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# New ports collection makefile for: biojava
# Date created: 15 September 2000
# Whom: FreeBSD Bio porters (bio@freebsd.net)
#
# $FreeBSD$
#
PORTNAME= biojava
DISTVERSION= 1.5-beta
PORTEPOCH= 1
CATEGORIES= biology java
MASTER_SITES= http://www.biojava.org/download/bj15b/all/:source \
http://www.biojava.org/download/bj15b/bin/:bin
DISTFILES= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX}:source \
bytecode.jar:bin
EXTRACT_ONLY= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX}
MAINTAINER= ports@FreeBSD.org
COMMENT= Open-source java tools for processing biological data
BUILD_DEPENDS= ${JAVALIBDIR}/hsqldb.jar:${PORTSDIR}/databases/hsqldb \
${JAVALIBDIR}/commons-dbcp.jar:${PORTSDIR}/java/jakarta-commons-dbcp \
${JAVALIBDIR}/commons-pool.jar:${PORTSDIR}/java/jakarta-commons-pool
RUN_DEPENDS= ${JAVALIBDIR}/hsqldb.jar:${PORTSDIR}/databases/hsqldb \
${JAVALIBDIR}/xml-apis.jar:${PORTSDIR}/textproc/xerces-j \
${JAVALIBDIR}/jakarta-regexp.jar:${PORTSDIR}/java/jakarta-regexp \
${JAVALIBDIR}/commons-cli.jar:${PORTSDIR}/java/jakarta-commons-cli \
${JAVALIBDIR}/commons-dbcp.jar:${PORTSDIR}/java/jakarta-commons-dbcp \
${JAVALIBDIR}/commons-pool.jar:${PORTSDIR}/java/jakarta-commons-pool \
${JAVALIBDIR}/commons-collections.jar:${PORTSDIR}/java/jakarta-commons-collections
.if !defined(WITHOUT_TESTS)
BUILD_DEPENDS+= ${JAVALIBDIR}/junit.jar:${PORTSDIR}/java/junit
.endif
BROKEN= Does not build
DEPRECATED= ${BROKEN}
EXPIRATION_DATE=2007-04-10
USE_JAVA= yes
JAVA_VERSION= 1.4+
USE_ANT= yes
MAKE_ENV= CLASSPATH="${JAVALIBDIR}"
ALL_TARGET= compile-apps
PLIST_SUB+= VER=${DISTVERSION}
JARFILES= apps-${DISTVERSION}.jar biojava.jar bytecode.jar
PORTDOCS= biojava
SAMPLES= demos
.if !defined(NOPORTDOCS)
ALL_TARGET+= javadocs-biojava
.endif
.if !defined(WITHOUT_SAMPLES)
ALL_TARGET+= compile-demos
PLIST_SUB+= INSTEX=""
.else
PLIST_SUB+= INSTEX="@comment "
.endif
post-extract:
${CP} ${_DISTDIR}/bytecode.jar ${WRKSRC}
.if !defined(WITHOUT_TESTS)
regression-test:
@(cd ${BUILD_WRKSRC}; \
${SETENV} ${MAKE_ENV} ${ANT} ${MAKE_ARGS} runtests)
.endif
# from textproc/xerces-j
do-install:
@${ECHO_MSG} -n ">> Installing JAR files in ${JAVAJARDIR}..."
@${MKDIR} ${JAVAJARDIR}
.for JARFILE in ${JARFILES}
@cd ${WRKSRC}/ant-build && ${INSTALL_DATA} ${JARFILE} ${JAVAJARDIR}/${JARFILE}
@${ECHO_MSG} -n " ${JARFILE}"
.endfor
@${ECHO_MSG} " [ DONE ]"
.if !defined(NOPORTDOCS)
@${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..."
@${MKDIR} ${DOCSDIR}
@${INSTALL_DATA} ${WRKSRC}/LICENSE ${DOCSDIR}
@${INSTALL_DATA} ${WRKSRC}/README ${DOCSDIR}
@cd ${WRKSRC}/ant-build/docs && \
${FIND} ${PORTDOCS} -type d -exec ${MKDIR} "${DOCSDIR}/{}" \; && \
${FIND} ${PORTDOCS} -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \;
@${ECHO_MSG} " [ DONE ]"
.endif
.if !defined(WITHOUT_SAMPLES)
@${ECHO_MSG} -n ">> Installing demos in ${EXAMPLESDIR}..."
cd ${WRKSRC} && \
${FIND} ${SAMPLES} -type d -exec ${MKDIR} "${EXAMPLESDIR}/{}" \; && \
${FIND} ${SAMPLES} -not -type d -exec ${INSTALL_DATA} "{}" "${EXAMPLESDIR}/{}" \;
@${ECHO_MSG} " [ DONE ]"
.endif
post-install:
.if !defined(BATCH)
@${ECHO_MSG} ""
@${ECHO_MSG} "Libraries installed at: ${JAVAJARDIR}"
@${ECHO_MSG} "You should edit your CLASSPATH to include the jar files"
@${ECHO_MSG} "in this directory."
@${ECHO_MSG} ""
@${ECHO_MSG} "Docs and demos are installed in:"
@${ECHO_MSG} "${DOCSDIR}"
@${ECHO_MSG} ""
.endif
.include <bsd.port.mk>
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