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PORTNAME= gemma
DISTVERSION= 0.98.3
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Genome-wide Efficient Mixed Model Association
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libgsl.so:math/gsl
USES= blaslapack:openblas compiler:c++11-lang eigen:3 gmake \
localbase:ldflags
USE_GITHUB= yes
GH_ACCOUNT= genetics-statistics
GH_PROJECT= GEMMA
MAKEFILE= ${FILESDIR}/Makefile
# Assuming openblas is built with pthreads, not openmp
CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -pthread
LDFLAGS+= -lopenblas -pthread
OPTIONS_DEFINE= EXAMPLES
pre-configure:
@${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh
do-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
do-test:
(cd ${WRKSRC}/test && ${SH} test_suite.sh)
.include <bsd.port.mk>
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