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# $FreeBSD$
PORTNAME= bowtie2
PORTVERSION= 2.3.3.1
DISTVERSIONPREFIX= v
PORTREVISION= 2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Ultrafast, memory-efficient short read aligner
LICENSE= GPLv3+
LICENSE_FILE= ${WRKSRC}/LICENSE
# May also work on other 64-bit platforms, but untested
ONLY_FOR_ARCHS= amd64
LIB_DEPENDS= libtbb.so:devel/tbb
USES= gmake perl5 python shebangfix
USE_PERL5= run
SHEBANG_FILES= bowtie2-build bowtie2-inspect scripts/*.pl
USE_GITHUB= yes
GH_ACCOUNT= BenLangmead
OPTIONS_DEFINE= DOCS EXAMPLES
post-install:
${MKDIR} ${STAGEDIR}${DATADIR}/scripts
${INSTALL_PROGRAM} \
${WRKSRC}/bowtie2*-s \
${WRKSRC}/bowtie2*-l \
${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} \
${WRKSRC}/scripts/*.sh \
${WRKSRC}/scripts/*.pl \
${STAGEDIR}${DATADIR}/scripts
post-install-DOCS-on:
(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
post-install-EXAMPLES-on:
(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
.include <bsd.port.mk>
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