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authorsunpoet <sunpoet@FreeBSD.org>2016-04-21 04:42:39 +0800
committersunpoet <sunpoet@FreeBSD.org>2016-04-21 04:42:39 +0800
commitf231c2016f6af7580772f2ce74510dbe5a3a5788 (patch)
tree0d93d8b3173ba1999f1a826b0d19eaa1e23c4444 /science
parentde952e6047a864a03336bdf1ef9c05c4f62a64f0 (diff)
downloadfreebsd-ports-graphics-f231c2016f6af7580772f2ce74510dbe5a3a5788.tar.gz
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freebsd-ports-graphics-f231c2016f6af7580772f2ce74510dbe5a3a5788.zip
- Update to 1.10.0
- Add LICENSE_FILE - Remove outdated PORTSCOUT - Re-enable SZIP option by default: it was changed unintentionally in r398300 Changes: https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Diffstat (limited to 'science')
-rw-r--r--science/InsightToolkit/Makefile1
-rw-r--r--science/cdo/Makefile1
-rw-r--r--science/cgnslib/Makefile2
-rw-r--r--science/ecs/Makefile2
-rw-r--r--science/fvm/Makefile2
-rw-r--r--science/gnudatalanguage/Makefile2
-rw-r--r--science/h5utils/Makefile2
-rw-r--r--science/hdf5/Makefile22
-rw-r--r--science/hdf5/distinfo4
-rw-r--r--science/hdf5/pkg-plist45
-rw-r--r--science/meep/Makefile2
-rw-r--r--science/minc2/Makefile2
-rw-r--r--science/mpb/Makefile2
-rw-r--r--science/netcdf/Makefile2
-rw-r--r--science/paraview/Makefile2
-rw-r--r--science/py-h5py/Makefile1
-rw-r--r--science/py-netCDF4/Makefile1
-rw-r--r--science/silo/Makefile2
18 files changed, 46 insertions, 51 deletions
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index e5312c14d30..38d1f1b2e3b 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -3,6 +3,7 @@
PORTNAME= InsightToolkit
PORTVERSION= 4.9.0
+PORTREVISION= 1
CATEGORIES= science biology
MASTER_SITES= SF/itk/itk/4.9
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index a8f4cbab7a9..4bf4775b526 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -3,6 +3,7 @@
PORTNAME= cdo
PORTVERSION= 1.7.1
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= https://code.zmaw.de/attachments/download/12070/ \
LOCAL/sunpoet
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index ea7b26489b9..691a86e04d5 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,7 +3,7 @@
PORTNAME= cgnslib
DISTVERSION= 3.2.1
-PORTREVISION= 4
+PORTREVISION= 5
PORTEPOCH= 1
CATEGORIES= science
MASTER_SITES= SF/cgns/${PORTNAME}_${PORTVERSION:R}/
diff --git a/science/ecs/Makefile b/science/ecs/Makefile
index 553535f67ff..a3daddb2169 100644
--- a/science/ecs/Makefile
+++ b/science/ecs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ecs
PORTVERSION= 2.0.4
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://code-saturne.org/releases/
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index c8d52fa5df9..8a53a2a6033 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
PORTNAME= fvm
PORTVERSION= 0.15.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science parallel
MASTER_SITES= http://code-saturne.org/releases/
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index f79a88ab272..f546afab751 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gnudatalanguage
DISTVERSION= 0.9.6v2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science lang
MASTER_SITES= SF/${PORTNAME}/gdl/${PORTVERSION:R}
.if defined(BUILD_PYTHON_MODULE)
diff --git a/science/h5utils/Makefile b/science/h5utils/Makefile
index 0bc90da9019..9ed5b6a089c 100644
--- a/science/h5utils/Makefile
+++ b/science/h5utils/Makefile
@@ -3,7 +3,7 @@
PORTNAME= h5utils
PORTVERSION= 1.12.1
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/${PORTNAME}/
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
index d4ae97cb768..a8dbdb98197 100644
--- a/science/hdf5/Makefile
+++ b/science/hdf5/Makefile
@@ -2,27 +2,22 @@
# $FreeBSD$
PORTNAME= hdf5
-PORTVERSION= 1.8.15
-DISTVERSIONSUFFIX= -patch1
-PORTREVISION= 1
+PORTVERSION= 1.10.0
CATEGORIES= science archivers graphics
-MASTER_SITES= http://www.hdfgroup.org/ftp/HDF5/current/src/ \
- ftp://ftp.hdfgroup.org/HDF5/current/src/ \
- http://www.hdfgroup.org/ftp/HDF5/releases/${DISTNAME}/src/ \
- ftp://ftp.hdfgroup.org/HDF5/releases/${DISTNAME}/src/ \
+MASTER_SITES= https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
+ ftp://www.hdfgroup.org/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
LOCAL/sunpoet
MAINTAINER= sunpoet@FreeBSD.org
COMMENT= Hierarchical Data Format library (from NCSA)
LICENSE= BSD4CLAUSE
+LICENSE_FILE= ${WRKSRC}/COPYING
CONFLICTS_INSTALL= hdf-4.[0-9]* hdf5-1.6.[0-9]*
-PORTSCOUT= skipv:1.8.15-patch1
-
OPTIONS_DEFINE= DEBUG EXAMPLES FORTRAN SZIP
-#OPTIONS_DEFAULT=SZIP
+OPTIONS_DEFAULT=SZIP
OPTIONS_SUB= yes
CONFIGURE_ARGS= --enable-cxx \
@@ -41,11 +36,10 @@ PORTEXAMPLES= *
NOT_FOR_ARCHS= sparc64
NOT_FOR_ARCHS_REASON= does not compile
-DEBUG_CONFIGURE_OFF= --enable-production
-DEBUG_CONFIGURE_ON= --disable-production --enable-debug=all
+DEBUG_CONFIGURE_OFF= --enable-build-mode=production
+DEBUG_CONFIGURE_ON= --enable-build-mode=debug
+FORTRAN_CONFIGURE_ENABLE= fortran
FORTRAN_CONFIGURE_ENV= F9X=${FC}
-FORTRAN_CONFIGURE_OFF= --disable-fortran --disable-fortran2003
-FORTRAN_CONFIGURE_ON= --enable-fortran --enable-fortran2003
FORTRAN_USES= fortran
SZIP_CONFIGURE_ON= --with-szlib=${LOCALBASE}
SZIP_LIB_DEPENDS= libsz.so:science/szip
diff --git a/science/hdf5/distinfo b/science/hdf5/distinfo
index 5d54379cc3a..ff09f8e78c8 100644
--- a/science/hdf5/distinfo
+++ b/science/hdf5/distinfo
@@ -1,2 +1,2 @@
-SHA256 (hdf5-1.8.15-patch1.tar.bz2) = a5afc630c4443547fff15e9637b5b10404adbed4c00206d89517d32d6668fb32
-SIZE (hdf5-1.8.15-patch1.tar.bz2) = 10006036
+SHA256 (hdf5-1.10.0.tar.bz2) = 31ff70dc7c7317066ab3bda3eec4498a8b099c69c1271b008ed3df388e743d28
+SIZE (hdf5-1.10.0.tar.bz2) = 11239053
diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist
index 243b7b74cd1..64807b2e02c 100644
--- a/science/hdf5/pkg-plist
+++ b/science/hdf5/pkg-plist
@@ -2,11 +2,13 @@ bin/gif2h5
bin/h52gif
bin/h5c++
bin/h5cc
+bin/h5clear
bin/h5copy
bin/h5debug
bin/h5diff
bin/h5dump
%%FORTRAN%%bin/h5fc
+bin/h5format_convert
bin/h5import
bin/h5jam
bin/h5ls
@@ -17,6 +19,7 @@ bin/h5repack
bin/h5repart
bin/h5stat
bin/h5unjam
+bin/h5watch
include/H5ACpublic.h
include/H5AbstractDs.h
include/H5Apublic.h
@@ -63,12 +66,14 @@ include/H5IdComponent.h
include/H5Include.h
include/H5IntType.h
include/H5Ipublic.h
+include/H5LDpublic.h
include/H5LTpublic.h
include/H5Library.h
include/H5Location.h
include/H5Lpublic.h
include/H5MMpublic.h
include/H5Object.h
+include/H5OcreatProp.h
include/H5Opublic.h
include/H5PLextern.h
include/H5PLpublic.h
@@ -91,37 +96,29 @@ include/H5overflow.h
include/H5pubconf.h
include/H5public.h
include/H5version.h
-%%FORTRAN%%include/h5_dble_interface.mod
+%%FORTRAN%%include/h5_gen.mod
%%FORTRAN%%include/h5a.mod
-%%FORTRAN%%include/h5a_provisional.mod
%%FORTRAN%%include/h5d.mod
-%%FORTRAN%%include/h5d_provisional.mod
%%FORTRAN%%include/h5ds.mod
%%FORTRAN%%include/h5e.mod
-%%FORTRAN%%include/h5e_provisional.mod
%%FORTRAN%%include/h5f.mod
-%%FORTRAN%%include/h5f_provisional.mod
+%%FORTRAN%%include/h5fortkit.mod
%%FORTRAN%%include/h5fortran_types.mod
%%FORTRAN%%include/h5g.mod
%%FORTRAN%%include/h5global.mod
%%FORTRAN%%include/h5i.mod
%%FORTRAN%%include/h5im.mod
%%FORTRAN%%include/h5l.mod
-%%FORTRAN%%include/h5l_provisional.mod
%%FORTRAN%%include/h5lib.mod
-%%FORTRAN%%include/h5lib_provisional.mod
%%FORTRAN%%include/h5lt.mod
+%%FORTRAN%%include/h5lt_const.mod
%%FORTRAN%%include/h5o.mod
-%%FORTRAN%%include/h5o_provisional.mod
%%FORTRAN%%include/h5p.mod
-%%FORTRAN%%include/h5p_provisional.mod
%%FORTRAN%%include/h5r.mod
-%%FORTRAN%%include/h5r_provisional.mod
%%FORTRAN%%include/h5s.mod
%%FORTRAN%%include/h5t.mod
-%%FORTRAN%%include/h5t_provisional.mod
%%FORTRAN%%include/h5tb.mod
-%%FORTRAN%%include/h5test_kind_storage_size_mod.mod
+%%FORTRAN%%include/h5tb_const.mod
%%FORTRAN%%include/h5z.mod
include/hdf5.h
%%FORTRAN%%include/hdf5.mod
@@ -129,25 +126,25 @@ include/hdf5_hl.h
lib/libhdf5.a
lib/libhdf5.settings
lib/libhdf5.so
-lib/libhdf5.so.10
-lib/libhdf5.so.10.0.1
+lib/libhdf5.so.100
+lib/libhdf5.so.100.0.0
lib/libhdf5_cpp.a
lib/libhdf5_cpp.so
-lib/libhdf5_cpp.so.10
-lib/libhdf5_cpp.so.10.0.1
+lib/libhdf5_cpp.so.100
+lib/libhdf5_cpp.so.100.0.0
%%FORTRAN%%lib/libhdf5_fortran.a
%%FORTRAN%%lib/libhdf5_fortran.so
-%%FORTRAN%%lib/libhdf5_fortran.so.10
-%%FORTRAN%%lib/libhdf5_fortran.so.10.0.1
+%%FORTRAN%%lib/libhdf5_fortran.so.100
+%%FORTRAN%%lib/libhdf5_fortran.so.100.0.0
lib/libhdf5_hl.a
lib/libhdf5_hl.so
-lib/libhdf5_hl.so.10
-lib/libhdf5_hl.so.10.0.1
+lib/libhdf5_hl.so.100
+lib/libhdf5_hl.so.100.0.0
lib/libhdf5_hl_cpp.a
lib/libhdf5_hl_cpp.so
-lib/libhdf5_hl_cpp.so.10
-lib/libhdf5_hl_cpp.so.10.0.1
+lib/libhdf5_hl_cpp.so.100
+lib/libhdf5_hl_cpp.so.100.0.0
%%FORTRAN%%lib/libhdf5hl_fortran.a
%%FORTRAN%%lib/libhdf5hl_fortran.so
-%%FORTRAN%%lib/libhdf5hl_fortran.so.10
-%%FORTRAN%%lib/libhdf5hl_fortran.so.10.0.1
+%%FORTRAN%%lib/libhdf5hl_fortran.so.100
+%%FORTRAN%%lib/libhdf5hl_fortran.so.100.0.0
diff --git a/science/meep/Makefile b/science/meep/Makefile
index cf8d125db62..a2e56a49581 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -3,7 +3,7 @@
PORTNAME= meep
PORTVERSION= 1.2.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/meep/
diff --git a/science/minc2/Makefile b/science/minc2/Makefile
index 3bf793e0769..9fc783fa001 100644
--- a/science/minc2/Makefile
+++ b/science/minc2/Makefile
@@ -4,7 +4,7 @@
PORTNAME= minc
PORTVERSION= 2.2.00
DISTVERSIONPREFIX= release-
-PORTREVISION= 3
+PORTREVISION= 4
PORTEPOCH= 1
CATEGORIES= science biology
PKGNAMESUFFIX= 2
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index 7915b427030..fead0d35257 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mpb
PORTVERSION= 1.5
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/mpb/
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index befec72f840..3e8812ceb9f 100644
--- a/science/netcdf/Makefile
+++ b/science/netcdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= netcdf
PORTVERSION= 4.4.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
ftp://ftp.unidata.ucar.edu/pub/netcdf/ \
diff --git a/science/paraview/Makefile b/science/paraview/Makefile
index bdbdb984b25..521f1435aad 100644
--- a/science/paraview/Makefile
+++ b/science/paraview/Makefile
@@ -3,7 +3,7 @@
PORTNAME= paraview
PORTVERSION= 4.3.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science graphics
MASTER_SITES= http://www.paraview.org/files/v${VERMAJORMINOR}/
DISTNAME= ParaView-v${PORTVERSION}-source
diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile
index f4d8c225545..b1d70ff4473 100644
--- a/science/py-h5py/Makefile
+++ b/science/py-h5py/Makefile
@@ -3,6 +3,7 @@
PORTNAME= h5py
PORTVERSION= 2.5.0
+PORTREVISION= 1
CATEGORIES= science python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index 6c3d77b9fc7..646b2f70758 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -5,6 +5,7 @@ PORTNAME= netCDF4
PORTVERSION= 1.2.4
DISTVERSIONPREFIX= v
DISTVERSIONSUFFIX= rel
+PORTREVISION= 1
CATEGORIES= science python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/silo/Makefile b/science/silo/Makefile
index edf77d682e8..7d82de61c33 100644
--- a/science/silo/Makefile
+++ b/science/silo/Makefile
@@ -4,7 +4,7 @@
PORTNAME= silo
PORTVERSION= 4.10
DISTVERSIONSUFFIX= -bsd
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= https://wci.llnl.gov/codes/${PORTNAME}/silo-${PORTVERSION}/