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* Upgrade to 2.7.7 / fix distfile-Fenneragebillf1999-11-232-3/+3
* echo -> ${ECHO} or ${ECHO_MSG} and in some cases, move echo stuffmharo1999-08-281-9/+9
* Change Id->FreeBSD.obrien1999-08-251-1/+1
* Upgrade to latest version.markm1999-07-102-5/+5
* As threatened, enforce the "Capital, no period" rule. Ellipses arehoek1999-06-271-1/+1
* Move WWW_SITE to pkg/DESCR:WWW from Makefilescrappy1999-04-142-3/+2
* Proper URLs that reference directories end in '/'billf1999-04-091-2/+2
* oops, restore MANUAL_PACKAGE_BUILDache1999-03-291-1/+2
* install examples tooache1999-03-292-0/+22
* change db-specific prefix to shorter one - db2ache1999-03-292-457/+466
* upgrade to 2.7.3, old distfile is not available in anycaseache1999-03-294-75/+478
* Commit all Y2K/WWW_SITE changes to Makefiles...scrappy1999-03-121-1/+2
* More Y2K Statement Links...scrappy1999-01-131-1/+3
* Long live feminism! No manpages! Nyah-hah-hah!hoek1998-08-171-31/+0
* Upgrade to v2.3.16jfitz1998-01-272-6/+15
* Oops, what was I thinking. Put MANUAL_PACKAGE_BUILD to the right place.asami1997-11-221-3/+2
* Define MANUAL_PACKAGE_BUILD -- it is incompatible with the one in the system.asami1997-11-221-1/+3
* Upgradet to v2.3.12jfitz1997-11-123-10/+16
* Update to description filejfitz1997-11-011-3/+5
* Upgrade to v2.3.11jfitz1997-10-034-12/+70
* Upgrade to v2.2.6jfitz1997-09-063-5/+9
* Fix pkg/COMMENT to not use the specific version numberjfitz1997-07-161-1/+1
* Import of Berkely DB 2.0jfitz1997-06-145-0/+76
generated by cgit (git 2.34.1) at 2024-12-19 14:16:37 +0800
-18 22:04:03 +0800'>2002-01-183-15/+335 * Update to 0.2.petef2001-12-294-19/+8 * Initial import of artemis 4.0kevlo2001-12-226-0/+1529 * Update to 0.3.3.knu2001-12-223-2/+3 * Add gff2ps 0.97b, converts gff-formated genomic data-sets topetef2001-12-196-0/+42 * Add dna-qc 1993.07.26, a quality control algorithm for DNApetef2001-12-197-0/+94 * Update to version 2001.10.12.steve2001-12-172-2/+2 * fix pkg-plistijliao2001-12-091-0/+1 * * Replace pkg-message about setting BABEL_DIR with a wrapper scriptnaddy2001-12-028-26/+55 * - update to 1.3.2petef2001-11-292-7/+4 * Update to 0.3.2.knu2001-11-283-4/+21 * Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-211-1/+1 * Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-212-2/+2 * chase checksum for repacked distfile almost an year ago.sf2001-11-063-2/+3 * Add ruby-bio (BioRuby), an integrated environment for Bioinformaticsknu2001-10-246-0/+91 * update WWW and master siteijliao2001-10-222-2/+10 * Remove a redundant trailing space.knu2001-10-211-1/+1 * - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0wjv2001-10-025-263/+210 * Add nclever 4.0, a character-based version of NCBI's Entrez program.wjv2001-09-268-0/+105 * - Add NO_LATEST_LINK, which should've been there in the first place. :-(wjv2001-09-201-0/+1 * - Add installation of include fileswjv2001-09-194-134/+445 * style fix: un"echo" commandslioux2001-09-131-40/+40 * Update to 3.9lioux2001-09-1312-116/+161 * Bump png majorache2001-09-111-1/+1 * Fix a buglet with the use of XFREE86_VERSION without includingtobez2001-09-071-1/+3 * Make biology/rasmol work at all color depths.tobez2001-09-074-8/+91 * - Update to version 1.00.a3wjv2001-09-064-105/+167 * - Update to version 3.1wjv2001-08-294-6/+18 * - Update to version 1.0.3wjv2001-08-292-3/+3 * - Update to version 1.2.4wjv2001-08-222-2/+2 * - Update port to version 2.2gwjv2001-08-224-223/+34 * Add seqio 1.2.2, a set of C functions which can read/writewjv2001-08-2210-0/+400 * - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenwjv2001-08-225-43/+30 * - Move the (very) long list of manpages from the port Makefile to a separatewjv2001-08-202-123/+240 * Update to 0.95.trevor2001-08-204-27/+30 * Remove a patch turd from the pkg-plistkris2001-08-201-1/+0 * Add treeviewx 0.1.1, a phylogenetic tree viewer.wjv2001-08-179-0/+82 * Add p5-bioperl-devel 0.9.0,wjv2001-08-148-0/+566 * Update to version 1.75wjv2001-08-134-14/+27 * - Properly list run-time dependencies in RUN_DEPENDS in Makefile.wjv2001-08-133-40/+46 * upgrade to 0.26ijliao2001-08-105-32/+30 * Add lamarc 2001.08.06,wjv2001-08-075-0/+42 * Add recombine 1.40, a program to fit population models across sites.wjv2001-08-067-0/+166 * Add fluctuate 1.30, a program to fit population models.wjv2001-08-067-0/+89 * Add coalesce 1.50, a program to fit population models.wjv2001-08-067-0/+73 * Correct my email address.wjv2001-08-061-1/+1 * Add migrate 1.2,wjv2001-08-066-0/+63 * Update maintainer's email address.wjv2001-08-061-1/+1 * - Update port to version 2.0.1wjv2001-08-035-24/+110 * add USE_XLIBlioux2001-07-311-0/+2 * This port require bison to build so add USE_BISON.steve2001-07-261-0/+1 * Remove obsolete pointer to online documentation.wjv2001-07-111-4/+2 * Update package's URL; my email address.wjv2001-07-112-3/+3 * Update Tony Maher's email address.fenner2001-07-111-1/+1 * ${PREFIX}/share/${PORTNAME} --> ${DATADIR}sobomax2001-07-101-2/+2 * Update to version 1.00.a2wjv2001-07-096-8/+46 * Add NOPORTDOCS support to pkg-plistijliao2001-07-0911-1381/+1380 * Update to version 1.3.0wjv2001-07-062-3/+3 * - General clean-up of port.wjv2001-07-055-38/+252 * - Update to version 0.7.1wjv2001-07-044-3/+24 * - Add %%PORTDOCS%% support to pkg-plist.wjv2001-07-042-3/+3 * Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogenywjv2001-07-047-0/+64 * Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportwjv2001-07-042-107/+107 * Add %%PORTDOCS%% suppor to pkg-plist.wjv2001-07-032-12/+12 * Add support for %%PORTDOCS%%.wjv2001-07-031-42/+42 * Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.wjv2001-07-032-2/+2 * Update to version 3.04wjv2001-07-033-5/+5 * Update to version 1.82wjv2001-07-032-3/+2 * Use $FILESDIR rather than hard-coded path.wjv2001-06-291-1/+1 * Updating my email address in my remaining ports.wjv2001-06-273-3/+3 * Embarrassingly long overdue update to 0.7.0, including optional support forwjv2001-06-263-66/+300 * Update to version 2001.04.03; add installation of some documentation.wjv2001-06-205-30/+86 * Update to 1.00.a1; change MAINTAINER to my new address.wjv2001-06-156-124/+691 * Update to 1.13.3; remove bogus file.wjv2001-06-154-71/+9 * - Update to version 1.2.6akevlo2001-06-124-8/+9 * Distfile was moved and renamed.markp2001-06-112-3/+3 * Use proper POSIX syntax for `chown'.obrien2001-06-011-1/+1 * Update to version 1.13.1kevlo2001-05-305-42/+240 * math/numpy was renamed to math/py-numeric.sobomax2001-05-291-1/+1 * upgrade to 4.3.2ijliao2001-05-2714-458/+389 * Update the EMBOSS suite (biology/emboss) to version 1.12.0jeh2001-05-073-138/+25 * Updata biology/fasta3 to version 33.t08.d4jeh2001-05-073-8/+8 * Update distfile checksum (PORTREVISION bumped)olgeni2001-04-205-37/+14 * activate IGNOREFILES.sf2001-04-141-0/+3 * Ignore checksum. The distfile changes day by day.sf2001-04-131-1/+1 * This port require X libraries to build/run.steve2001-04-111-0/+1 * Overhaul QT/KDE support:will2001-04-031-2/+1 * update to 3.03mharo2001-04-024-27/+5 * updated port biology/phylip from vers 3.5 to 3.6mharo2001-04-025-94/+110 * - Update MASTER_SITES and WWW: linekevlo2001-03-314-32/+21 * Update to 33.t08.d3.sobomax2001-03-223-4/+3 * - Upgrade to version 1.70kevlo2001-03-135-18/+41 * Upgrade to 0.4.kuriyama2001-03-134-12/+12 * o update to 2.7.2.sf2001-03-132-5/+5 * pass maintainership to ports@.sf2001-03-131-1/+1 * Update to lastest versionkevlo2001-03-122-2/+3 * Update the EMBOSS suite to v1.11.0nbm2001-03-123-7/+12 * - A small bugfix lead to a rerelease without a version number change.nbm2001-03-122-1/+2 * Update to 0.85.trevor2001-03-122-2/+2 * Force -O0 on the Alpha.trevor2001-03-121-1/+7 * fix WWW:sf2001-03-091-1/+1 * update to 33.t08.d2.sf2001-03-082-2/+2 * gd.2, not gd.1ijliao2001-03-051-1/+1 * Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.roam2001-03-052-3/+3 * Remove do-configure section, use PERL_CONFIGURE now.vanilla2001-03-011-1/+0 * Update to version 1.10.1kevlo2001-02-283-8/+7 * reimport biology/genpakijliao2001-02-288-0/+164 * module name conflict with print/gp, so remove it and I'll reimport it againijliao2001-02-288-163/+0 * add gpijliao2001-02-288-0/+163 * Update to version 1.10.0kevlo2001-02-205-24/+51 * The author (at my request) has gone back to a more FreeBSD-friendlytrevor2001-02-202-2/+1 * Update to 0.84.trevor2001-02-193-15/+14 * Update to version 2001-02-06jeh2001-02-192-2/+2 * Chase graphics/gd's shlib version bump.knu2001-02-121-1/+2 * - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andjeh2001-02-129-0/+204 * New port: biology/fasta, the FASTA2 suite of DNA and protein sequencejeh2001-02-128-0/+151 * add gaussian98, an ab-initio molecular orbital calculation program.sf2001-02-1112-0/+822 * Update to 0.84a. Generate the plist.trevor2001-02-093-8/+10 * - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1kevlo2001-01-2910-77/+118 * update from 3.7 to 3.8ijliao2001-01-2518-167/+706 * Upgrade to version 1.9.0kevlo2001-01-246-13/+47 * Massive style enforcement - use ^I instead of spaces for variables identation.sobomax2001-01-171-2/+2 * Clean up inefficient perl invocations; use multiple REs in the same call.will2001-01-081-2/+2 * Update to 1.2.6kevlo2000-12-234-7/+25 * Remove trailing period and package name from the pkg-comment.demon2000-12-191-1/+1 * Update to version 5.79.steve2000-12-113-26/+42 * Update distfiles' checksums after the distfiles have been rerolled yetroam2000-12-042-4/+5 * Distfile tarballs were rerolled without notice due to a minor bug.roam2000-12-011-4/+4 * - Update port biology/emboss from 1.7.0 to 1.8.0jeh2000-11-284-17/+124 * Make nolonger support :U. Fix to compensate for that.jeh2000-11-191-3/+6 * They made changes to the "blast" program.jeh2000-11-152-2/+3 * - This is a fairly extensive rework of this port.jeh2000-11-133-0/+56 * - This is a fairly extensive rework of this port.jeh2000-11-134-5/+150 * Change motif to a normal dependency. REQUIRES_MOTIF is now calledasami2000-11-081-1/+1 * Yes. They did re-roll this version, it is legit.jeh2000-11-032-2/+2 * Updated to new version. That is the pits, the day after it becomesjeh2000-11-024-4/+3 * Make portlint happy, remove a spacejeh2000-11-011-1/+1 * Update to version 1.7.0jeh2000-11-013-2/+11 * File missing in pkg-plistjeh2000-10-301-0/+1 * New Port: biology/ncbi-toolkitjeh2000-10-2911-0/+376 * Update biology/sim4 to 2000.10.19jeh2000-10-263-5/+7 * gmake is neededjeh2000-10-241-0/+1 * Update to version 0.6.2jeh2000-10-133-174/+132 * A file was added to distfile and then repackaged with the same name.jeh2000-10-133-2/+5 * Initial import of fastDNAml Version 1.2.2jeh2000-10-126-0/+93 * Missing " in post-patch targetjeh2000-10-111-1/+1 * PR 21608 was not processed as intented.jeh2000-10-112-21/+22 * Initial import of biology/biojavajeh2000-10-106-0/+661 * - Update to 1.6.0kevlo2000-10-103-363/+372 * - Update biology/p5-AcePerl from 1.62 to 1.67kevlo2000-10-106-61/+88 * Initiail version of nab (4.2)jeh2000-10-1017-0/+666 * This is nab (nucleic acid builder), a language for macromoleculesjeh2000-10-101-0/+1 * - Fix MASTER_SITES/DISTNAMEjeh2000-10-103-20/+19 * The last commit changes the ports and therefore need a PORTREVISION bumpjeh2000-10-102-0/+2 * Support PREFIX properlyjeh2000-10-102-1/+5 * - Fix MASTER_SITESjeh2000-10-104-18/+36 * Add do-install target to port's Makefile. Remove patch sectiontrevor2000-10-092-10/+5 * Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} isasami2000-10-081-1/+1 * Rename ${FILESDIR}/patch-* to ${PATCHDIR}/extra-patch-*.asami2000-10-081-2/+2 * Implement USE_GTK, part 1.reg2000-10-053-38/+26 * - Support CC/CFLAGS/PREFIX properlyjeh2000-10-036-8/+127 * Correct and sort PLISTs.reg2000-10-032-6/+6 * Change MAINTAINER for my ports.trevor2000-10-021-1/+1 * Add USE_XLIBkris2000-09-221-0/+1 * respect CXX and CXXFLAGS (Kato Tsuguru)ade2000-09-194-20/+39 * Update to 0.90.d03nbm2000-09-113-132/+152 * Fix checksumkevlo2000-09-091-18/+1 * Don't break package building on Satoshi's cluster. Explicitly dependtg2000-09-081-1/+1 * Upgrade to 1.5.0nbm2000-09-084-66/+113 * Update to emboss 1.4.0.nbm2000-09-074-52/+83 * Update to version 2000.08.24kevlo2000-09-044-7/+23 * USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.sobomax2000-08-211-1/+0 * Update to emboss 1.1.0, fixing some style bugs too.nbm2000-08-135-6/+321 * Upgrade to 0.90.d02.will2000-08-062-3/+3 * Fix MASTER_SITESjedgar2000-08-021-1/+1 * Add emboss, the European Molecular Biology Open Software Suitenbm2000-08-016-0/+700 * Add py-biopython, is a collection of Python packages and modules creatednbm2000-07-316-0/+166 * Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsnbm2000-07-287-0/+259 * Add p5-AcePerl, a perl interface to the ACEDB genome database systemnbm2000-07-289-0/+177 * Add sim4, an implementation of the sim4 algorithm for aligning expressednbm2000-07-277-0/+48 * Add xdrawchem 0.82 - a program for drawing moleculesalex2000-07-197-0/+65 * Activating the chemeq, clustalw, paml, and phylip ports.steve2000-07-101-0/+4 * Adding phylip version 3.5.steve2000-07-105-0/+161 * Add paml version 3.01.steve2000-07-107-0/+89 * Adding clustalw version 1.81.steve2000-07-106-0/+66 * Adding chemeq version 1.10.steve2000-07-105-0/+62 * - Use GTK_CONFIG/GLIB_CONFIG instead of hardcoded gtk12-config/glib12-configsteve2000-07-082-19/+27 * Unbreak by extracting the correct distfilekris2000-07-031-8/+2 * ...local-distfiles... -> MASTER_SITE_LOCALalex2000-06-201-1/+2 * fc is ftn77 now, adjust accordingly.alex2000-06-123-5/+6 * Update to version 1.0.3alex2000-06-114-24/+23 * Clean up this port so that it installs stuff in a more proper locationwill2000-06-093-138/+138 * Update to the latest version as of 5 June.knu2000-06-084-15/+26 * Fix build for 4.0 and later. Make DESCR shorter.will2000-06-085-165/+181 * Update to 3.6.will2000-06-086-114/+145 * Convert to usable F77 binary, especially on 4.0 and newer.will2000-06-084-82/+73 * Fix MD5 checksum. Since I was unable to find an older version of thewill2000-06-051-1/+1 * Fix this port after the recent PORT{NAME,VERSION} changes. portlint(1)steve2000-05-281-2/+4 * Update to version 2000.04.26.steve2000-05-283-5/+3 * Chase the checksum (lots of code changes)kris2000-04-241-1/+1 * WRKSRC-related fixes.asami2000-04-161-0/+1 * update with the new PORTNAME/PORTVERSION variablesmharo2000-04-0915-53/+51 * Remove andy@icc.surw.chel.su as maintainer from his ports..he doesn'tkris2000-03-291-1/+1 * Add virtual category "linux" to Linux apps and support libs/utils.asami2000-02-281-1/+1 * Chase the checksum (minor source changes)kris2000-02-271-1/+1 * update URLsmharo2000-02-241-2/+2 * update WWWmharo2000-02-241-1/+1 * Forgot to remove this linecpiazza2000-02-071-1/+0 * Don't strip things we don't know how to stripcpiazza2000-01-311-1/+1 * fix some pkg/MESSAGE stuffmharo2000-01-302-2/+2 * Update to ver 1.2.2cpiazza2000-01-152-3/+3 * Bump glib12 's share library version to 3,vanilla1999-10-102-10/+2 * f77(1) on the Alpha doesn't grok '-malign-double' so only use it on thesteve1999-09-271-0/+4 * Enforce random pkg/COMMENT rules, including the one that states Emacshoek1999-09-182-2/+2 * Grammar and WWW: fix.hoek1999-09-181-7/+6 * Update to new version.steve1999-09-183-8/+5 * Compile-errortaoka1999-09-102-3/+9 * Compile errortaoka1999-09-091-1/+1 * Added gperiodic and xmolwttaoka1999-09-071-0/+2 * Displays a periodic table of the elements.taoka1999-09-075-0/+58 * This program calculate formula weight and percent of each elements.taoka1999-09-076-0/+82 * Distfile changed on the MASTER_SITE. I have no idea if thiscpiazza1999-08-312-6/+6 * Remove preceeding pkgname from some of the comments having one.hoek1999-08-301-1/+1 * grammar gnithoek1999-08-301-1/+1 * ln -> ${LN}mharo1999-08-282-2/+2 * echo -> ${ECHO} or ${ECHO_MSG} and in some cases, move echo stuffmharo1999-08-28