blob: de067fb8093b4cf7eadd51739f0d07ad8e409ecc (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
# Created by: Reed A. Cartwright <cartwright@asu.edu>
# $FreeBSD$
PORTNAME= bcftools
PORTVERSION= 1.6
CATEGORIES= biology
MAINTAINER= cartwright@asu.edu
COMMENT= Tools for manipulating next-generation sequencing data
LICENSE= MIT
# LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= htslib>=1.6:biology/htslib
LIB_DEPENDS= libhts.so:biology/htslib
TEST_DEPENDS= bash:shells/bash
CONFLICTS_BUILD=openssl
USE_GITHUB= yes
GH_ACCOUNT= samtools
USES= autoreconf gmake perl5 python:env shebangfix
USE_PERL5= test
GNU_CONFIGURE= yes
SUB_FILES= pkg-message
SHEBANG_FILES= misc/* test/test.pl
OPTIONS_DEFINE= GPL
GPL_DESC= Enable modules that rely on GPL code
OPTIONS_DEFAULT= GPL
GPL_LIB_DEPENDS= libgsl.so:math/gsl
.include <bsd.port.options.mk>
CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
.if ${PORT_OPTIONS:MGPL}
MAKE_ENV+= USE_GPL=1
LICENSE= GPLv3
.endif
TEST_TARGET= test
post-patch:
@${GREP} -q '@PORTVERSION@' ${WRKSRC}/configure.ac || (echo "@PORTVERSION@ in file/patch-configure.ac is overwritten probably due to using 'make makepatch'"; exit 1)
@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' ${WRKSRC}/configure.ac
.include <bsd.port.mk>
|
