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# New ports collection makefile for: dna-qc
# Date created: 25 Novemeber 2001
# Whom: Tony Maher <tonym@biolateral.com.au>
#
# $FreeBSD$
#
PORTNAME= dna-qc
PORTVERSION= 1993.07.26
CATEGORIES= biology
MASTER_SITES= ftp://ftp.tigr.org/pub/software/qc/
DISTNAME= qc
EXTRACT_SUFX= .tar.Z
MAINTAINER= tonym@biolateral.com.au
COMMENT= A quality control algorithm for DNA sequencing projects
NO_WRKSUBDIR= true
USE_REINPLACE= yes
EXAMPLES= README script.compare script.limits \
bact.all chromosomeIII.all human.all worm.all
PROGRAMS= counter hybridize normalize random_clip random_line
.include <bsd.port.pre.mk>
.if ${ARCH} == "alpha" && ${OSVERSION} >= 502102
BROKEN= "Does not compile"
.endif
post-patch:
@${REINPLACE_CMD} -e 's,^CFLAGS,#CFLAGS,' ${WRKSRC}/Makefile
@${REINPLACE_CMD} -e 's,malloc.h,stdlib.h,' ${WRKSRC}/normalize.c
@${REINPLACE_CMD} -e 's,fname\*,fname,' ${WRKSRC}/random_line.c
@${REINPLACE_CMD} -e 's,static void allocate_pool,void allocate_pool,' \
${WRKSRC}/stringpool.c
do-install:
.for file in ${PROGRAMS}
${INSTALL_PROGRAM} ${WRKSRC}/${file} ${PREFIX}/bin
${STRIP_CMD} ${PREFIX}/bin/${file}
.endfor
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/qc_doc/* ${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/surprize_doc/* ${DOCSDIR}
@${MKDIR} ${EXAMPLESDIR}
.for file in ${EXAMPLES}
${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR}
.endfor
.endif
.include <bsd.port.post.mk>
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