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# Created by: Eric van Gyzen <vangyzen@stat.duke.edu>
# $FreeBSD$
PORTNAME= mcmc-jags
DISTVERSION= 4.3.0
PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= SF/mcmc-jags/JAGS/${S}.x/Source/:1 \
SF/mcmc-jags/Examples/${S}.x/:2 \
SF/mcmc-jags/Manuals/2.x/:3 \
SF/mcmc-jags/Manuals/${S}.x/:4
DISTFILES= JAGS-${PORTVERSION}${EXTRACT_SUFX}:1
DIST_SUBDIR= ${PORTNAME}
EXTRACT_ONLY= ${DISTFILES:M*[12]:C|:.*||}
MAINTAINER= ports@FreeBSD.org
COMMENT= Just Another Gibbs Sampler
LICENSE= GPLv2
LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libltdl.so:devel/libltdl
GNU_CONFIGURE= yes
USES= bison compiler:features fortran gmake libtool localbase pathfix
USE_GCC= yes
USE_LDCONFIG= yes
INSTALL_TARGET= install-strip
WRKSRC= ${WRKDIR}/JAGS-${PORTVERSION}
OPTIONS_SINGLE= BLAS
OPTIONS_SINGLE_BLAS= ATLAS OPENBLAS NETLIB
OPTIONS_DEFAULT+= OPENBLAS
ATLAS_USES= blaslapack:atlas
ATLAS_VARS= MANUAL_PACKAGE_BUILD=\
"Choose a BLAS option other than ATLAS for package building."
NETLIB_USES= blaslapack:netlib
OPENBLAS_USES= blaslapack:openblas
DOCS_DISTFILES= jags_developer_manual.pdf:3 jags_installation_manual.pdf:4 \
jags_user_manual.pdf:4
DOCS_PORTDOCS= ${DISTFILES:M*[34]:C|:.*||}
EXAMPLES_DISTFILES= classic-bugs.tar.gz:2
EXAMPLES_PORTEXAMPLES= *
CONFIGURE_ARGS+= --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \
--with-lapack="${LAPACKLIB}"
OPTIONS_SUB= YES
PLIST_SUB= MODULEVERSION=${S}
S= ${PORTVERSION:C|\..*||}
OPTIONS_DEFINE= DOCS EXAMPLES
post-patch:
@${REINPLACE_CMD} \
-e '/@WINDOWS_FALSE@bin_SCRIPTS =/s/jags/mcmc-&/' \
-e '/CLEANFILES =/s/jags/mcmc-&/' \
-e '/@WINDOWS_FALSE@jags:/s/jags/mcmc-&/' \
-e '/@WINDOWS_FALSE@.*rm -f jags/s/jags/mcmc-&/' \
-e '/@WINDOWS_FALSE@.*mv jags.tmp jags/s/jags/mcmc-&/2' \
${WRKSRC}/src/terminal/Makefile.in
post-patch-EXAMPLES-on:
@${SED} -i '' -e '\|JAGS ?=|{s|jags|mcmc-&|;s|/usr/local|${PREFIX}|;}' \
${WRKDIR}/classic-bugs/vol[12]/Makefile
post-install-DOCS-on:
@${MKDIR} ${STAGEDIR}${DOCSDIR}
@cd ${_DISTDIR}; ${INSTALL_DATA} ${PORTDOCS} ${STAGEDIR}${DOCSDIR}
post-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
@cd ${WRKDIR}/classic-bugs; ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR}
.if defined(MAINTAINER_MODE)
BUILD_DEPENDS+= ${LOCALBASE}/lib/R/library/coda/R/coda.rdb:math/R-cran-coda
check test: install
.for i in 1 2
@cd ${WRKDIR}/classic-bugs/vol${i}; ${SETENV} ${MAKE_ENV} \
${MAKE_CMD} ${MAKE_ARGS} check
.endfor
@${FIND} ${WRKDIR}/classic-bugs -type f -name check.log | ${SORT} | \
${XARGS} -tI @ ${CAT} @
.endif
.include <bsd.port.mk>
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