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# Created by: barnhart@genetics.wustl.edu
# $FreeBSD$
PORTNAME= hmmer
PORTVERSION= 3.0
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \
http://selab.janelia.org/software/hmmer3/3.0/
MAINTAINER= bacon4000@gmail.com
COMMENT= Profile hidden Markov models for biological sequence analysis
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
GNU_CONFIGURE= yes
USES= perl5
CONFIGURE_ARGS+=--enable-threads
DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf
EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \
HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \
Pkinase.hmm fn3.out globins4.out minifam minifam.h3m
OPTIONS_DEFINE= DOCS EXAMPLES
.include <bsd.port.options.mk>
# HMMER is useless without SSE and any PC in use today should support it
# Should probably also do enable-vmx on Power processors to enable
# Altivec/VMX, but I don't have a machine to test this.
.if ${ARCH} == "amd64" || ${ARCH} == "ia64" || ${ARCH} == "i386"
CONFIGURE_ARGS+=--enable-sse
.endif
post-install:
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
(cd ${WRKSRC}/documentation/man; for i in *.man; do \
${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \
done)
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
.include <bsd.port.mk>
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