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%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%%%DOCSDIR%%/example
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_gen.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_input
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_score_output
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_output
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_score_output
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_test.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_input
%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_output
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no=.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no=.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_long_lib_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_long_lib_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary1_lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary2_lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_long_lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_test.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib1
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib2
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib3
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib4
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib5
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib6
%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_tm_test.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_lib_amb_codes_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_lib_amb_codes_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_template_mispriming_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_template_mispriming_output
bin/primer3
%%DATADIR%%/Copyright
@dirrm %%DATADIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer1_list_last
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer_global_err
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer_list_last
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%