module name conflict with print/gp, so remove it and I'll reimport it again

8 files changed, 0 insertions, 163 deletions

diff --git a/biology/Makefile b/biology/Makefile
index 52ca8f84d00..880d5e36e46 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -11,7 +11,6 @@
     SUBDIR += fasta3
     SUBDIR += fastdnaml
     SUBDIR += gaussian98
-    SUBDIR += gp
     SUBDIR += gperiodic
     SUBDIR += hmmer
     SUBDIR += kinemage
diff --git a/biology/gp/Makefile b/biology/gp/Makefile
deleted file mode 100644
index 088119d8fec..00000000000
--- a/biology/gp/Makefile
+++ /dev/null
@@ -1,36 +0,0 @@
-# ex:ts=8
-# New ports collection makefile for:	gp
-# Date created:			Feb 28, 2001
-# Whom:				Ying-Chieh Liao <ijliao@FreeBSD.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	gp
-PORTVERSION=	0.25
-CATEGORIES=	biology
-MASTER_SITES=	http://www.bioinformatics.org/genpak/download/
-EXTRACT_SUFX=	.tgz
-
-MAINTAINER=	ijliao@FreeBSD.org
-
-LIB_DEPENDS=	gd.1:${PORTSDIR}/graphics/gd \
-		png.4:${PORTSDIR}/graphics/png
-
-USE_GMAKE=	yes
-
-MAN1=	Genpak.1 gp_acc.1 gp_cusage.1 gp_digest.1 gp_dimer.1 gp_findorf.1 \
-	gp_gc.1 gp_getseq.1 gp_matrix.1 gp_mkmtx.1 gp_pattern.1 gp_qs.1 \
-	gp_randseq.1 gp_seq2prot.1 gp_slen.1 gp_tm.1 gp_trimer.1 gp_primer.1
-
-.if !defined(NOPORTDOCS)
-INSTALL_TARGET=	install docs
-.endif
-
-post-patch:
-	@${PERL} -pi -e "s|%%PREFIX%%|${PREFIX}|g ; \
-		s|%%MANPREFIX%%|${MANPREFIX}|g ; \
-		s|%%DOCDIR%%|${PREFIX}/share/doc|g ; \
-		s|%%CFLAGS%%|${CFLAGS}|g" ${WRKSRC}/Makefile
-
-.include <bsd.port.mk>
diff --git a/biology/gp/distinfo b/biology/gp/distinfo
deleted file mode 100644
index 1d640501a87..00000000000
--- a/biology/gp/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (gp-0.25.tgz) = 35bc282e2da3d5af24cf44ed01a04551
diff --git a/biology/gp/files/patch-Makefile b/biology/gp/files/patch-Makefile
deleted file mode 100644
index db0ffe3ad50..00000000000
--- a/biology/gp/files/patch-Makefile
+++ /dev/null
@@ -1,51 +0,0 @@
---- Makefile.orig	Tue Feb 13 22:41:12 2001
-+++ Makefile	Wed Feb 28 01:01:15 2001
-@@ -5,15 +5,13 @@
- ######################################################################
- # Change the following to suit your needs
- 
--SHELL=/bin/bash
--
- # The directory root of your installation
- # If you make a personal installation, change it to your home directory
- # Default: /usr
- # uncomment the following line to install to the default directories...
- # TREE=/usr
- # ...or the following line to install into your home directory:
--TREE=$(HOME)
-+TREE=%%PREFIX%%
- 
- # if you don't have the gd graphic library installed, you have to comment out or
- # delete the following line. However, gp_map is such a nice program, so you
-@@ -25,7 +23,7 @@
- BINDIR=$(TREE)/bin
- 
- # directory to install the manual pages
--MANDIR=$(TREE)/man
-+MANDIR=%%MANPREFIX%%/man
- 
- #directory to install the data directory
- DATADIR=$(TREE)/lib
-@@ -36,11 +34,11 @@
- # A catalog will be created: $(DOCDIR)/gp
- # It will *not* be uninstalled automagically after a "make uninstall"
- 
--DOCDIR=$(TREE)/doc
-+DOCDIR=%%DOCDIR%%
- 
- # Your favourite ANSI compiler and it's flags
- CC=gcc
--CFLAGS=-ansi -pedantic -O3 
-+CFLAGS=%%CFLAGS%%
- 
- ######################################################################
- # Do not change anything below this line
-@@ -58,7 +56,7 @@
- 	mporfs.seq
- 
- all: 
--	cd src ; make PROGRAMS="$(PROGRAMS)" GDPROGRAMS="$(GDPROGRAMS)" CC=$(CC) \
-+	cd src ; gmake PROGRAMS="$(PROGRAMS)" GDPROGRAMS="$(GDPROGRAMS)" CC=$(CC) \
- 		LIBS="$(LIBS)" CFLAGS="$(CFLAGS)" ; 
- 	@echo -e "\nAll programs compiled. \nType 'make install' to install all programs."
- 
diff --git a/biology/gp/files/patch-src::Makefile b/biology/gp/files/patch-src::Makefile
deleted file mode 100644
index 345fb413bb5..00000000000
--- a/biology/gp/files/patch-src::Makefile
+++ /dev/null
@@ -1,10 +0,0 @@
---- src/Makefile.orig	Wed Feb 28 01:01:24 2001
-+++ src/Makefile	Wed Feb 28 01:01:31 2001
-@@ -5,7 +5,6 @@
- ######################################################################
- # Change the following to suit your needs
- 
--SHELL=/bin/bash
- CC=gcc
- LIBS= -lz -lm
- #CFLAGS= -DNLS -DGZ
diff --git a/biology/gp/pkg-comment b/biology/gp/pkg-comment
deleted file mode 100644
index c8710a78359..00000000000
--- a/biology/gp/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-GP is a set of small utilities to manipulate DNA sequences
diff --git a/biology/gp/pkg-descr b/biology/gp/pkg-descr
deleted file mode 100644
index a8f362329a9..00000000000
--- a/biology/gp/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-GP is a set of small utilities written in ANSI C to manipulate DNA
-sequences in a Unix fashion, fit for combining within shell and cgi
-scripts.
-
-The sequences are usually in fasta format, that means the first line
-is the sequence name starting with ">", and the sequence comes in the
-next lines. The programs accept also gzipped sequence files.
-
-WWW: http://www.bioinformatics.org/genpak/#gp
diff --git a/biology/gp/pkg-plist b/biology/gp/pkg-plist
deleted file mode 100644
index 07c9bb039bf..00000000000
--- a/biology/gp/pkg-plist
+++ /dev/null
@@ -1,54 +0,0 @@
-bin/gp_acc
-bin/gp_cusage
-bin/gp_digest
-bin/gp_dimer
-bin/gp_findorf
-bin/gp_gc
-bin/gp_getseq
-bin/gp_matrix
-bin/gp_mkmtx
-bin/gp_pars
-bin/gp_pattern
-bin/gp_primer
-bin/gp_qs
-bin/gp_randseq
-bin/gp_scan
-bin/gp_seq2prot
-bin/gp_shift
-bin/gp_slen
-bin/gp_tm
-bin/gp_trimer
-lib/genpak/ecoli.mtx
-lib/genpak/enzyme.enz
-lib/genpak/mporfs.seq
-lib/genpak/myco.cdn
-lib/genpak/sample.seq
-lib/genpak/standard.cdn
-@dirrm lib/genpak
-%%PORTDOCS%%share/doc/gp/CHANGES.TXT
-%%PORTDOCS%%share/doc/gp/INSTALL.TXT
-%%PORTDOCS%%share/doc/gp/LICENSE.TXT
-%%PORTDOCS%%share/doc/gp/Makefile
-%%PORTDOCS%%share/doc/gp/README.TXT
-%%PORTDOCS%%share/doc/gp/html/README.html
-%%PORTDOCS%%share/doc/gp/html/gp_acc.html
-%%PORTDOCS%%share/doc/gp/html/gp_cusage.html
-%%PORTDOCS%%share/doc/gp/html/gp_digest.html
-%%PORTDOCS%%share/doc/gp/html/gp_dimer.html
-%%PORTDOCS%%share/doc/gp/html/gp_findorf.html
-%%PORTDOCS%%share/doc/gp/html/gp_gc.html
-%%PORTDOCS%%share/doc/gp/html/gp_getseq.html
-%%PORTDOCS%%share/doc/gp/html/gp_map.html
-%%PORTDOCS%%share/doc/gp/html/gp_matrix.html
-%%PORTDOCS%%share/doc/gp/html/gp_mkmtx.html
-%%PORTDOCS%%share/doc/gp/html/gp_pattern.html
-%%PORTDOCS%%share/doc/gp/html/gp_primer.html
-%%PORTDOCS%%share/doc/gp/html/gp_qs.html
-%%PORTDOCS%%share/doc/gp/html/gp_randseq.html
-%%PORTDOCS%%share/doc/gp/html/gp_seq2prot.html
-%%PORTDOCS%%share/doc/gp/html/gp_slen.html
-%%PORTDOCS%%share/doc/gp/html/gp_tm.html
-%%PORTDOCS%%share/doc/gp/html/gp_trimer.html
-%%PORTDOCS%%share/doc/gp/html/index.html
-%%PORTDOCS%%@dirrm share/doc/gp/html
-%%PORTDOCS%%@dirrm share/doc/gp