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--- makefile.orig 1999-03-11 15:13:20.000000000 +0900
+++ makefile 2007-12-11 13:19:39.000000000 +0900
@@ -23,8 +23,8 @@
#*****************************************************************************/
# Makefile for swat, phrap, cross_match, phrapview; also swprobs (currently inactivated)
-CC= cc
-CFLAGS= -O2
+CC?= cc
+#CFLAGS= -O2
LFLAGS= -lm
SWATOBJS= swat.o weibull.o
@@ -55,11 +55,11 @@
manyreads:
touch swat.h;
- make CFLAGS="-O2 -DMANYREADS" phrap cross_match;
+ make CFLAGS="$(CFLAGS) -DMANYREADS" phrap cross_match;
mv phrap phrap.manyreads;
mv cross_match cross_match.manyreads;
touch swat.h;
- make CFLAGS="-O2 -DLONGREADS" phrap;
+ make CFLAGS="$(CFLAGS) -DLONGREADS" phrap;
mv phrap phrap.longreads;
touch swat.h;
make phrap cross_match;
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