- Added new patches to support building under gcc 4.5 due to impending

  default gcc version change when USE_FORTRAN=yes. Patches included from
  http://bugs.gentoo.org/show_bug.cgi?id=318045. [1]

- Renamed and conditionalized some patches to support tgammaf function
  on OSVERSION < 800023.  Previously, it was included even when present
  in the system math library.  Also fixed name-mangling problem in the
  patches.  Declarations were wrapped in 'extern "C"', but the
  definitions were not, causing a linker error.

- Added a patch to CMakeLists.txt to prevent cmake from changing rpath
  during the installation phase.  That caused libstdc++ from /usr/lib
  to be used instead of the one supplied with gcc 4.5.

Requested by:	gerald [1]

9 files changed, 294 insertions, 25 deletions

diff --git a/math/freemat/Makefile b/math/freemat/Makefile
index c587d092f82..8e3f8253985 100644
--- a/math/freemat/Makefile
+++ b/math/freemat/Makefile
@@ -23,6 +23,8 @@ LIB_DEPENDS=		lapack.4:${PORTSDIR}/math/lapack	\
 			pcre.0:${PORTSDIR}/devel/pcre
 BUILD_DEPENDS=		pkg-config:${PORTSDIR}/devel/pkg-config
 
+LICENSE=		GPLv2
+
 WRKSRC=			${WRKDIR}/${PORTNAME}-${PORTVERSION}.1${DISTVERSIONSUFFIX}
 
 .ifdef WITH_MPI
@@ -62,6 +64,13 @@ LIB_DEPENDS+=	portaudio.0:${PORTSDIR}/audio/portaudio
 
 .include <bsd.port.pre.mk>
 
+.if ${OSVERSION} < 800023
+# Add math functions that didn't exist until 8.x
+EXTRA_PATCHES+=	${FILESDIR}/extra-patch-libs__libFN__CMakeLists.txt \
+		${FILESDIR}/extra-patch-libs__libFN__mathfunc4.cpp \
+		${FILESDIR}/extra-patch-libs__libFN__FNFun.cpp
+.endif
+
 .if exists(${LOCALBASE}/lib/libatlas_r.so) && !defined(WITH_BLAS)
 WITH_ATLAS=	yes
 .endif
@@ -101,11 +110,11 @@ post-extract:
 	@cd ${WRKSRC} && ${FIND} . -name \*.moc.cpp -delete
 
 pre-configure:
-	${RM} ${WRKSRC}/CMakeCache.txt
+	@${RM} ${WRKSRC}/CMakeCache.txt
 
 # Avoid conflict with QT3
 post-configure:
-	${FIND} ${WRKSRC} -name Makefile | ${XARGS}	\
+	@${FIND} ${WRKSRC} -name Makefile | ${XARGS}	\
 		${REINPLACE_CMD} -e '/^QT_CFLAGS/s|-I${LOCALBASE}/include ||'
 
 post-install:
diff --git a/math/freemat/files/extra-patch-libs__libFN__CMakeLists.txt b/math/freemat/files/extra-patch-libs__libFN__CMakeLists.txt
new file mode 100644
index 00000000000..f6ad2eaeb73
--- /dev/null
+++ b/math/freemat/files/extra-patch-libs__libFN__CMakeLists.txt
@@ -0,0 +1,13 @@
+--- ./libs/libFN/CMakeLists.txt.orig	2009-10-09 02:23:29.000000000 -0400
++++ ./libs/libFN/CMakeLists.txt	2010-09-22 15:28:57.000000000 -0400
+@@ -13,6 +13,10 @@
+ 	 mathfunc4.cpp

+   )

+ ENDIF( MSVC )

++
++SET(LIBM_FILES
++	mathfunc4.cpp
++)
+ 

+ ADD_LIBRARY( FN

+ FNFun.cpp 

diff --git a/math/freemat/files/patch-libs__libFN__FNFun.cpp b/math/freemat/files/extra-patch-libs__libFN__FNFun.cpp
index 6e8498d5f61..7290b5b51a4 100644
--- a/math/freemat/files/patch-libs__libFN__FNFun.cpp
+++ b/math/freemat/files/extra-patch-libs__libFN__FNFun.cpp
@@ -1,17 +1,17 @@
---- ./libs/libFN/FNFun.cpp.orig	2009-11-14 18:51:06.000000000 -0500
-+++ ./libs/libFN/FNFun.cpp	2009-11-14 20:26:43.000000000 -0500
+--- ./libs/libFN/FNFun.cpp.orig	2009-10-09 02:23:29.000000000 -0400
++++ ./libs/libFN/FNFun.cpp	2010-09-22 15:29:22.000000000 -0400
 @@ -35,6 +35,14 @@
  	double trunc( double x );
  	float truncf( float x );
  #endif 
-+#if defined(__FreeBSD__)
 +#ifdef __cplusplus
 +extern "C" {
++#endif
 +    float lgammaf(float x);
 +    float tgammaf(float x);
++#ifdef __cplusplus
 +}
 +#endif
-+#endif
  
  //!
  //@Module ERFC Complimentary Error Function
diff --git a/math/freemat/files/extra-patch-libs__libFN__mathfunc4.cpp b/math/freemat/files/extra-patch-libs__libFN__mathfunc4.cpp
new file mode 100644
index 00000000000..a610ee84eae
--- /dev/null
+++ b/math/freemat/files/extra-patch-libs__libFN__mathfunc4.cpp
@@ -0,0 +1,37 @@
+--- ./libs/libFN/mathfunc4.cpp.orig	2010-09-22 15:28:16.000000000 -0400
++++ ./libs/libFN/mathfunc4.cpp	2010-09-22 15:27:09.000000000 -0400
+@@ -248,11 +248,17 @@
+ 	return r;

+ }

+ 

++#ifdef __cplusplus
++extern "C" {
++#endif
+ float lgammaf(float x)

+ {

+   int local_signgam;

+   return lgammaf_r(x, &local_signgam/*(_REENT_SIGNGAM(_REENT))*/);

+ }

++#ifdef __cplusplus
++}
++#endif
+ 

+ float gammaf_r(float x, int *signgamp)

+ {

+@@ -264,6 +270,9 @@
+   return gammaf_r(x, &(_REENT_SIGNGAM(_REENT)));

+ }*/

+ 

++#ifdef __cplusplus
++extern "C" {
++#endif
+ float tgammaf(float x)

+ {

+         float y;

+@@ -272,3 +281,6 @@
+         if (local_signgam < 0) y = -y;

+         return y;

+ }

++#ifdef __cplusplus
++}
++#endif
diff --git a/math/freemat/files/patch-CMakeLists.txt b/math/freemat/files/patch-CMakeLists.txt
index def3f6b672a..459ee0fc511 100644
--- a/math/freemat/files/patch-CMakeLists.txt
+++ b/math/freemat/files/patch-CMakeLists.txt
@@ -1,6 +1,27 @@
---- ./CMakeLists.txt.orig	2009-11-13 18:28:43.000000000 -0500
-+++ ./CMakeLists.txt	2009-11-13 19:28:04.000000000 -0500
-@@ -217,7 +217,7 @@
+--- CMakeLists.txt.orig	2009-10-09 02:24:39.000000000 -0400
++++ CMakeLists.txt	2010-09-23 15:07:03.000000000 -0400
+@@ -15,6 +15,20 @@
+ 

+ PROJECT(FreeMat CXX C )

+ 

++# skip the full RPATH for the build tree
++SET(CMAKE_SKIP_BUILD_RPATH  TRUE)
++
++# when building, use the install RPATH already
++# (so it doesn't need to relink when installing)
++SET(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE) 
++
++# the RPATH to be used when installing
++SET(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
++
++# add the automatically determined parts of the RPATH
++# which point to directories outside the build tree to the install RPATH
++SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
++#
+ SET(CPACK_PACKAGE_VERSION_MAJOR "4")

+ SET(CPACK_PACKAGE_VERSION_MINOR "0")

+ SET(VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}")

+@@ -217,7 +231,7 @@
    INCLUDE_DIRECTORIES(${PORTAUDIO_SYS_INCLUDE_DIR})

    SET (PORTAUDIO_LIBRARY ${PORTAUDIO_SYS_LIBRARY})

  ENDIF (FORCE_BUNDLED_PORTAUDIO OR NOT SYSTEM_PORTAUDIO_AVAILABLE)

@@ -9,7 +30,7 @@
  SET(OPTIONAL_LIBS ${OPTIONAL_LIBS} ${PORTAUDIO_LIBRARY})

  IF (APPLE)

     FIND_LIBRARY(COREAUDIO_LIBRARY CoreAudio)

-@@ -245,7 +245,7 @@
+@@ -245,7 +259,7 @@
  ######################################################################

  # LLVM Support

  ######################################################################

diff --git a/math/freemat/files/patch-libs__libFN__CMakeLists.txt b/math/freemat/files/patch-libs__libFN__CMakeLists.txt
deleted file mode 100644
index 85fdf248f44..00000000000
--- a/math/freemat/files/patch-libs__libFN__CMakeLists.txt
+++ /dev/null
@@ -1,15 +0,0 @@
---- ./libs/libFN/CMakeLists.txt.orig	2009-11-13 20:28:30.000000000 -0500
-+++ ./libs/libFN/CMakeLists.txt	2009-11-13 22:38:43.000000000 -0500
-@@ -13,6 +13,12 @@
- 	 mathfunc4.cpp

-   )

- ENDIF( MSVC )

-+
-+IF (${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD")
-+  SET(LIBM_FILES
-+	mathfunc4.cpp
-+  )
-+ENDIF(${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD")
- 

- ADD_LIBRARY( FN

- FNFun.cpp 

diff --git a/math/freemat/files/patch-libs__libFreeMat__Array.cpp b/math/freemat/files/patch-libs__libFreeMat__Array.cpp
new file mode 100644
index 00000000000..e1314fe1c95
--- /dev/null
+++ b/math/freemat/files/patch-libs__libFreeMat__Array.cpp
@@ -0,0 +1,11 @@
+--- ./libs/libFreeMat/Array.cpp.orig	2009-10-09 02:24:20.000000000 -0400
++++ ./libs/libFreeMat/Array.cpp	2010-09-21 14:32:02.000000000 -0400
+@@ -465,7 +465,7 @@
+ 
+ void Array::set(const QString& field, ArrayVector& data) {
+   if (isEmpty() && m_type.Class != Struct)
+-    *this = Array::Array(Struct);
++    *this = Array(Struct);
+   if (m_type.Class != Struct) throw Exception("Unsupported type for A.field=B");
+   StructArray &rp(structPtr());
+   if (isEmpty()) 
diff --git a/math/freemat/files/patch-libs__libFreeMat__Math.cpp b/math/freemat/files/patch-libs__libFreeMat__Math.cpp
new file mode 100644
index 00000000000..bde8b1271b6
--- /dev/null
+++ b/math/freemat/files/patch-libs__libFreeMat__Math.cpp
@@ -0,0 +1,14 @@
+--- ./libs/libFreeMat/Math.cpp.orig	2009-10-09 02:24:22.000000000 -0400
++++ ./libs/libFreeMat/Math.cpp	2010-09-21 14:32:02.000000000 -0400
+@@ -1590,9 +1590,9 @@
+ 
+ Array Not(const Array& A) {
+   if (A.isScalar())
+-    return Array::Array(!A.toClass(Bool).constRealScalar<bool>());
++    return Array(!A.toClass(Bool).constRealScalar<bool>());
+   const Array &Abool(A.toClass(Bool));
+-  return Array::Array(Apply(Abool.constReal<bool>(),notfunc));
++  return Array(Apply(Abool.constReal<bool>(),notfunc));
+ }
+ 
+ Array Plus(const Array& A) {
diff --git a/math/freemat/files/patch-libs__libFreeMat__Operators.hpp b/math/freemat/files/patch-libs__libFreeMat__Operators.hpp
new file mode 100644
index 00000000000..485fe70d27b
--- /dev/null
+++ b/math/freemat/files/patch-libs__libFreeMat__Operators.hpp
@@ -0,0 +1,179 @@
+--- ./libs/libFreeMat/Operators.hpp.orig	2009-10-09 02:24:22.000000000 -0400
++++ ./libs/libFreeMat/Operators.hpp	2010-09-21 14:32:02.000000000 -0400
+@@ -142,11 +142,11 @@
+   if (!Bcast.isScalar()) Bcast = Bcast.asDenseArray();
+   if (Acast.isScalar() && Bcast.isScalar()) {
+     if (Acast.allReal() && Bcast.allReal()) {
+-      F = Array::Array(Op::func(Acast.constRealScalar<T>(),
++      F = Array(Op::func(Acast.constRealScalar<T>(),
+ 				Bcast.constRealScalar<T>()));
+     } else {
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(T(0),T(0));
++      F = Array(T(0),T(0));
+       Op::func(Acast.constRealScalar<T>(),
+ 	       Acast.constImagScalar<T>(),
+ 	       Bcast.constRealScalar<T>(),
+@@ -155,7 +155,7 @@
+     }
+   } else if (Acast.isScalar()) {
+     if (Acast.allReal() && Bcast.allReal()) {
+-      F = Array::Array(Tclass,Bcast.dimensions());
++      F = Array(Tclass,Bcast.dimensions());
+       T* ret = F.real<T>().data();
+       const T& Ap = Acast.constRealScalar<T>();
+       const T* Bp = Bcast.constReal<T>().constData();
+@@ -163,7 +163,7 @@
+       for (uint64 i=0;i<q;i++) ret[i] = Op::func(Ap,Bp[i]);
+     } else {
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(Tclass,Bcast.dimensions());
++      F = Array(Tclass,Bcast.dimensions());
+       T* Cr = F.real<T>().data();
+       T* Ci = F.imag<T>().data();
+       const T& Ar = Acast.constRealScalar<T>();
+@@ -175,7 +175,7 @@
+     }
+   } else if (Bcast.isScalar()) {
+     if (Bcast.allReal() && Acast.allReal()) {
+-      F = Array::Array(Tclass,Acast.dimensions());
++      F = Array(Tclass,Acast.dimensions());
+       T* ret = F.real<T>().data();
+       const T* Ap = Acast.constReal<T>().constData();
+       const T& Bp = Bcast.constRealScalar<T>();
+@@ -183,7 +183,7 @@
+       for (uint64 i=0;i<q;i++) ret[i] = Op::func(Ap[i],Bp);
+     } else { 
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(Tclass,Acast.dimensions());
++      F = Array(Tclass,Acast.dimensions());
+       T* Cr = F.real<T>().data();
+       T* Ci = F.imag<T>().data();
+       const T* Ar = Acast.constReal<T>().constData();
+@@ -197,7 +197,7 @@
+     if (Acast.dimensions() != Bcast.dimensions())
+       throw Exception("size mismatch in arguments to binary operator");
+     if (Bcast.allReal() && Acast.allReal()) {
+-      F = Array::Array(Tclass,Acast.dimensions());
++      F = Array(Tclass,Acast.dimensions());
+       T* ret = F.real<T>().data();
+       const T* Ap = Acast.constReal<T>().constData();
+       const T* Bp = Bcast.constReal<T>().constData();
+@@ -205,7 +205,7 @@
+       for (uint64 i=0;i<q;i++) ret[i] = Op::func(Ap[i],Bp[i]);
+     } else {
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(Tclass,Acast.dimensions());
++      F = Array(Tclass,Acast.dimensions());
+       T* Cr = F.real<T>().data();
+       T* Ci = F.imag<T>().data();
+       const T* Ar = Acast.constReal<T>().constData();
+@@ -328,17 +328,17 @@
+   if (!Acast.isScalar()) Acast = Acast.asDenseArray();
+   if (!Bcast.isScalar()) Bcast = Bcast.asDenseArray();
+   if (Acast.isScalar() && Bcast.isScalar()) {
+-    F = Array::Array(Op::func(Acast.constRealScalar<T>(),
++    F = Array(Op::func(Acast.constRealScalar<T>(),
+ 			      Bcast.constRealScalar<T>()));
+   } else if (Acast.isScalar()) {
+-    F = Array::Array(Bool,Bcast.dimensions());
++    F = Array(Bool,Bcast.dimensions());
+     bool* ret = F.real<bool>().data();
+     const T& Ap = Acast.constRealScalar<T>();
+     const T* Bp = Bcast.constReal<T>().constData();
+     uint64 q = uint64(Bcast.length());
+     for (uint64 i=0;i<q;i++) ret[i] = Op::func(Ap,Bp[i]);
+   } else if (Bcast.isScalar()) {
+-    F = Array::Array(Bool,Acast.dimensions());
++    F = Array(Bool,Acast.dimensions());
+     bool* ret = F.real<bool>().data();
+     const T* Ap = Acast.constReal<T>().constData();
+     const T& Bp = Bcast.constRealScalar<T>();
+@@ -347,7 +347,7 @@
+   } else {
+     if (Acast.dimensions() != Bcast.dimensions())
+       throw Exception("size mismatch in arguments to binary operator");
+-    F = Array::Array(Bool,Acast.dimensions());
++    F = Array(Bool,Acast.dimensions());
+     bool* ret = F.real<bool>().data();
+     const T* Ap = Acast.constReal<T>().constData();
+     const T* Bp = Bcast.constReal<T>().constData();
+@@ -395,18 +395,18 @@
+   if (!Bcast.isScalar()) Bcast = Bcast.asDenseArray();
+   if (Acast.isScalar() && Bcast.isScalar()) {
+     if (Acast.allReal() && Bcast.allReal()) {
+-      F = Array::Array(Op::func(Acast.constRealScalar<T>(),
++      F = Array(Op::func(Acast.constRealScalar<T>(),
+ 				Bcast.constRealScalar<T>()));
+     } else {
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(Op::func(Acast.constRealScalar<T>(),
++      F = Array(Op::func(Acast.constRealScalar<T>(),
+ 				Acast.constImagScalar<T>(),
+ 				Bcast.constRealScalar<T>(),
+ 				Bcast.constImagScalar<T>()));
+     }
+   } else if (Acast.isScalar()) {
+     if (Acast.allReal() && Bcast.allReal()) {
+-      F = Array::Array(Bool,Bcast.dimensions());
++      F = Array(Bool,Bcast.dimensions());
+       bool* ret = F.real<bool>().data();
+       const T& Ap = Acast.constRealScalar<T>();
+       const T* Bp = Bcast.constReal<T>().constData();
+@@ -414,7 +414,7 @@
+       for (uint64 i=0;i<q;i++) ret[i] = Op::func(Ap,Bp[i]);
+     } else {
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(Bool,Bcast.dimensions());
++      F = Array(Bool,Bcast.dimensions());
+       bool* ret = F.real<bool>().data();
+       const T& Ar = Acast.constRealScalar<T>();
+       const T& Ai = Acast.constImagScalar<T>();
+@@ -425,7 +425,7 @@
+     }
+   } else if (Bcast.isScalar()) {
+     if (Bcast.allReal() && Acast.allReal()) {
+-      F = Array::Array(Bool,Acast.dimensions());
++      F = Array(Bool,Acast.dimensions());
+       bool* ret = F.real<bool>().data();
+       const T* Ap = Acast.constReal<T>().constData();
+       const T& Bp = Bcast.constRealScalar<T>();
+@@ -433,7 +433,7 @@
+       for (uint64 i=0;i<q;i++) ret[i] = Op::func(Ap[i],Bp);
+     } else {
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(Bool,Acast.dimensions());
++      F = Array(Bool,Acast.dimensions());
+       bool* ret = F.real<bool>().data();
+       const T* Ar = Acast.constReal<T>().constData();
+       const T* Ai = Acast.constImag<T>().constData();
+@@ -446,7 +446,7 @@
+     if (Acast.dimensions() != Bcast.dimensions())
+       throw Exception("size mismatch in arguments to binary operator");
+     if (Bcast.allReal() && Acast.allReal()) {
+-      F = Array::Array(Bool,Acast.dimensions());
++      F = Array(Bool,Acast.dimensions());
+       bool* ret = F.real<bool>().data();
+       const T* Ap = Acast.constReal<T>().constData();
+       const T* Bp = Bcast.constReal<T>().constData();
+@@ -454,7 +454,7 @@
+       for (uint64 i=0;i<q;i++) ret[i] = Op::func(Ap[i],Bp[i]);
+     } else {
+       Acast.forceComplex(); Bcast.forceComplex();
+-      F = Array::Array(Bool,Acast.dimensions());
++      F = Array(Bool,Acast.dimensions());
+       bool* ret = F.real<bool>().data();
+       const T* Ar = Acast.constReal<T>().constData();
+       const T* Ai = Acast.constImag<T>().constData();
+@@ -533,9 +533,9 @@
+   if (!Acast.isScalar()) Acast = Acast.asDenseArray();
+   if (Acast.isScalar()) {
+     if (Acast.allReal()) {
+-      F = Array::Array(Op::func(Acast.constRealScalar<T>()));
++      F = Array(Op::func(Acast.constRealScalar<T>()));
+     } else {
+-      F = Array::Array(T(0),T(0));
++      F = Array(T(0),T(0));
+       Op::func(Acast.constRealScalar<T>(),
+ 	       Acast.constImagScalar<T>(),
+ 	       F.realScalar<T>(),F.imagScalar<T>());