diff options
| -rw-r--r-- | biology/phylip/Makefile | 41 | ||||
| -rw-r--r-- | biology/phylip/distinfo | 6 | ||||
| -rw-r--r-- | biology/phylip/pkg-plist | 43 |
3 files changed, 17 insertions, 73 deletions
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile index d49910a8b37..e9bead002b1 100644 --- a/biology/phylip/Makefile +++ b/biology/phylip/Makefile @@ -6,8 +6,7 @@ # PORTNAME= phylip -PORTVERSION= 3.6 -PORTEPOCH= 1 +PORTVERSION= 3.65 CATEGORIES= biology MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/phylip/ \ http://bioinformatics.weizmann.ac.il/software/linkage_and_mapping/phylip/ \ @@ -17,6 +16,7 @@ MASTER_SITE_SUBDIR= distfiles MAINTAINER= dbader@ece.unm.edu COMMENT= A Phylogeny Inference Package +WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION} USE_XLIB= yes BUILD_WRKSRC= ${WRKSRC}/src @@ -24,36 +24,23 @@ MAKE_ARGS= CC="${CC} ${CFLAGS}" \ DC="${CC} -DX -I${X11BASE}/include ${CFLAGS}" \ GLIBS="-L${X11BASE}/lib -lX11 -lm" -BINARIES= clique consense contml contrast dnacomp dnadist dnainvar \ - dnaml dnamlk dnamove dnapars dnapenny dollop dolmove \ - dolpenny drawgram drawtree factor fitch gendist kitsch \ - mix move neighbor pars penny proml promlk protdist \ - protpars restdist restml retree seqboot treedist -DOCFILES= clique.html consense.html contchar.html contml.html \ - contrast.html discrete.html distance.html dnacomp.html \ - dnadist.html dnainvar.html dnaml.html dnamlk.html \ - dnamove.html dnapars.html dnapenny.html dollop.html \ - dolmove.html dolpenny.html draw.html drawgram.html \ - drawtree.html factor.html fitch.html gendist.html \ - kitsch.html main.html mix.html move.html neighbor.html \ - pars.html penny.html phylip.gif proml.html promlk.html \ - protdist.html protpars.html restdist.html restml.html \ - retree.html seqboot.html sequence.html treedist.html -FONTFILES= font1 font2 font3 font4 font5 font6 +PORTDOCS= * do-install: -.for f in ${BINARIES} - ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/${f} ${PREFIX}/bin -.endfor + @cd ${BUILD_WRKSRC} && ${MAKE} install + + @cd ${WRKSRC}/exe && \ + ${FIND} . -not -type d -not -name 'font*' -exec ${INSTALL_PROGRAM} "{}" "${PREFIX}/bin/{}" \; + ${MKDIR} ${DATADIR} -.for font in ${FONTFILES} - ${INSTALL_DATA} ${BUILD_WRKSRC}/${font} ${DATADIR} -.endfor + @cd ${WRKSRC}/exe && \ + ${FIND} . -not -type d -name 'font*' -exec ${INSTALL_DATA} "{}" "${DATADIR}/{}" \; + +post-install: .if !defined(NOPORTDOCS) ${MKDIR} ${DOCSDIR} -.for f in ${DOCFILES} - ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/${f} ${DOCSDIR} -.endfor + @cd ${WRKSRC}/doc && \ + ${FIND} . -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \; .endif .include <bsd.port.mk> diff --git a/biology/phylip/distinfo b/biology/phylip/distinfo index 9ad7147099e..4c9fc0ab8b7 100644 --- a/biology/phylip/distinfo +++ b/biology/phylip/distinfo @@ -1,3 +1,3 @@ -MD5 (phylip-3.6.tar.gz) = ff0ded7756db29d948f355ed5cc020cc -SHA256 (phylip-3.6.tar.gz) = 2e5ccf074ae33d17302afc75dd0533a189502bb2b83ed361ccc345cad09a142b -SIZE (phylip-3.6.tar.gz) = 855538 +MD5 (phylip-3.65.tar.gz) = c89a92c8692faaba4310b69b2d89bc33 +SHA256 (phylip-3.65.tar.gz) = 8f8ab66a58dbe1fdf0b615c13b6d358d6c49195fbaeaabc6190253e895c0d528 +SIZE (phylip-3.65.tar.gz) = 1036976 diff --git a/biology/phylip/pkg-plist b/biology/phylip/pkg-plist index a5523cad3ad..86a349a1e9d 100644 --- a/biology/phylip/pkg-plist +++ b/biology/phylip/pkg-plist @@ -33,48 +33,6 @@ bin/restml bin/retree bin/seqboot bin/treedist -%%PORTDOCS%%%%DOCSDIR%%/clique.html -%%PORTDOCS%%%%DOCSDIR%%/consense.html -%%PORTDOCS%%%%DOCSDIR%%/contchar.html -%%PORTDOCS%%%%DOCSDIR%%/contml.html -%%PORTDOCS%%%%DOCSDIR%%/contrast.html -%%PORTDOCS%%%%DOCSDIR%%/discrete.html -%%PORTDOCS%%%%DOCSDIR%%/distance.html -%%PORTDOCS%%%%DOCSDIR%%/dnacomp.html -%%PORTDOCS%%%%DOCSDIR%%/dnadist.html -%%PORTDOCS%%%%DOCSDIR%%/dnainvar.html -%%PORTDOCS%%%%DOCSDIR%%/dnaml.html -%%PORTDOCS%%%%DOCSDIR%%/dnamlk.html -%%PORTDOCS%%%%DOCSDIR%%/dnamove.html -%%PORTDOCS%%%%DOCSDIR%%/dnapars.html -%%PORTDOCS%%%%DOCSDIR%%/dnapenny.html -%%PORTDOCS%%%%DOCSDIR%%/dollop.html -%%PORTDOCS%%%%DOCSDIR%%/dolmove.html -%%PORTDOCS%%%%DOCSDIR%%/dolpenny.html -%%PORTDOCS%%%%DOCSDIR%%/draw.html -%%PORTDOCS%%%%DOCSDIR%%/drawgram.html -%%PORTDOCS%%%%DOCSDIR%%/drawtree.html -%%PORTDOCS%%%%DOCSDIR%%/factor.html -%%PORTDOCS%%%%DOCSDIR%%/fitch.html -%%PORTDOCS%%%%DOCSDIR%%/gendist.html -%%PORTDOCS%%%%DOCSDIR%%/kitsch.html -%%PORTDOCS%%%%DOCSDIR%%/main.html -%%PORTDOCS%%%%DOCSDIR%%/mix.html -%%PORTDOCS%%%%DOCSDIR%%/move.html -%%PORTDOCS%%%%DOCSDIR%%/neighbor.html -%%PORTDOCS%%%%DOCSDIR%%/pars.html -%%PORTDOCS%%%%DOCSDIR%%/penny.html -%%PORTDOCS%%%%DOCSDIR%%/phylip.gif -%%PORTDOCS%%%%DOCSDIR%%/proml.html -%%PORTDOCS%%%%DOCSDIR%%/promlk.html -%%PORTDOCS%%%%DOCSDIR%%/protdist.html -%%PORTDOCS%%%%DOCSDIR%%/protpars.html -%%PORTDOCS%%%%DOCSDIR%%/restdist.html -%%PORTDOCS%%%%DOCSDIR%%/restml.html -%%PORTDOCS%%%%DOCSDIR%%/retree.html -%%PORTDOCS%%%%DOCSDIR%%/seqboot.html -%%PORTDOCS%%%%DOCSDIR%%/sequence.html -%%PORTDOCS%%%%DOCSDIR%%/treedist.html %%DATADIR%%/font1 %%DATADIR%%/font2 %%DATADIR%%/font3 @@ -82,4 +40,3 @@ bin/treedist %%DATADIR%%/font5 %%DATADIR%%/font6 @dirrm %%DATADIR%% -%%PORTDOCS%%@dirrm %%DOCSDIR%% |