Update to 1.00.a1; change MAINTAINER to my new address.

Many changes to port, including addition of CORBA functionality.

PR:		27957
Submitted by:	Johann Visagie <johann@egenetics.com>
Reviewed by:	nbm

6 files changed, 691 insertions, 124 deletions

diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile
index faddb1e0ed5e..0f9389e1d37f 100644
--- a/biology/py-biopython/Makefile
+++ b/biology/py-biopython/Makefile
@@ -6,23 +6,121 @@
 #
 
 PORTNAME=	biopython
-PORTVERSION=	0.90.d03
+PORTVERSION=	1.00.a1
 CATEGORIES=	biology python
 MASTER_SITES=	http://www.biopython.org/Download/
-PKGNAMEPREFIX=	py-
-DISTNAME=	biopython-0.90-d03
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+DISTNAME=	${PORTNAME}-${PORTVERSION:S/.a/a/}
+DISTFILES=	${DISTNAME}${EXTRACT_SUFX}
 
-MAINTAINER=	johann@egenetics.com
+MAINTAINER=	wjv@FreeBSD.org
 
-USE_PYTHON=	yes
-
-BUILD_DEPENDS=	${PYDISTUTILS} \
+BUILD_DEPENDS=	${PYDISTUTILS}
+RUN_DEPENDS=	${PYTHON_SITELIBDIR}/Martel/__init__.py:${PORTSDIR}/textproc/py-martel \
 		${PYTHON_SITELIBDIR}/Numeric/Numeric.py:${PORTSDIR}/math/py-numeric
 
+# Biopython requires Python 2.0 or above:
+PYTHON_VERSION=	python2.1
+
+PLIST_SUB+=	PLIST_CORBA=${PLIST_CORBA} PLIST_OMNIORB=${PLIST_OMNIORB} \
+		PLIST_FNORB=${PLIST_FNORB}
+CPIO=		cpio --quiet -pdum -R
+DOCDIR=		${PREFIX}/share/doc/py-biopython
+EGDIR=		${PREFIX}/share/examples/py-biopython
+
+# CORBA support (a.k.a Biopython-CORBA):
+# Set WITH_CORBA to enable CORBA support for the Biopython port.
+.if defined(WITH_CORBA)
+
+# CORBA_ORB may be set from the command line to either "omniorb", "fnorb"
+# or "orbit".
+# - omniORB is a commercial quality, high speed ORB.  The installation is
+#   huge and building the C++ source is a lengthy process.  The omniORBpy
+#   Python bindings are used.
+# - Fnorb is a tiny, lightweight ORB and is excellent for testing purposes.
+# - ORBit is a very popular and elegant ORB.  The ORBit-Python bindings are
+#   used.
+# Since Fnorb is distributed under a non-free licence and ORBit support in
+# Biopython-CORBA is not yet stable, "omniorb" is the default.
+CORBA_ORB?=	omniorb
+
+CORBA_VERSION=	0.2.1
+CORBA_DISTNAME=	biopython-corba-${CORBA_VERSION}
+CORBA_WRKSRC=	${WRKDIR}/${CORBA_DISTNAME}
+DISTFILES+=	${CORBA_DISTNAME}${EXTRACT_SUFX}
+PLIST_CORBA=	""
+
+.if ${CORBA_ORB} == "omniorb"
+RUN_DEPENDS+=	${PYTHON_SITELIBDIR}/omniORB/__init__.py:${PORTSDIR}/devel/py-omniorb
+CORBA_ORBNAME=	omniORB
+PLIST_OMNIORB=	""
+PLIST_FNORB=	"@comment "
+.elif ${CORBA_ORB} == "fnorb"
+BUILD_DEPENDS+=	${PYTHON_SITELIBDIR}/Fnorb/__init__.py:${PORTSDIR}/devel/fnorb
+CORBA_ORBNAME=	Fnorb
+EXTRA_PATCHES+=	${PATCHDIR}/extra-patch-build_helper.py
+PLIST_OMNIORB=	"@comment "
+PLIST_FNORB=	""
+.elif ${CORBA_ORB} == "orbit"
+RUN_DEPENDS+=	${PREFIX}/include/orbit-python/orbit-python.h:${PORTSDIR}/devel/py-orbit
+CORBA_ORBNAME=	ORBit
+PLIST_OMNIORB=	"@comment "
+PLIST_FNORB=	"@comment "
+.endif
+
+.else
+PLIST_CORBA=	"@comment "
+PLIST_OMNIORB=	"@comment "
+PLIST_FNORB=	"@comment "
+.endif	# defined(WITH_CORBA)
+
+pre-fetch:
+.if !defined(BATCH) && !defined(WITH_CORBA)
+	@ ${CAT} files/corba.msg
+.endif
+
+post-configure:
+.if defined(WITH_CORBA)
+	@ ${PERL} -pi.orig -e \
+	  "/^orb_implementation/ && s/omniORB/${CORBA_ORBNAME}/" \
+	  ${CORBA_WRKSRC}/BioCorba/biocorbaconfig.py
+.endif
+
 do-build:
-	@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build)
+	@ cd ${WRKSRC} && ${PYTHON_CMD} setup.py build
+.if defined(WITH_CORBA)
+	@ cd ${CORBA_WRKSRC} && ${PYTHON_CMD} setup.py build
+.endif
 
 do-install:
-	@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py install)
+	@ cd ${WRKSRC} && ${PYTHON_CMD} setup.py install -c -O1 \
+	  --prefix=${PREFIX}
+.if defined(WITH_CORBA)
+	@ cd ${CORBA_WRKSRC} && ${PYTHON_CMD} setup.py install -c -O1 \
+	  --prefix=${PREFIX}
+.endif
+
+post-install:
+.if !defined(NOPORTDOCS)
+	@ ${MKDIR} ${DOCDIR}
+.for docfiles in *.txt *.tex *.py
+	@ ${INSTALL_DATA} ${WRKSRC}/Doc/${docfiles} ${DOCDIR}
+.endfor
+	@ ${MKDIR} ${EGDIR}
+	@ ${INSTALL_DATA} ${WRKSRC}/Doc/examples/*.py ${EGDIR}
+	@ cd ${WRKSRC} && find Scripts \
+	  | ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EGDIR}
+.if defined(WITH_CORBA)
+	@ ${MKDIR} ${DOCDIR}/BioCorba
+.for docfiles in *.tex *.pdf
+	@ ${INSTALL_DATA} ${CORBA_WRKSRC}/Doc/${docfiles} ${DOCDIR}/BioCorba
+.endfor
+	@ ${MKDIR} ${EGDIR}/BioCorba
+	@ cd ${CORBA_WRKSRC}/Doc/examples && find * \
+	  | ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EGDIR}/BioCorba
+	@ ${MKDIR} ${EGDIR}/BioCorba/Scripts
+	@ ${INSTALL_DATA} ${CORBA_WRKSRC}/Scripts/* ${EGDIR}/BioCorba/Scripts
+.endif	# defined(WITH_CORBA)
+.endif	# !defined(NOPORTDOCS)
 
 .include <bsd.port.mk>
diff --git a/biology/py-biopython/distinfo b/biology/py-biopython/distinfo
index 3f2f59443b92..a0b94229746a 100644
--- a/biology/py-biopython/distinfo
+++ b/biology/py-biopython/distinfo
@@ -1 +1,2 @@
-MD5 (biopython-0.90-d03.tar.gz) = 6eba4ef18fee09f47c127d44667a3d5c
+MD5 (biopython-1.00a1.tar.gz) = 054baa272e2885e17512964215817119
+MD5 (biopython-corba-0.2.1.tar.gz) = 3d6d3e4570ff2996bef84e08f6fabc25
diff --git a/biology/py-biopython/files/corba.msg b/biology/py-biopython/files/corba.msg
new file mode 100644
index 000000000000..df7961e5b5a4
--- /dev/null
+++ b/biology/py-biopython/files/corba.msg
@@ -0,0 +1,12 @@
+---------------------------------------------------------------------------
+Biopython is currently being built without CORBA support.  If you wish to
+enable the optional CORBA support, set the WITH_CORBA variable, e.g.:
+
+  make WITH_CORBA=yes install
+
+If you set WITH_CORBA, you may optionally also set the CORBA_ORB variable
+to "omniorb", "fnorb" or "orbit".  If you do not, "omniorb" is assumed as
+default.
+
+Further details are provided in the comments in this port's Makefile.
+---------------------------------------------------------------------------
diff --git a/biology/py-biopython/files/extra-patch-build_helper.py b/biology/py-biopython/files/extra-patch-build_helper.py
new file mode 100644
index 000000000000..777e20947f5d
--- /dev/null
+++ b/biology/py-biopython/files/extra-patch-build_helper.py
@@ -0,0 +1,24 @@
+Nasty, nasty workaround for an error which I can't quite explain.  This
+happens only if Fnorb is chosen as CORBA ORB.  Since CORBA support itself
+is optional in this port, this patch is added to EXTRA_PATCHES only if
+necessary.
+
+-- Johann Visagie <johann@egenetics.com>
+
+
+--- ../biopython-corba-0.2.1/build_helper.py.orig	Sun Apr 15 15:19:31 2001
++++ ../biopython-corba-0.2.1/build_helper.py	Thu Jun  7 16:25:05 2001
+@@ -125,7 +125,12 @@
+     # move the new file in place of the old
+     input_handle.close()
+     output_handle.close()
+-    os.rename(output_file, file)
++    input_handle = open(output_file, 'r')
++    output_handle = open(file, 'w')
++    S = input_handle.read()
++    output_handle.write(S)
++    input_handle.close()
++    output_handle.close()
+ 
+ def generate_orbit_stubs(idl_name, remove_old = 1):
+     """Move adapters to act as stubs and skeletons for ORBit.
diff --git a/biology/py-biopython/pkg-descr b/biology/py-biopython/pkg-descr
index 2216005d2351..c122f25cc2d3 100644
--- a/biology/py-biopython/pkg-descr
+++ b/biology/py-biopython/pkg-descr
@@ -1,12 +1,15 @@
-The Biopython Project is an international association of developers of freely
-available Python tools for use in areas of computational molecular biology
-such as bioinformatics and genomics.
+The Biopython Project is an international association of developers who are
+providing freely available Python tools for use in areas of computational
+molecular biology such as bioinformatics and genomics.
 
 Biopython is a collection of Python packages and modules created by the
 Biopython Project, intended to provide the basis for building bioinformatics
-applications in the Python language.  It is currently in developer's
-(pre-alpha) release.  Caveat emptor.
+applications in the Python language.
 
-WWW: http://www.biopython.org/
+Note that the current release is alpha quality, and not yet deemed to be
+stable.
+
+Authors: <biopython-dev@biopython.org>
+WWW:     http://biopython.org/
 
 -- Johann Visagie <johann@egenetics.com>
diff --git a/biology/py-biopython/pkg-plist b/biology/py-biopython/pkg-plist
index 3aa022327daa..0682a5f9fa13 100644
--- a/biology/py-biopython/pkg-plist
+++ b/biology/py-biopython/pkg-plist
@@ -1,143 +1,572 @@
-lib/%%PYTHON_VERSION%%/site-packages/Bio/__init__.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/ParserSupport.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/Seq.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/PropertyManager.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/File.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/Sequence.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/KeyWList.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/SProt.py
-lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/Generic.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/Generic.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/Generic.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_EnsemblPOA.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_EnsemblPOA.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_EnsemblPOA.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_GnomePOA.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_GnomePOA.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_GnomePOA.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_SeqcorePOA.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_SeqcorePOA.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_SeqcorePOA.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Ensembl.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Ensembl.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Ensembl.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_EnsemblPOA.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_EnsemblPOA.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_EnsemblPOA.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Gnome.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Gnome.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Gnome.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_GnomePOA.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_GnomePOA.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_GnomePOA.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Seqcore.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Seqcore.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Seqcore.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_SeqcorePOA.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_SeqcorePOA.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_SeqcorePOA.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Fasta/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Fasta/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Fasta/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/GenBank/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/GenBank/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/GenBank/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Seq.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Seq.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Seq.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqFeature.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqFeature.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqFeature.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqRecord.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqRecord.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqRecord.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/BiocorbaConnect.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/BiocorbaConnect.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/BiocorbaConnect.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Exon.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Exon.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Exon.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Gene.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Gene.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Gene.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Transcript.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Transcript.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Transcript.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Translation.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Translation.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Translation.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/VirtualContig.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/VirtualContig.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/VirtualContig.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/CorbaUnknown.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/CorbaUnknown.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/CorbaUnknown.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaAnonymousSeq.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaAnonymousSeq.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaAnonymousSeq.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaBioEnv.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaBioEnv.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaBioEnv.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaExceptions.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaExceptions.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaExceptions.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaPrimarySeq.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaPrimarySeq.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaPrimarySeq.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeq.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeq.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeq.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeqFeature.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeqFeature.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeqFeature.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaUpdatableSeqDB.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaUpdatableSeqDB.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaUpdatableSeqDB.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/GNOME/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/GNOME/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/GNOME/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/GNOME__POA/__init__.py
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/GNOME__POA/__init__.pyc
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/GNOME__POA/__init__.pyo
+%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Server/GnomeMemory/CorbaUnknown.py
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+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory
+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl
+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client
+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/GenBank
+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Fasta
+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio
+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters
+%%PLIST_CORBA%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba