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--- ./readin.c.orig 2008-11-11 20:33:41.000000000 +0100 +++ ./readin.c 2014-08-02 12:39:30.000000000 +0200 @@ -31,6 +31,7 @@ /* read in sequence files, initialize array of aligned read info, and log file of ancillary information, and find pairwise matches */ +void readin_and_match() { File *file;