hs-attoparsec 0.12.1.6 --> 0.13.1.0 hs-authenticate 1.3.2.11 --> 1.3.3.2 hs-auto-update 0.1.2.2 --> 0.1.4 hs-aws 0.12.1 --> 0.16 hs-base-orphans 0.4.4 --> 0.6 hs-basic-prelude 0.5.0 --> 0.6.1.1 hs-bifunctors 5 --> 5.4.2 hs-blaze-builder 0.4.0.1 --> 0.4.0.2 hs-blaze-html 0.8.1.0 --> 0.9.0.1 hs-blaze-markup 0.7.0.2 --> 0.8.0.0 hs-brainfuck 0.1.0.2 --> 0.1.0.3 hs-c2hs 0.28.1_1 --> 0.28.2_1 hs-cabal-install 1.22.6.0 --> 1.24.0.2 hs-cairo 0.13.1.0 --> 0.13.3.1 hs-case-insensitive 1.2.0.4 --> 1.2.0.10 hs-cassava 0.4.3.1 --> 0.5.0.0 hs-cereal 0.4.1.1 --> 0.5.4.0 hs-cgi 3001.2.2.2,1 --> 3001.3.0.2,1 hs-checkers 0.4.3 --> 0.4.7 hs-chunked-data 0.2.0 --> 0.3.0 hs-cipher-aes128 0.7.0.1 --> 0.7.0.3 hs-classy-prelude 0.12.1.1 --> 1.2.0.1 hs-classy-prelude-conduit 0.12.0.1 --> 1.2.0 hs-clientsession 0.9.1.1 --> 0.9.1.2 hs-cmark 0.4.0.1 --> 0.5.5.1 hs-cmdargs 0.10.13 --> 0.10.17 hs-comonad 4.2.7.2 --> 5.0.1 hs-conduit 1.2.5 --> 1.2.11 hs-conduit-combinators 1.0.3 --> 1.1.1 hs-conduit-extra 1.1.9.1 --> 1.1.16 hs-connection 0.2.5 --> 0.2.8 hs-constraints 0.4.1.3 --> 0.9.1 hs-contravariant 1.3.2 --> 1.4 hs-cookie 0.4.1.6 --> 0.4.2.1 hs-cpphs 1.19 --> 1.20.8 hs-criterion 1.1.0.0 --> 1.2.1.0 hs-cryptohash 0.11.6_2 --> 0.11.9 hs-cryptohash-cryptoapi 0.1.3_2 --> 0.1.4 hs-cryptonite 0.6 --> 0.24 hs-css-text 0.1.2.1_2 --> 0.1.2.2 hs-darcs 2.10.1 --> 2.12.5 hs-data-default 0.5.3_7 --> 0.7.1.1 hs-data-default-class 0.0.1_7 --> 0.1.2.0 hs-data-default-instances-base 0.0.1_7 --> 0.1.0.1 hs-data-lens 2.10.7 --> 2.11.1 hs-data-lens-template 2.1.9 --> 2.2 hs-data-pprint 0.2.4 --> 0.2.4.1 hs-deepseq-generics 0.1.1.2 --> 0.2.0.0 hs-dia-base 0.1.1.3 --> 0.1.1.4 hs-directory-tree 0.12.0_2 --> 0.12.1 hs-distributive 0.4.4_2 --> 0.5.2 hs-dlist 0.7.1.1 --> 0.8.0.3 hs-dlist-instances 0.1_2 --> 0.1.1.1 hs-dns 2.0.0 --> 2.0.10 hs-double-conversion 2.0.1.0 --> 2.0.2.0 hs-either 4.4.1 --> 4.4.1.1 hs-ekg 0.4.0.8 --> 0.4.0.13 hs-ekg-core 0.1.1.0 --> 0.1.1.1 hs-ekg-json 0.1.0.0 --> 0.1.0.5 hs-email-validate 2.1.3 --> 2.3 hs-enclosed-exceptions 1.0.1.1 --> 1.0.2 hs-entropy 0.3.7 --> 0.3.8 hs-equivalence 0.3.1 --> 0.3.2 hs-errors 2.0.0 --> 2.2.1 hs-esqueleto 2.4.1 --> 2.5.3 hs-exceptions 0.8.0.2 --> 0.8.3 hs-extra 1.4.1 --> 1.6 hs-fast-logger 2.4.1 --> 2.4.10 hs-feed 0.3.10.0 --> 0.3.12.0 hs-fgl 5.5.2.1 --> 5.5.3.1 hs-file-embed 0.0.9 --> 0.0.10 hs-filestore 0.6.1 --> 0.6.3.1 hs-free 4.12.1 --> 4.12.4 hs-gconf 0.13.0.2 --> 0.13.1.0 hs-generic-deriving 1.8.0 --> 1.11.2 hs-geniplate-mirror 0.7.1 --> 0.7.5 hs-ghc-events 0.4.4.0 --> 0.6.0 hs-gio 0.13.1.0 --> 0.13.3.1 hs-git-annex 5.20150727_1 --> 6.20170520 hs-gitit 0.11.1 --> 0.12.2.1 hs-glib 0.13.1.1 --> 0.13.4.1 hs-gnuidn 0.2.1_3 --> 0.2.2 hs-gtk 0.13.9 --> 0.14.6 hs-gtk2hs 0.13,1 --> 0.13.2.2,1 hs-gtk2hs-buildtools 0.13.0.4_1 --> 0.13.2.2 hs-gtksourceview2 0.13.1.3 --> 0.13.3.1 hs-haddock 2.16.1 --> 2.17.5 hs-haddock-api 2.16.1 --> 2.17.4 hs-haddock-library 1.2.1 --> 1.4.3 hs-happstack-server 7.4.4 --> 7.4.6.4 hs-hashable 1.2.3.3,1 --> 1.2.6.1,1 hs-hashtables 1.2.0.2 --> 1.2.1.1 hs-haskell-src-exts 1.16.0.1 --> 1.19.1 hs-hasktags 0.69.1 --> 0.69.3 hs-hedis 0.6.9 --> 0.9.8 hs-heist 0.14.1.1 --> 1.0.1.0 hs-hexpat 0.20.9 --> 0.20.13 hs-highlighting-kate 0.6 --> 0.6.4 hs-hinotify 0.3.8.1 --> 0.3.9 hs-hint 0.4.2.3 --> 0.7.0 hs-hjsmin 0.1.5.0 --> 0.2.0.2 hs-hlint 1.9.21 --> 2.0.9 hs-hoauth2 0.4.8 --> 0.5.9 hs-hoogle 4.2.41 --> 5.0.12 hs-hourglass 0.2.9 --> 0.2.10 hs-hscolour 1.23,1 --> 1.24.1,1 hs-hslogger 1.2.9 --> 1.2.10 hs-hslua 0.4.0 --> 0.5.0 hs-hspec 2.1.10 --> 2.4.4 hs-hspec-core 2.1.10 --> 2.4.4 hs-hspec-discover 2.1.10 --> 2.4.4 hs-hspec-expectations 0.7.1 --> 0.8.2 hs-html-conduit 1.2.0 --> 1.2.1.1 hs-http-client 0.4.20 --> 0.5.7.0 hs-http-client-tls 0.2.2_2 --> 0.3.5.1 hs-http-conduit 2.1.8 --> 2.2.3.1 hs-http-reverse-proxy 0.4.2 --> 0.4.4 hs-http-types 0.8.6 --> 0.9.1 hs-http2 1.0.4 --> 1.6.3 hs-hxt 9.3.1.15 --> 9.3.1.16 hs-hxt-regex-xmlschema 9.2.0.2 --> 9.2.0.3 hs-ieee754 0.7.6 --> 0.8.0 hs-iproute 1.5.0 --> 1.7.1 hs-js-jquery 1.11.3 --> 3.2.1 hs-kan-extensions 4.2.2 --> 5.0.2 hs-keys 3.10.2 --> 3.11 hs-kqueue 0.1.2.6_2 --> 0.2 hs-language-c 0.5.0 --> 0.6.1 hs-language-javascript 0.5.14.2 --> 0.6.0.10 hs-largeword 1.2.3_2 --> 1.2.5 hs-lens 4.12.3 --> 4.15.3 hs-libmpd 0.9.0.2 --> 0.9.0.6 hs-lifted-async 0.7.0.1 --> 0.9.3 hs-lifted-base 0.2.3.6 --> 0.2.3.11 hs-map-syntax 0.2 --> 0.2.0.2 hs-math-functions 0.1.5.2_2 --> 0.2.1.0 hs-memory 0.8 --> 0.14.6 hs-mime-mail 0.4.9 --> 0.4.13.1 hs-mime-types 0.1.0.6 --> 0.1.0.7 hs-mmorph 1.0.4 --> 1.1.0 hs-monad-control 1.0.0.4 --> 1.0.2.1 hs-monad-logger 0.3.13.2 --> 0.3.24 hs-monad-par 0.3.4.7 --> 0.3.4.8 hs-monadcryptorandom 0.6.1_2 --> 0.7.1 hs-monads-tf 0.1.0.2_2 --> 0.1.0.3 hs-mono-traversable 0.9.2.1 --> 1.0.2 hs-mueval 0.9.1.1.2 --> 0.9.3 hs-murmur-hash 0.1.0.8 --> 0.1.0.9 hs-mutable-containers 0.3.2 --> 0.3.3 hs-mwc-random 0.13.3.2 --> 0.13.6.0 hs-mysql 0.1.1.8 --> 0.1.4 hs-network 2.6.2.1 --> 2.6.3.2 hs-network-info 0.2.0.7 --> 0.2.0.8 hs-network-multicast 0.1.0 --> 0.2.0 hs-network-uri 2.6.0.3 --> 2.6.1.0 hs-nonce 1.0.2 --> 1.0.4 hs-oeis 0.3.6 --> 0.3.9 hs-optparse-applicative 0.11.0.2 --> 0.14.0.0 hs-pandoc 1.15.0.6_1 --> 1.19.2.1 hs-pandoc-citeproc 0.7.3.1 --> 0.10.5.1 hs-pandoc-types 1.12.4.5 --> 1.19 hs-pango 0.13.1.0 --> 0.13.3.1 hs-parallel 3.2.0.6 --> 3.2.1.1 hs-parsec 3.1.9 --> 3.1.11 hs-path-pieces 0.2.0 --> 0.2.1 hs-pcre-light 0.4.0.3 --> 0.4.0.4 hs-persistent 2.2 --> 2.7.0 hs-persistent-sqlite 2.2 --> 2.6.2 hs-persistent-template 2.1.3.4 --> 2.5.2 hs-pointed 4.2.0.2 --> 5 hs-polyparse 1.11 --> 1.12 hs-prelude-extras 0.4_2 --> 0.4.0.3 hs-primitive 0.6 --> 0.6.2.0 hs-probability 0.2.4.1_2 --> 0.2.5.1 hs-profunctors 5.1.1 --> 5.2 hs-pureMD5 2.1.2.1_10 --> 2.1.3 hs-quickcheck-io 0.1.1_2 --> 0.2.0 hs-reflection 2 --> 2.1.2 hs-regex-applicative 0.3.2.1 --> 0.3.3 hs-regex-tdfa 1.2.0_2 --> 1.2.2 hs-resourcet 1.1.6 --> 1.1.9 hs-safe 0.3.9 --> 0.3.15 hs-sandi 0.3.5 --> 0.4.0 hs-scientific 0.3.3.8 --> 0.3.5.1 hs-semigroupoids 5.0.0.3 --> 5.2 hs-semigroups 0.16.2.2 --> 0.18.3 hs-setlocale 1.0.0.4 --> 1.0.0.5 hs-shake 0.15.5 --> 0.15.11 hs-shakespeare 2.0.5 --> 2.0.13 hs-shelly 1.6.3.3 --> 1.6.8.3 hs-simple-sendfile 0.2.21 --> 0.2.25 hs-skein 1.0.9.3 --> 1.0.9.4 hs-snap 0.14.0.6 --> 1.0.0.1 hs-snap-core 0.9.7.2 --> 1.0.2.1 hs-snap-server 0.9.5.1 --> 1.0.2.2 hs-socks 0.5.4_2 --> 0.5.5 hs-split 0.2.2_7 --> 0.2.3.2 hs-statistics 0.13.2.3 --> 0.14.0.2 hs-stm 2.4.4 --> 2.4.4.1 hs-streaming-commons 0.1.12.1 --> 0.1.18 hs-svgcairo 0.13.0.3 --> 0.13.1.1 hs-syb 0.5.1 --> 0.7 hs-syb-with-class 0.6.1.6 --> 0.6.1.7 hs-tagged 0.8.1 --> 0.8.5 hs-tagsoup 0.13.3 --> 0.14.1 hs-tar 0.4.2.1 --> 0.5.0.3 hs-temporary 1.2.0.3_2 --> 1.2.1 hs-test-framework-hunit 0.3.0.1_2 --> 0.3.0.2 hs-test-framework-quickcheck2 0.3.0.3_2 --> 0.3.0.4 hs-texmath 0.8.3 --> 0.9.4.1 hs-text 1.2.1.3 --> 1.2.2.2 hs-threads 0.5.1.3 --> 0.5.1.4 hs-threadscope 0.2.7 --> 0.2.8 hs-time-locale-compat 0.1.1.0 --> 0.1.1.3 hs-timezone-olson 0.1.7 --> 0.1.8 hs-timezone-series 0.1.5.1 --> 0.1.8 hs-tls 1.3.1 --> 1.3.11 hs-torrent 10000.0.0 --> 10000.1.1 hs-transformers-compat 0.4.0.4 --> 0.5.1.4 hs-unix-compat 0.4.1.4 --> 0.4.3.1 hs-unix-time 0.3.5 --> 0.3.7 hs-unlambda 0.1.4.1 --> 0.1.4.2 hs-unordered-containers 0.2.5.1 --> 0.2.8.0 hs-uri 0.1.6.3 --> 0.1.6.4 hs-utf8-string 1 --> 1.0.1.1 hs-utility-ht 0.0.10_2 --> 0.0.14_2 hs-uuid 1.3.11 --> 1.3.13 hs-uuid-types 1.0.2 --> 1.0.3 hs-uulib 0.9.20 --> 0.9.22 hs-vault 0.3.0.4 --> 0.3.0.7 hs-vector 0.10.12.3 --> 0.12.0.1 hs-vector-binary-instances 0.2.1.0_2 --> 0.2.3.5 hs-vector-instances 3.3.1 --> 3.4 hs-vector-space 0.10.2 --> 0.10.4 hs-vector-th-unbox 0.2.1.2 --> 0.2.1.6 hs-void 0.7 --> 0.7.2 hs-vte 0.13.0.2 --> 0.13.1.1 hs-wai 3.0.3.0 --> 3.2.1.1 hs-wai-app-static 3.1.1 --> 3.1.6.1 hs-wai-extra 3.0.10 --> 3.0.20.0 hs-wai-logger 2.2.4.1 --> 2.3.0 hs-warp 3.1.3 --> 3.2.13 hs-warp-tls 3.1.1 --> 3.2.4 hs-webkit 0.13.1.3 --> 0.14.2.1 hs-wx 0.91.0.0 --> 0.92.3.0 hs-wxc 0.91.0.0 --> 0.92.3.0 hs-wxcore 0.91.0.0 --> 0.92.3.0 hs-wxdirect 0.91.0.0 --> 0.92.3.0 hs-x509 1.6.0 --> 1.6.5 hs-x509-store 1.6.0 --> 1.6.2 hs-x509-system 1.6.0 --> 1.6.4 hs-x509-validation 1.6.0 --> 1.6.5 hs-xml-conduit 1.3.1 --> 1.5.1 hs-xml-hamlet 0.4.0.11 --> 0.4.1 hs-xmlhtml 0.2.3.4 --> 0.2.4 hs-xmobar 0.24.3 --> 0.24.5 hs-xss-sanitize 0.3.5.6 --> 0.3.5.7 hs-yaml 0.8.13 --> 0.8.23.1 hs-yesod 1.4.1.5 --> 1.4.5 hs-yesod-auth 1.4.6 --> 1.4.17.2 hs-yesod-auth-hashdb 1.4.2.2 --> 1.6.1 hs-yesod-bin 1.4.13.3 --> 1.5.2.3 hs-yesod-core 1.4.13 --> 1.4.35 hs-yesod-form 1.4.4.1 --> 1.4.12 hs-yesod-persistent 1.4.0.3 --> 1.4.2 hs-yesod-static 1.5.0.2 --> 1.5.3 hs-yesod-test 1.4.3.1 --> 1.5.7 hs-zip-archive 0.2.3.7 --> 0.3.1.1 hs-zlib 0.5.4.2 --> 0.6.1.2 scroll 1.20151219 --> 1.20170122 Removed ports (5): hs-MonadCatchIO-mtl Deprecated in favor of exceptions hs-MonadCatchIO-transformers Deprecated in favor of exceptions hs-citeproc-hs Replaced by pandoc-citeproc hs-directory Part of the packages shipped with GHC hs-syb-with-class-instances-text Upstream is unmaintained This was created together with pgj@. Reviewed by: pgj, 6yearold_gmail.com Differential Revision: https://reviews.freebsd.org/D11558
* - Update to 3.1.0.1Wen Heping2017-08-082-4/+4
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* Update to 1.072Sunpoet Po-Chuan Hsieh2017-08-082-4/+5
| | | | | | - Add NO_ARCH Changes: http://search.cpan.org/dist/Chemistry-Elements/Changes
* Update math/libqalculate to 1.0.0aJason E. Hale2017-08-031-1/+1
| | | | | Update math/qalculate to 1.0.0 Bump PORTREVISION on dependent ports (shlib bump in libqalculate)
* Update to 1.14.1Sunpoet Po-Chuan Hsieh2017-07-302-4/+4
| | | | | | Changes: https://github.com/pysal/pysal/releases https://github.com/pysal/pysal/blob/master/CHANGELOG.txt https://github.com/pysal/pysal/commits/dev
* Update WWW.Raphael Kubo da Costa2017-07-271-1/+1
| | | | The massxpert.org domain no longer belongs to the project.
* - Update to 1.13Wen Heping2017-07-266-49/+28
| | | | | | | - Update WWW PR: 220994 Submitted by: aehlig@linta.de(maintainer)
* Give maintainership of science/avogadro to kde@ as kalzium is the only consumer.Tobias C. Berner2017-07-251-1/+1
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* After r446199 libR.so has SONAME and was made visible forPawel Pekala2017-07-251-4/+3
| | | | | | | | | | | | consumer ports. Register correct dependency by using LIB_DEPENDS instead of BUILD|RUN_DEPENDS dance. math/rkward-kde4: - Add 2 missing files to pkg-plist also PR: 219776 Submitted by: myself Approved by: maintainers timeouts
* Update to 1.0.1Sunpoet Po-Chuan Hsieh2017-07-233-7/+8
| | | | | | - Update LICENSE_FILE Changes: https://gitlab.dkrz.de/k202009/libaec/blob/master/CHANGELOG.md
* Update to 1.14.0Sunpoet Po-Chuan Hsieh2017-07-152-4/+4
| | | | | Changes: https://github.com/pysal/pysal/releases https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
* - Add missing dependencyTAKATSU Tomonari2017-07-061-1/+3
| | | | Reported by: pkg-fallout
* * Updated to 1.7.2Richard Gallamore2017-07-056-128/+26
| | | | | | | | | | | | | * New maintainer Jov <amutu@amutu.com> * Sorted options Changelog: https://www.mbdyn.org/userfiles/downloads/CHANGELOG-1.7.txt PR: 220157 Submitted by: Jov <amutu@amutu.com> (maintainer), pfg Reviewed by: matthew (mentor), matt Approved by: matthew (mentor) Differential Revision: https://reviews.freebsd.org/D11481
* Update to 1.23.0Sunpoet Po-Chuan Hsieh2017-07-042-4/+4
| | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* Update math/gsl to 2.4Tobias C. Berner2017-07-047-6/+7
| | | | | Exp-Run by: antoine PR: 220408
* - Update to 2.16TAKATSU Tomonari2017-07-032-4/+4
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* Update to 3.4.2Sunpoet Po-Chuan Hsieh2017-07-032-5/+5
| | | | | | - Sort USE_PYTHON Changes: https://bitbucket.org/levitsky/pyteomics/src/default/CHANGELOG
* * Fix broken symlinksRichard Gallamore2017-06-301-2/+3
| | | | | | | | PR: 220081 Reported by: <metaf2xml@users.sourceforge.net> Reviewed by: lifanov (mentor) Approved by: lifanov (mentor) Differential Revision: https://reviews.freebsd.org/D11409
* Update devel/readline to 7.0 patch 3Sunpoet Po-Chuan Hsieh2017-06-273-2/+3
| | | | | | | | | | | - Bump PORTREVISION for shlib change Changes: https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html Differential Revision: https://reviews.freebsd.org/D11172 PR: 219947 Exp-run by: antoine
* - Update to 3.1.0Wen Heping2017-06-272-5/+4
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* - Add new port: science/R-cran-udunits2TAKATSU Tomonari2017-06-274-0/+26
| | | | | | Provides simple bindings to Unidata's udunits library. WWW: https://cran.r-project.org/web/packages/udunits2/
* Make ninja opt-out in cmake.mkTobias C. Berner2017-06-261-1/+1
| | | | | | | | | | | | | | | | | | | | | | | Using ninja instead of make (1) can lead to significant speed ups while building. Therefore switch from having the ninja generator opt-in to having it opt-out. Previously cmake-ports that wanted to use ninja could set CMAKE_NINJA=yes now, ports that do not work with ninja can set cmake:<existing args>,noninja Note, that needing this should be an exception and most often points to a broken cmake of the port. The ports using cmake were modified * removed USES=gmake, if ninja is used * removed MAKE_ARGS, if ninja is used * added the cmake-argument noninja if necessary PR: 219629 PR: 213331 Exp-run by: antoine Reviewed by: rakuco Differential Revision: https://reviews.freebsd.org/D10748
* - Update to 2.11.2.Stephen Montgomery-Smith2017-06-262-4/+4
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* * Updated to 2.11Richard Gallamore2017-06-262-4/+5
| | | | | | | | | | | | * New maintainer Jov <amutu@amutu.com> Changelog: https://www.csie.ntu.edu.tw/~cjlin/liblinear/log PR: 220104 Submitted by: Jov <amutu@amutu.com> (maintainer) Reviewed by: matthew (mentor) Approved by: matthew (mentor) Differential Revision: https://reviews.freebsd.org/D11351
* * Updated to 2.2Richard Gallamore2017-06-263-7/+32
| | | | | | | | | | Changelog: http://metaf2xml.sourceforge.net/RelInfo-2.2.txt PR: 220081 Submitted by: <metaf2xml@users.sourceforge.net> Reviewed by: matthew (mentor) Approved by: matthew (mentor) Differential Revision: https://reviews.freebsd.org/D11313
* Sort NOT_FOR_ARCHS. While here, clean up some BROKEN usages.Mark Linimon2017-06-251-1/+1
| | | | Approved by: portmgr (tier-2 blanket)
* - Add LICENSEDmitry Marakasov2017-06-211-14/+15
| | | | - Switch to options helpers
* - Update to 2.11.1.Stephen Montgomery-Smith2017-06-202-4/+4
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* - Update to 2.11.0.Stephen Montgomery-Smith2017-06-203-15/+4
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* science/InsightToolkit: Update to 4.12.0Ben Woods2017-06-203-4/+16
| | | | | Changes this release: http://public.kitware.com/pipermail/community/2017-June/013214.html
* * Updated to 3.22Richard Gallamore2017-06-202-4/+5
| | | | | | | | | | | | * New maintainer Jov <amutu@amutu.com> Changelog: http://www.csie.ntu.edu.tw/~cjlin/libsvm/log PR: 220102 Submitted by: Jov <amutu@amutu.com> (maintainer) Reviewed by: matthew (mentor) Approved by: matthew (mentor) Differential Revision: https://reviews.freebsd.org/D11269
* qa: add check for NO_ARCHDavid Naylor2017-06-196-8/+12
| | | | | | | | | | | | | | | | | | If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR. If an elf(5) file is bundles as part of the package, but is not meant to be run directly (i.e. the elf(5) file is a payload, and not compiled) then those files can be added to NO_ARCH_IGNORE to avoid the check from failing, Changes to ports: - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH removed. - Ports that have elf(5) payloads have had those files added to NO_ARCH_IGNORE. - R-cran ports that do not set USES=cran:compiles have NO_ARCH set, PR: 218976 Reviewed by: antoine, mat Approved by: portmgr
* science/vmd: various fixesDavid Naylor2017-06-184-45/+70
| | | | | | | | | | | | | | | | | | | | | - fix spelling of VMD license [1] - use USES=tcl,tk instead of direct dependency - patch vmd to support (tcl|tk)86 - fix shebang for tcl [1] - fix detection of netcdf - add sqlite as a dependency (for dmsplugin) [1] - add expact as a dependency (for hoomdplugin) - rework configuration: - explicitly list required components (CONFIGURE_ARGS) - call configure directly (instead of via gmake(1)) - patch configure to accept TCLLDFLAGS and TKLDFLAGS - pass PREFIX as an environment variable instead of using sed(1) - patch Make-arch to accept environment TCLLDFLAGS and NETCDFLDFLAGS - add support for parallel building (except for building plugins) - bump PORTREVISION PR: 219642 Reported by: Yuri Victorovich <yuri@rawbw.com>
* - Fix compilation error (which presumably comes from a change in header filesStephen Montgomery-Smith2017-06-181-0/+11
| | | | associated with python2).
* Upgrade science/hdf5-18 to 1.8.19.Thierry Thomas2017-06-173-20/+20
| | | | | Changelog at <https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1819>.
* Remove CONFLICTS: science/netcdf-ftn and science/netcdf3-ftn have been ↵Sunpoet Po-Chuan Hsieh2017-06-111-2/+0
| | | | removed over 3 years
* Update to 0.3Sunpoet Po-Chuan Hsieh2017-06-102-6/+8
| | | | | | | | | | - Fix LICENSE - Add LICENSE_FILE - Add missing *_DEPENDS Changes: https://github.com/scikit-fuzzy/scikit-fuzzy/releases PR: 219879 Submitted by: Yuri Victorovich <yuri@rawbw.com> (maintainer)
* science/hypre: Fix build with openmpiJoseph Mingrone2017-06-091-4/+10
| | | | | | | | | - specify full path to mpicc/mpicxx when setting CC/CXX - specify mpi include/lib dirs - set WRKSRC_SUBDIR instead of WRKSRC - whitespace changes Approved by: pfg (maintainer)
* Mark BROKEN: fails to buildAntoine Brodin2017-06-091-0/+2
| | | | | | | | | | [ 13%] Building CXX object CMakeFiles/UnitTests.dir/Orthanc/Core/SQLite/Connection.cpp.o /usr/bin/c++ -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_HAS_DATE_TIME=1 -DBOOST_HAS_FILESYSTEM_V3=1 -DBOOST_HAS_LOCALE=1 -DBOOST_HAS_REGEX=1 -DORTHANC_ENABLE_BASE64=0 -DORTHANC_ENABLE_LOGGING=0 -DORTHANC_ENABLE_MD5=0 -DORTHANC_SQLITE_STANDALONE=1 -DORTHANC_STANDALONE=1 -DORTHANC_STATIC=0 -DORTHANC_WEBVIEWER_VERSION=\"2.2\" -I/wrkdirs/usr/ports/science/orthanc-webviewer/work/.build/AUTOGENERATED -I/usr/local/include -I/usr/local/include/jsoncpp -I/usr/local/include/gdcm-2.6 -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -o CMakeFiles/UnitTests.dir/Orthanc/Core/SQLite/Connection.cpp.o -c /wrkdirs/usr/ports/science/orthanc-webviewer/work/OrthancWebViewer-2.2/Orthanc/Core/SQLite/Connection.cpp /wrkdirs/usr/ports/science/orthanc-webviewer/work/OrthancWebViewer-2.2/Orthanc/Core/SQLite/Connection.cpp:346:23: error: no matching constructor for initialization of 'Orthanc::SQLite::FunctionContext' FunctionContext context(rawContext, argc, argv); ^ ~~~~~~~~~~~~~~~~~~~~~~ Reported by: pkg-fallout
* New port, science/hypre: Scalable Linear Solvers and Multigrid MethodsJoseph Mingrone2017-06-085-0/+143
| | | | | | | | WWW: http://www.llnl.gov/casc/hypre/ PR: 219709 Submitted by: pfg (maintainer) Differential Revision: https://reviews.freebsd.org/D11048
* Fix build with SQLite 3.19.2Sunpoet Po-Chuan Hsieh2017-06-062-0/+39
| | | | | Submitted by: Pavel Volkov <pavelivolkov@gmail.com> Approved by: portmgr (blanket)
* - Update to 2.15TAKATSU Tomonari2017-06-062-4/+4
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* Update to 1.22.0Sunpoet Po-Chuan Hsieh2017-06-052-4/+4
| | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* Update to 2.7.0Tobias C. Berner2017-06-043-4/+20
| | | | | PR: 219754 Submitted by: xmj (maintainer)
* Convert to options helperSunpoet Po-Chuan Hsieh2017-06-021-13/+5
| | | | - Remove outdated PERL_LEVEL check
* science/InsightToolkit: Update to 4.11.1Ben Woods2017-06-013-16/+4
| | | | | Changes this release: http://public.kitware.com/pipermail/insight-users/2017-May/054519.html
* Remove a clash due to #include filedlg.h to fix the build with Gcc 6.Thierry Thomas2017-06-012-1/+15
| | | | | PR: 219300 Obtained from: Gilles Duvert (upstream)
* Update science/hdf5 to 1.10.1Sunpoet Po-Chuan Hsieh2017-05-3018-26/+48
| | | | | | - Bump PORTREVISION for shlib change Changes: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
* Mark some ports failing on armv6, for errors classified as "linker_error".Mark Linimon2017-05-281-0/+2
| | | | | | While here, pet portlint. Approved by: portmgr (tier-2 blanket)
* Fix CONFLICTS_INSTALLSunpoet Po-Chuan Hsieh2017-05-282-2/+2
| | | | | PR: 219388 Submitted by: pawel
* Mark some ports failing on armv6, for errors classified as "???",Mark Linimon2017-05-271-1/+1
| | | | | | | | part 2. While here, pet portlint. Approved by: portmgr (tier-2 blanket)
* science/openbabel: Update to 2.4.1Danilo G. Baio2017-05-246-659/+91
| | | | | | | | | | | | | | | Patches removed: patch-git_c3abbdda, patch-gcc5-support (Integrated upstream) patch-scripts__CMakeLists.txt (Builds without it) While here, set LICENSE and simplify BUILD_DEPENDS. Changes: https://github.com/openbabel/openbabel/releases PR: 219382 Submitted by: Yuri Victorovich <yuri@rawbw.com> Approved by: garga (mentor) Differential Revision: https://reviews.freebsd.org/D10837
* Revision bump of all ports with USE_GL after consolidation of mesa-libsMatthew Rezny2017-05-2313-12/+13
| | | | | Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10845
* - Update to 0.9.1Wen Heping2017-05-232-4/+4
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* - Update to 1.85.1Wen Heping2017-05-232-5/+7
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* Mark some ports failing on power64. In cases where the error messageMark Linimon2017-05-231-0/+2
| | | | | | | | | was a stub, provide a real one. While here, pet portlint. Approved by: portmgr (tier-2 blanket) Reported by: swills
* Update to 1.8.2Sunpoet Po-Chuan Hsieh2017-05-232-5/+5
| | | | Changes: https://code.zmaw.de/news/375
* Update to 2.2.25Sunpoet Po-Chuan Hsieh2017-05-212-4/+9
| | | | | | - Add LICENSE Changes: https://github.com/Unidata/UDUNITS-2/blob/master/CHANGE_LOG
* Mark some ports failing on power64. In cases where the error messageMark Linimon2017-05-201-1/+1
| | | | | | | | | was a stub, provide a real one. While here, pet portlint. Approved by: portmgr (tier-2 blanket) Reported by: swills
* Switch to wxgtk30.Thierry Thomas2017-05-204-2/+46
| | | | PR: 219300
* devel/google{test,mock}: update to 1.8.0.50Jan Beich2017-05-194-4/+4
| | | | Changes: https://github.com/google/googletest/compare/a2b8a8e...59c795c
* Update the comment explaining the use of USE_GCC=yes to currentGerald Pfeifer2017-05-151-4/+4
| | | | | realitiy (gfortran48 has not been the default for a while), and in fact general enough for a soon-to-come update of lang/gcc.
* Mark some ports failing on power64. In cases where the error messageMark Linimon2017-05-141-0/+2
| | | | | | | | was a stub, provide a real one. While here, pet portlint. Approved by: portmgr (tier-2 blanket)
* Consolidate the Mesa ports, update to 17.0.4, and add Wayland optionMatthew Rezny2017-05-131-6/+4
| | | | | | | | | | | | | | | | * libGL, libEGL, libglesv2, libglapi, and gbm have been moved into mesa-libs, graphics/dri has been renamed to mesa-dri, and USE_GL has been adjusted * mesa-libs has a new WAYLAND option that enables platform support in libEGL * mesa-dri now depends on graphics/s2tc for compressed texture support [1] * re-remove obsolete dependency on makedepends [2] * correct sed fix backported from 17.1 [3] PR: 218799 (exp-run), 212762 [1], 218552 [2], 218562 [3] Submitted by: dbn [1], jbeich [2,3] Reported by: afiskon@devzen.ru [1] Reviewed by: kwm, johalun0@gmail.com Approved by: portmgr, swills (mentor) Differential Revision: https://reviews.freebsd.org/D10448
* Update my email addressDanilo G. Baio2017-05-091-1/+1
| | | | | Approved by: garga (mentor) Differential Revision: https://reviews.freebsd.org/D10648
* - Update to 1.6-8TAKATSU Tomonari2017-05-072-4/+5
| | | | - Add "compiles" argument to USES=cran
* - Update to 2.12TAKATSU Tomonari2017-05-072-4/+4
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* - Fix build with gcc5Martin Wilke2017-05-061-0/+14
| | | | PR: 213985
* - Fix build with gcc5Martin Wilke2017-05-051-1/+3
| | | | PR: 218780
* Cleanup.Thierry Thomas2017-05-051-3/+9
| | | | | PR: 216315 Submitted by: pfg
* Fix shebangsTobias C. Berner2017-05-041-4/+5
| | | | | | Reviewed by: mat Approved by: mat (mentor) Differential Revision: https://reviews.freebsd.org/D10527
* Mark some ports failing on aarch64, and, in a few cases, other tier-2Mark Linimon2017-05-032-2/+7
| | | | | | | | archs. While here, pet portlint. Approved by: portmgr (tier-2 blanket)
* - Add LICENSEDmitry Marakasov2017-05-022-3/+7
| | | | | - Add NO_ARCH - Update WWW
* devel/boost-*: update to 1.64.0Jan Beich2017-05-0211-9/+11
| | | | | | | | Changes: http://www.boost.org/users/history/version_1_64_0.html PR: 218835 Approved by: office (bapt) Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D10472
* Update math/gsl to 2.3Tobias C. Berner2017-05-028-6/+113
| | | | | | | | | | | | | | | This release introduces some new features and fixes several bugs: http://savannah.gnu.org/forum/forum.php?forum_id=8751 * update to 2.3 and take maintainership * update math/py-gsl to 2.2.0 for gsl2 support * update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support PR: 218952 Exp-run by: antoine Reviewed by: mat, rakuco Approved by: rakuco (mentor) Differential Revision: https://reviews.freebsd.org/D10522
* science/iboview: new port. iboview is an advanced program for analyzing ↵Johannes M Dieterich2017-05-027-0/+113
| | | | | | | | molecular electronic structure. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10553
* Provide more descriptive error messages for ports failing on powerpc64.Mark Linimon2017-04-301-2/+2
| | | | | | While here, pet portlint. Approved by: portmgr (tier-2 blanket)
* Chase ffmpeg 3.3 update (ABI changes)Thomas Zander2017-04-252-2/+2
| | | | | PR: 218658 Submitted by: riggs
* - Update WWWDmitry Marakasov2017-04-231-1/+1
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* - localbaesDmitry Marakasov2017-04-211-5/+4
| | | | - Fix shebangs
* Add LICENSESunpoet Po-Chuan Hsieh2017-04-181-0/+5
| | | | | PR: 217786 Reported by: Anton Shterenlikht <mexas@bris.ac.uk>
* Add LICENSESunpoet Po-Chuan Hsieh2017-04-181-0/+5
| | | | | PR: 217786 Reported by: Anton Shterenlikht <mexas@bris.ac.uk>
* science/InsightToolkit: Fix build with clang 4.0Ben Woods2017-04-151-0/+11
| | | | | | | PR: 216617 Reported by: jbeich Obtained from: http://review.source.kitware.com/#/c/22043/ MFH: 2017Q2
* Update to 1.8.1Sunpoet Po-Chuan Hsieh2017-04-142-5/+5
| | | | Changes: https://code.zmaw.de/news/369
* - Sort out options (for instance, OPTIMIZED_CFLAGS does not belong to python ↵Dmitry Marakasov2017-04-121-28/+17
| | | | | | | | | slave port) - Add NO_ARCH for libsvm-python - Switch to PORTDOCS - Switch to options helpers - Cosmetic fixes
* science/vmd: unbreak buildDavid Naylor2017-04-046-43/+50
| | | | | - Remove patches that are not required with the new sources for stride - Add stride license test
* Update to 1.21.0Sunpoet Po-Chuan Hsieh2017-04-023-5/+5
| | | | | | - Update WWW Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* Bump PORTREVISIONs for ports depending on the canonical version of GCC andGerald Pfeifer2017-04-0137-32/+37
| | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms). This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using using Mk/bsd.octave.mk which in turn has USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang, c++11-lang, c++0x, c11, or gcc-c++11-lib. PR: 216707
* Update to 4.2.0Carlo Strub2017-03-303-186/+197
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* - Update devel/libpthread-stubs to 0.4Ashish SHUKLA2017-03-291-3/+3
| | | | | | | | - Chase libpthread-stubs update, and also switch to BUILD_DEPENDS from LIB_DEPENDS, as port is now only .pc file PR: 218015 Submitted by: rezny
* science/orthanc: Fix build with LibreSSLBernard Spil2017-03-261-0/+12
| | | | | | | | - LibreSSL removed FIPS support completely PR: 217352 Approved by: mp39590@gmail.com (maintainer) Obtained from: https://bitbucket.org/sjodogne/orthanc/pull-requests/4
* - Introduce couple of useful mathematical options and debugging supportAlexey Dokuchaev2017-03-201-3/+13
| | | | | | - Respect CFLAGS/CXXFLAGS (when building the port in release mode) PR: 204179
* - Update to 0.19.0Wen Heping2017-03-192-8/+7
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* - Update to 1.3.8.1Olivier Duchateau2017-03-052-5/+10
| | | | - Adjust dependencies
* - Update to 1.0.3Wen Heping2017-03-012-5/+4
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* - Bump PORTREVISION. Freepascal was updatedJose Alonso Cardenas Marquez2017-02-271-1/+2
| | | | - Take maintainership
* - Bump PORTREVISION. Freepascal was updatedJose Alonso Cardenas Marquez2017-02-271-2/+2
| | | | - Take maintainership
* science/py-netCDF4: Update version 1.2.4=>1.2.7Muhammad Moinur Rahman2017-02-262-5/+4
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* Update to 1.3.3Sunpoet Po-Chuan Hsieh2017-02-252-4/+4
| | | | Changes: https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
* Update to 1.3.3Sunpoet Po-Chuan Hsieh2017-02-252-5/+6
| | | | Changes: https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
* Update to 3.4.1.Vanilla I. Shu2017-02-222-4/+4
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* Update to 1.20.0Sunpoet Po-Chuan Hsieh2017-02-172-4/+4
| | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* Update to 1.8.0Sunpoet Po-Chuan Hsieh2017-02-175-22/+21
| | | | | | - Regenerate patch files with makepatch: Changes: https://code.zmaw.de/news/363
* Add GRIB_API optionSunpoet Po-Chuan Hsieh2017-02-121-1/+4
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* science/InsightToolkit: Fix pkg-plist post r433341Ben Woods2017-02-121-1/+0
| | | | Reported by: tcberner
* Re-enable the opthion for math/qhull.Thierry Thomas2017-02-082-6/+16
| | | | Don't bump PORTREVISION because it is not [yet] enabled by default.
* GDL version 0.9.7 was released on 21st January 2017, 6 days after theThierry Thomas2017-02-083-12/+9
| | | | | | | port was last updated to 0.9.7.v2 (which is older than 0.9.7). PR: 216828 Submitted by: woodsb02
* math/plplot: Update to 5.12.0Ben Woods2017-02-051-0/+1
| | | | | Changes this release: https://sourceforge.net/p/plplot/news/2017/01/plplot-5120-has-been-released/
* science/InsightToolkit: Update to 4.11.0Ben Woods2017-02-053-7/+28
| | | | | Changes this release: http://public.kitware.com/pipermail/insight-users/2017-January/054193.html
* Switch ports to use USE_PYQT=<foo> instead of using RUN_- and BUILD_DEPENDSTobias C. Berner2017-02-042-7/+6
| | | | | | | | | pyqt.mk provides USE_PYQT=<list> to depend on its components. Convert the ports not yet using it to it. Reviewed by: rakuco, mat Approved by: rakuco (mentor) Differential Revision: https://reviews.freebsd.org/D9261
* Add OPENMPI2 optionSunpoet Po-Chuan Hsieh2017-02-021-1/+5
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* add science/libgeodecomp - auto-parallelizing library for computer simulationsNikolai Lifanov2017-02-017-0/+279
| | | | | | | | | | | | | | | | | LibGeoDecomp (Library for Geometric Decomposition codes) is an auto-parallelizing library for computer simulations. It is specifically targeted computational science applications in the context of supercomputers and heterogeneous systems. The library eases development of such tightly coupled codes by essentially taking over the parallel programming: it handles both, the parallelization itself and parameter tuning. This enables scientists to focus on their simulation code, rather than the technical details of the parallel computer. PR: 213688 Submitted by: Kurt Kanzenbach <kurt@kmk-computers.de> Reviewed by: matthew Approved by: matthew (mentor) Differential Revision: https://reviews.freebsd.org/D9390
* Bump PORTREVISION for ports affected by the fix the last commit.Mathieu Arnold2017-02-011-1/+1
| | | | | Done with: Tools/scripts/bump-revision.sh Sponsored by: Absolight
* Update to 1.8.1Sunpoet Po-Chuan Hsieh2017-01-313-33/+13
| | | | Changes: http://trac.mcs.anl.gov/projects/parallel-netcdf/wiki/ReleaseNotes-1.8.1
* - With license framework, there's no longer need to shove license to docs, ↵Dmitry Marakasov2017-01-302-8/+1
| | | | pkgmessage and restricted
* Add JASPER and SZLIB optionsSunpoet Po-Chuan Hsieh2017-01-301-4/+12
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* Update to 2.2.24Sunpoet Po-Chuan Hsieh2017-01-262-4/+4
| | | | Changes: https://github.com/Unidata/UDUNITS-2/blob/master/CHANGE_LOG
* Update to 2.2.23Sunpoet Po-Chuan Hsieh2017-01-222-4/+4
| | | | Changes: https://github.com/Unidata/UDUNITS-2/blob/master/CHANGE_LOG
* science/openbabel: unbreak with GCC >= 6Jan Beich2017-01-221-0/+1
| | | | | | | GCC defaults to C++14 since 6.0 which no longer converts istream to bool by default. Instead of fixing just downgrade to C++98. PR: 216036
* Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/Sunpoet Po-Chuan Hsieh2017-01-211-1/+1
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* - Update to 2.0.4Dmitry Marakasov2017-01-204-50/+131
| | | | | PR: 216252 Submitted by: pfg@FreeBSD.org (maintainer)
* The output of tools like awk, date, sort, tr,... depends on the currentTijl Coosemans2017-01-181-1/+1
| | | | | | | | | | | | | | | | | | locale set by the user. Add LANG=C and LC_ALL=C at the beginning of bsd.port.mk and export them so all commands are executed with the C locale. LC_ALL=C overrides all other LC_* variables. LANG is used by setlocale(3) as default value for LC_* variables, so normally it isn't used when LC_ALL is set, but there's code out there that looks at LANG directly so it's safer to set it as well. The only commands not captured by this are != assignments before any inclusion of bsd.port.*mk. Introduce USE_LOCALE=<locale> that adds LANG=<locale> and LC_ALL=<locale> to CONFIGURE_ENV and MAKE_ENV so upstream build systems can be executed with a different locale (e.g. USE_LOCALE=en_US.UTF-8). PR: 215882 Exp-run by: antoine Approved by: portmgr (antoine)
* Change the site address.Thierry Thomas2017-01-172-3/+8
| | | | Since I'm there, explicit the dependencies.
* Upgrade GDL to 0.9.7v2.Thierry Thomas2017-01-162-4/+4
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* Update to 1.3.0Sunpoet Po-Chuan Hsieh2017-01-1312-244/+65
| | | | | | | | | | | - Update COMMENT - Update LICENSE_FILE - Add EXAMPLES option - Update pkg-descr - Update WWW - Bump PORTREVISION for dependent ports Changes: https://github.com/libkml/libkml/releases
* - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOLDmitry Marakasov2017-01-113-21/+2
| | | | Approved by: portmgr blanket
* Update to 2.2.21Sunpoet Po-Chuan Hsieh2017-01-112-3/+4
| | | | Changes: https://github.com/Unidata/UDUNITS-2/blob/master/CHANGE_LOG
* - Update to 5.2.0Wen Heping2017-01-109-655/+518
| | | | | | PR: 214684 Submitted by: yuri@rawbw.com Approved by: maintainer
* science/vmd: correct the wording of numpy keywordRuslan Makhmatkhanov2017-01-091-2/+2
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* science/vmd: fix port to depend on numpy.David Naylor2017-01-091-2/+3
| | | | Reported by: Ruslan Makhmatkhanov <cvs-src@yandex.ru>
* science/vmd: update to 1.9.3David Naylor2017-01-095-428/+520
| | | | | | | | | | | | | | | | | | | | - update MASTER_SITES to use upstream stride (the old - repackages - sources were no longer working). - take maintainership: although I don't use the software I am happy to respond to PR's and check for updates periodically, - add license information for each source: - vmd: custom license that requires the user to explicitly download (and accept the license before downloading). Mark the license as auto-accept here as the present of the DISTFILE will indicate that the license has been accepted - tachyon: standard 3-clause BSD license :-) - stride: almost BSD license, except only for academic use (i.e. non-commersial) and a requirement to report bugs to the author. Add a plain text copy of the license file to the port. - add missing dependencies: gl, x11 - fix detection of python. - simplify configure patch. - update pkg-plist for changes in plugin versions.
* Remove math/proj.4.Thierry Thomas2017-01-081-1/+1
| | | | | | math/libproj was already duplicated as graphics/proj. Reported by: sunpoet and cmt
* Upgrade to 0.9.7.Thierry Thomas2017-01-084-25/+35
| | | | | - improvement on X11 display speed through network - lot of minors bugs
* devel/boost-*: update to 1.63.0Jan Beich2017-01-068-8/+8
| | | | | | | | Changes: http://www.boost.org/users/history/version_1_63_0.html PR: 215598 Exp-run by: antoine Approved by: office (bapt) MFH: 2017Q1
* Never set WRKSRC when using USE_GITHUB.Mathieu Arnold2017-01-041-1/+1
| | | | | | | | | | If you want to set WRKSRC, set GH_PROJECT instead. - The GitHub URLs are case insensitive, but the distribution files you get out of them are not. - If the repository was renamed, the old URL will still work, but the distribution name will be ith the new name. Sponsored by: Absolight
* Cleanup BROKEN/IGNORE for 10.3-Mathieu Arnold2017-01-031-7/+1
| | | | Sponsored by: Absolight
* Update to 1.19.0Sunpoet Po-Chuan Hsieh2017-01-022-4/+4
| | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news
* science/rubygem-ruby-netcdf: update to 0.7.2Steve Wills2017-01-022-3/+4
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* Add libaec 1.0.0Sunpoet Po-Chuan Hsieh2017-01-016-0/+60
| | | | | | | | | | | | | | | | | | | | Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa. Libaec implements Golomb-Rice coding as defined in the Space Data System Standard documents 121.0-B-2 and 120.0-G-2. Libaec includes a free drop-in replacement for the SZIP library. Just replace SZIP's shared library libsz.so* with libaec.so* and libsz.so* from libaec. Code which is dynamically linked with SZIP such as HDF5 should continue to work with libaec. No re-compilation required. HDF5 files which contain SZIP encoded data can be decoded by HDF5 using libaec and vice versa. WWW: https://gitlab.dkrz.de/k202009/libaec
* Convert to options target helperSunpoet Po-Chuan Hsieh2017-01-011-1/+1
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* Update gchemutils to 0.14.16.Koop Mast2017-01-014-30/+10
| | | | Record indirect dependancies.
* - Update to 1.071Sunpoet Po-Chuan Hsieh2016-12-314-7/+8
| | | | | | - Add LICENSE - Sort PLIST - Remove Author line
* - Update to 1.10Wen Heping2016-12-292-4/+4
| | | | | PR: 215589 Submitted by: stb@lassitu.de(maintainer)
* - Update DESTDIR support: use usptream patch with modified MANDIR ↵Sunpoet Po-Chuan Hsieh2016-12-294-34/+32
| | | | | | | | (prefix/share/man -> prefix/man) - Update WWW: use https:// Obtained from: http://trac.mcs.anl.gov/projects/parallel-netcdf/changeset/2745
generated by cgit (git 2.34.1) at 2025-02-23 22:27:05 +0800