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--- ./pairs.c.orig 2009-04-23 00:12:20.000000000 +0200
+++ ./pairs.c 2014-08-02 12:39:30.000000000 +0200
@@ -37,6 +37,16 @@
int single_domain;
double mask_frac;
+void revise_qd_scores(Query_domain *);
+void visit_cand_pairs_scores( Cand_pair *);
+void merge_qds(Database *, int);
+void init_qd_trims(Query_domain *);
+void test_qd1_merges(Query_domain *, Query_domain *);
+void test_qd2_merges(Query_domain *, Query_domain *);
+void compare_query_domains(Query_domain *, Query_domain *);
+void print_score_list(int, Query_domain *);
+void print_pair(Aligned_pair *, FILE *, int);
+
set_domain_vars()
{
single_domain = parameters->masklevel == 0 || parameters->masklevel == 101;
@@ -697,6 +707,7 @@
*/
}
+void
visit_cand_pairs_scores(cand_pair)
Cand_pair *cand_pair;
{
@@ -1423,6 +1434,7 @@
int trim_flag;
+void
merge_qds(db, t_f)
Database *db;
int t_f;
@@ -1463,6 +1475,7 @@
}
}
+void
init_qd_trims(query_domain)
Query_domain *query_domain;
{
@@ -1476,6 +1489,7 @@
init_qd_trims(query_domain->child[1]);
}
+void
test_qd1_merges(query_domain1, query_domain2)
Query_domain *query_domain1, *query_domain2;
{
@@ -1486,6 +1500,7 @@
test_qd1_merges(query_domain1->child[1], query_domain2);
}
+void
test_qd2_merges(query_domain1, query_domain2)
Query_domain *query_domain1, *query_domain2;
{
@@ -1533,6 +1548,7 @@
}
}
+void
compare_query_domains(query_domain1, query_domain2)
Query_domain *query_domain1, *query_domain2;
{
@@ -1570,6 +1586,7 @@
}
}
+void
print_score_list(entry, query_domain)
int entry;
Query_domain *query_domain;
@@ -1732,6 +1749,7 @@
}
}
+void
print_pair(pair, fp, no_zero)
Aligned_pair *pair;
FILE *fp;
@@ -4125,6 +4143,7 @@
notify("done");
}
+void
revise_qd_scores(query_domain)
Query_domain *query_domain;
{
|
