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--- ./makefile.orig 2009-06-02 17:45:34.000000000 +0200
+++ ./makefile 2014-08-02 12:43:45.000000000 +0200
@@ -25,8 +25,8 @@
# Makefile for swat, phrap, cross_match, phrapview; also swprobs (currently inactivated)
#CC= icc
#CFLAGS= -O2 -wd266,880
-CC= cc
-CFLAGS= -O2
+CC?= cc
+#CFLAGS= -O2
LFLAGS= -lm
SWATOBJS= swat.o weibull.o
@@ -55,7 +55,7 @@
CALFOBJS= calf_merge.o calf_utils.o
-all: swat phrap cross_match phrapview cluster loco calf_merge
+all: swat phrap cross_match phrapview pcluster loco calf_merge
#manyreads:
# touch swat.h;
@@ -131,9 +131,9 @@
$(CC) $(CFLAGS) -o $@ gccross_match.o gccall_subs.o $(CROBJS) $(SCANOBJS) $(SWOBJS) $(JKBSWOBJS) $(LFLAGS)
chmod o-r gccross_match
-cluster: makefile $(CLOBJS) call_subs.o $(SCANOBJS) $(SWOBJS)
+pcluster: makefile $(CLOBJS) call_subs.o $(SCANOBJS) $(SWOBJS)
$(CC) $(CFLAGS) -o $@ $(CLOBJS) call_subs.o $(SCANOBJS) $(SWOBJS) $(LFLAGS)
- chmod o-r cluster
+ chmod o-r pcluster
loco: makefile $(LOCOOBJS) $(SWOBJS)
$(CC) $(CFLAGS) -o $@ $(LOCOOBJS) $(SWOBJS) $(LFLAGS)
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