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* biology/vsearch: Update to 2.15.0Jason W. Bacon2020-06-202-4/+4
* Move devel/swig30 to devel/swig and update to 4.0.1Sunpoet Po-Chuan Hsieh2020-06-181-4/+2
* biology/py-loompy: Update 2.0.17 -> 3.0.6Yuri Victorovich2020-06-162-5/+4
* biology/py-gffutils: Update 0.10 -> 0.10.1Yuri Victorovich2020-06-162-4/+4
* biology/seaview: Update version 5.0.2=>5.0.3Muhammad Moinur Rahman2020-06-142-4/+4
* Unbreak bulk -aAntoine Brodin2020-06-131-1/+1
* biology/picard-tools: CLI tools for manipulating sequencing dataJason W. Bacon2020-06-136-0/+170
* biology/py-biopython: Set python requirement to 3.6+Jason W. Bacon2020-06-131-1/+1
* biology/diamond: Update to version 0.9.34Joseph Mingrone2020-06-122-4/+4
* biology/py-pysam: Update 0.15.4 -> 0.16.0Yuri Victorovich2020-06-092-4/+4
* Add compiler:c++0x to USES to fix build on GCC-based systems:Mark Linimon2020-06-051-1/+1
* biology/bioawk: BWK awk modified for biological dataJason W. Bacon2020-06-055-0/+79
* biology/subread: Read alignment, quantification and mutation discoveryJason W. Bacon2020-06-0518-0/+367
* bioloty/vt: Discovers short variants from Next Generation Sequencing dataJason W. Bacon2020-06-059-0/+147
* biology/diamond: Update to version 0.9.33Joseph Mingrone2020-06-042-4/+4
* biology/hyphy: Update to version 2.5.14Joseph Mingrone2020-05-313-438/+438
* biology/iqtree: Update to version 2.0.6Joseph Mingrone2020-05-312-4/+4
* biology/abyss: Update 2.2.3 -> 2.2.4Yuri Victorovich2020-05-302-5/+4
* Clean up some thingsTobias Kortkamp2020-05-301-1/+2
* biology/py-biopython: Upgrade to 1.77Jason W. Bacon2020-05-292-9/+11
* biology/gatk: Update 4.1.5.0 -> 4.1.7.0Yuri Victorovich2020-05-282-6/+6
* biology/iqtree: Update to version 2.0.5Joseph Mingrone2020-05-282-7/+7
* Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 1).Alexey Dokuchaev2020-05-271-1/+1
* Mark as BROKEN on powerpc64 12. It builds on -head.Mark Linimon2020-05-261-1/+2
* biology/py-dnaio: Upgrade to 0.4.2Jason W. Bacon2020-05-242-4/+4
* biology/ugene: prepare for Qt5-5.15Tobias C. Berner2020-05-204-0/+40
* Mark as BROKEN on powerpc64:Mark Linimon2020-05-171-0/+2
* Bump PORTREVISION for security/nettle shlib changeSunpoet Po-Chuan Hsieh2020-05-162-1/+2
* New port: biology/py-hits: Utilities for processing high-throughput sequencin...Yuri Victorovich2020-05-164-0/+27
* biology/py-scikit-bio: Fix licenseYuri Victorovich2020-05-161-1/+1
* biology/py-scikit-bio: Remove bogus linesYuri Victorovich2020-05-161-5/+0
* New port: biology/py-scikit-bio: Data structures, algorithms, educational res...Yuri Victorovich2020-05-164-0/+44
* New port: biology/py-pandas-charm: Library for getting character matrices int...Yuri Victorovich2020-05-164-0/+31
* New port: biology/py-ete3: Framework for the analysis and visualization of treesYuri Victorovich2020-05-164-0/+43
* Add compiler:c++11-lang to USES to fix build on GCC-based systems:Mark Linimon2020-05-151-1/+1
* New port: biology/scrm: Coalescent simulator for biological sequencesYuri Victorovich2020-05-155-0/+45
* Update SphinxDanilo G. Baio2020-05-121-1/+1
* biology/hhsuite: fix build on powerpc64 elfv2Piotr Kubaj2020-05-121-1/+4
* - Resurrect and unbreak by updating to version 34.0Alexey Dokuchaev2020-05-1012-0/+1774
* Update devel/gmake to 4.3.Tijl Coosemans2020-05-101-0/+22
* Update to 7.6.13Mateusz Piotrowski2020-05-092-4/+4
* Bump 37 ports depending on math/openblas through USES=blaslapack:openblas bec...Yuri Victorovich2020-05-072-1/+2
* Bump 46 ports depending on math/openblas because the after the recent math/op...Yuri Victorovich2020-05-072-1/+2
* Preserve Gradle 6.2.2 for biology/gatkTobias Kortkamp2020-05-061-2/+2
* Remove expired ports:Rene Ladan2020-05-0535-2475/+0
* biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparserRene Ladan2020-05-051-3/+1
* biology/plink: Whole genome association analysis toolsetJason W. Bacon2020-05-056-0/+94
* - update libgd to 2.3.0Dirk Meyer2020-05-052-1/+2
* biology/hyphy: Update to version 2.5.12Joseph Mingrone2020-05-033-5/+5
* biology/iqtree: Update to version 2.0.4Joseph Mingrone2020-05-032-5/+7
* biology/hyphy: Update to version 2.5.10Joseph Mingrone2020-04-252-4/+4
* biology/diamond: Update to version 0.9.32Joseph Mingrone2020-04-252-5/+4
* - Swap back from net/openmpi3 to net/openmpiDanilo Egea Gondolfo2020-04-221-3/+3
* - Swap back from net/openmpi3 to net/openmpiDanilo Egea Gondolfo2020-04-221-3/+3
* Update to 7.6.9Mateusz Piotrowski2020-04-192-4/+4
* - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)Danilo Egea Gondolfo2020-04-191-3/+2
* Update to 7.6.8Mateusz Piotrowski2020-04-182-6/+5
* - Move OpenMPI support to net/openmpi3. OpenMPI 1 and 2 were deprecated.Danilo Egea Gondolfo2020-04-161-2/+3
* biology/gcta: Genome-wide Complex Trait AnalysisJason W. Bacon2020-04-159-0/+218
* Correct typo in pkg-message.Michael Gmelin2020-04-151-2/+2
* Improve startup script, join "Team FreeBSD" by defaultMichael Gmelin2020-04-153-11/+85
* biology/py-macs2: Upgrade to 2.2.7.1Jason W. Bacon2020-04-143-5/+29
* - Move OpenMPI support to net/openmpi3. OpenMPI 1 is deprecated.Danilo Egea Gondolfo2020-04-121-4/+4
* biology/fastp: Upgrade to 0.20.1Jason W. Bacon2020-04-103-8/+15
* biology/star: Upgrade to 2.7.3aJason W. Bacon2020-04-092-4/+4
* Deprecate ports broken for more than 6 monthsAntoine Brodin2020-04-055-0/+10
* biology/ngs-sdk: Update 2.10.4 -> 2.10.5Yuri Victorovich2020-04-054-12/+12
* Cosmetic changeSunpoet Po-Chuan Hsieh2020-04-021-2/+3
* Cosmetic changeSunpoet Po-Chuan Hsieh2020-04-021-2/+3
* kallisto: Patch for build with GCCJason W. Bacon2020-04-022-0/+11
* Update devel/tbb to 2020.2 and bump dependent port's revisionsGanael LAPLANCHE2020-04-011-0/+1
* Update WWWSunpoet Po-Chuan Hsieh2020-04-011-1/+1
* biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89Yuri Victorovich2020-03-313-17/+10
* Update WWWMateusz Piotrowski2020-03-302-2/+2
* biology/hyphy: Update to version 2.5.8Joseph Mingrone2020-03-283-5/+7
* Load appropriate Linuxulator bits automatically when starting serviceMateusz Piotrowski2020-03-232-1/+2
* Improve pkg-messageMateusz Piotrowski2020-03-231-6/+9
* biology/seaview: Update version 5.0=>5.0.2Muhammad Moinur Rahman2020-03-232-4/+4
* Resurrect biology/linux-foldingathomeMateusz Piotrowski2020-03-227-0/+214
* biology/diamond: Update to version 0.9.31.2Joseph Mingrone2020-03-222-4/+5
* biology/canu: Upgrade to 2.0Jason W. Bacon2020-03-213-9/+4
* biology/hyphy: Update to version 2.5.7Joseph Mingrone2020-03-202-4/+4
* Deprecate java/openjfx8-devel consumersTobias Kortkamp2020-03-191-0/+3
* biology/hyphy: Update to version 2.5.6Joseph Mingrone2020-03-183-5/+4
* Mark BROKEN: fails to buildAntoine Brodin2020-03-101-0/+2
* Drop dependency on devel/openmpJan Beich2020-03-093-7/+5
* Deprecate some ports using deprecated version of pythonAntoine Brodin2020-03-092-0/+6
* biology/ngs-sdk: Update 2.10.2 -> 2.10.4Yuri Victorovich2020-03-083-5/+5
* biology/jellyfish: Patch for clang 10Jason W. Bacon2020-03-083-3/+23
* Return theraven's ports to the pool after safekeeping his commit bit.Rene Ladan2020-03-061-1/+1
* biology/gatk: Update 4.1.4.1 -> 4.1.5.0Yuri Victorovich2020-03-043-18/+19
* biology/hyphy: Update to version 2.5.5Joseph Mingrone2020-03-023-15/+4
* biology/bowtie2: Upgrade to 2.4.1Jason W. Bacon2020-03-023-53/+30
* biology/mrbayes: Update to version 3.2.7Joseph Mingrone2020-03-016-39/+60
* Deprecate a few portsAntoine Brodin2020-02-233-0/+9
* biology/stringtie: fix build on GCC architecturesPiotr Kubaj2020-02-231-1/+1
* biology/hyphy: Update to version 2.5.4Joseph Mingrone2020-02-215-211/+45
* biology/vsearch: Upgrade to 2.14.2Jason W. Bacon2020-02-202-5/+5
* biology/stringtie: Update 1.3.4d -> 2.1.1Yuri Victorovich2020-02-175-97/+19
* biology/kallisto: Upgrade to 0.46.2Jason W. Bacon2020-02-162-6/+10
* biology/py-bx-python: Update 0.8.6 -> 0.8.8Yuri Victorovich2020-02-162-8/+8
* biology/py-macs2: Bump revision for previous run dep additionJason W. Bacon2020-02-091-0/+1
* biology/py-macs2: Add missing numpy run dependJason W. Bacon2020-02-091-0/+1
* biology/gatk: Change from gradle5 to gradle6Yuri Victorovich2020-02-092-6/+7
* Clean up MakefileSunpoet Po-Chuan Hsieh2020-02-091-1/+0
* biology/seaview: Update version 4.7=>5.0Muhammad Moinur Rahman2020-02-065-69/+4
* biology/diamond: Update to version 0.9.30Joseph Mingrone2020-02-032-4/+4
* Fix math/openblas and bump dependent portsSteve Wills2020-01-303-3/+3
* biology/hmmer: update to 3.3Fernando Apesteguía2020-01-294-9/+26
* biology/infernal: update to 1.1.3Fernando Apesteguía2020-01-285-22/+53
* Remove expired ports:Rene Ladan2020-01-2714-258/+0
* biology/py-pysam: Update 0.15.3 -> 0.15.4Yuri Victorovich2020-01-232-4/+4
* math/openblas: Update to 0.3.7Steve Wills2020-01-221-1/+1
* biology/gatk: Update 4.1.3.0 -> 4.1.4.1Yuri Victorovich2020-01-204-18/+18
* - Update WWWDmitry Marakasov2020-01-192-2/+2
* biology/abyss: Broken on i386Yuri Victorovich2020-01-191-0/+2
* biology/muscle: unbreak in -CURRENTFernando Apesteguía2020-01-181-0/+3
* biology/ngs-sdk: Update 2.10.1 -> 2.10.2Yuri Victorovich2020-01-173-5/+5
* biology/gemma: Unbreak buildJason W. Bacon2020-01-154-9/+44
* devel/jsoncpp: Update 1.8.1 -> 1.9.2Yuri Victorovich2020-01-141-0/+1
* biology/muscle: update to 3.8.1551Fernando Apesteguía2020-01-145-48/+44
* biology/tRNAscan-SE: update to 2.0.5Fernando Apesteguía2020-01-142-7/+7
* biology/abyss: Update 2.1.5 -> 2.2.3Yuri Victorovich2020-01-133-14/+8
* biology/ngs-sdk: Update 2.10.0 -> 2.10.1Yuri Victorovich2020-01-123-5/+5
* biology/py-macs2: Upgrade to 2.2.6Jason W. Bacon2020-01-112-14/+11
* Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over ...Sunpoet Po-Chuan Hsieh2020-01-091-2/+0
* Update to 1.7.5Sunpoet Po-Chuan Hsieh2020-01-093-8/+5
* Update *_DEPENDSSunpoet Po-Chuan Hsieh2020-01-091-2/+3
* biology/viennarna: Update 2.4.13 -> 2.4.14Yuri Victorovich2020-01-063-5/+8
* biology/gatk: Update 4.1.2.0-43 -> 4.1.3.0Yuri Victorovich2020-01-052-7/+6
* Mark a few ports broken (unfetchable)Antoine Brodin2020-01-051-0/+1
* biology/py-gffutils: Update 0.9 -> 0.10Yuri Victorovich2019-12-312-9/+8
* Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]Ganael LAPLANCHE2019-12-271-1/+1
* biology/ncbi-blast+: Upgrade to 2.10.0Jason W. Bacon2019-12-275-29/+49
* Deprecate a few portsAntoine Brodin2019-12-262-0/+6
* biology/bedtools: Upgrade to 2.29.2Jason W. Bacon2019-12-192-4/+4
* devel/boost-*: update to 1.72.0Jan Beich2019-12-1211-9/+11
* biology/bedtools: Upgrade to 2.29.1Jason W. Bacon2019-12-112-4/+4
* Update to 1.007007 (1.7.7)Sunpoet Po-Chuan Hsieh2019-12-093-7/+5
* Update *_DEPENDSSunpoet Po-Chuan Hsieh2019-12-091-2/+3
* Install Bio::SeqIO::entrezgeneSunpoet Po-Chuan Hsieh2019-12-092-5/+4
* Add p5-Bio-Variation 1.7.4Sunpoet Po-Chuan Hsieh2019-12-095-0/+64
* Add p5-Bio-DB-NCBIHelper 1.7.6Sunpoet Po-Chuan Hsieh2019-12-095-0/+64
* Add p5-Bio-DB-EMBL 1.7.4Sunpoet Po-Chuan Hsieh2019-12-095-0/+44
* biology/phyml: disable -march=nativePiotr Kubaj2019-12-061-1/+2
* biology/unanimity: Remove erroneous BROKENJason W. Bacon2019-11-281-2/+0
* Clean up after java/openjdk6 and java/openjdk6-jre removalJung-uk Kim2019-11-275-6/+2
* biology/py-multiqc: Upgrade to 1.8Jason W. Bacon2019-11-274-51/+9
* biology/p5-TrimGalore: Upgrade to 0.6.5Jason W. Bacon2019-11-272-4/+4
* biology/unanimity and dependencies: Flag as no longer open sourceJason W. Bacon2019-11-244-4/+12
* biology/py-cutadapt: Upgrade to 2.7Jason W. Bacon2019-11-232-8/+7
* biology/py-dnaio: Upgrade to 0.4.1Jason W. Bacon2019-11-232-4/+6
* biology/py-bx-python: Update 0.8.4 -> 0.8.6Yuri Victorovich2019-11-232-5/+4
* biology/paml: Update to version 4.9jJoseph Mingrone2019-11-222-6/+4
* biology/diamond: Update to v0.9.29Joseph Mingrone2019-11-212-4/+4
* Create devel/gradle5 in preparation of devel/gradle updateTobias Kortkamp2019-11-201-2/+2
* biology/haplohseq: Switch to distfile with example dataJason W. Bacon2019-11-178-9/+131
* biology/canu: Upgrade to 1.9Jason W. Bacon2019-11-084-127/+12
* - Limit python version (does not build with 3.7+)Dmitry Marakasov2019-11-081-1/+1
* a-b: Add missing USES={gnome,php,sdl,xorg}Tobias Kortkamp2019-11-082-2/+2
* Sprinkle more USES=xorgNiclas Zeising2019-11-081-1/+1
* biology/diamond: Update to version 0.9.28Joseph Mingrone2019-11-073-13/+4
* Mark a few ports BROKEN, unfetchableAntoine Brodin2019-11-068-0/+16
* biology/kallisto: Upgrade to 0.46.1Jason W. Bacon2019-11-062-5/+4
* Add USES=xorg USES=gl, ports categories bNiclas Zeising2019-11-059-9/+10
* biology/diamond: Update to version 0.9.27 (plus one fix)Joseph Mingrone2019-11-032-7/+5
* math/gsl: update to 2.6Tobias C. Berner2019-10-263-2/+5
* biology/avida: unbreak on powerpc64Piotr Kubaj2019-10-241-2/+1
* Remove expired ports:Rene Ladan2019-10-169-131/+0
* biology/prodigal: Eliminate a very old version from the portscout discovery p...Yuri Victorovich2019-10-121-0/+2
* biology/prodigal: Update 2.6.3-2 -> 2.6.3-7Yuri Victorovich2019-10-122-5/+8
* biology/star: Upgrade to 2.7.2dJason W. Bacon2019-10-072-6/+5
* biology/fastahack: Upgrade to 1.0.0Jason W. Bacon2019-10-072-7/+7
* biology/mothur: Update 1.42.3 -> 1.43.0Yuri Victorovich2019-10-062-6/+5
* biologi/ncbi-toolkit: Remove dependency on libXpNiclas Zeising2019-09-281-5/+4
* Deprecate x11/libXp, it is deprecated upstreamNiclas Zeising2019-09-281-1/+3
* biology/tophat: Fast splice junction mapper for RNA-Seq readsJason W. Bacon2019-09-279-0/+192
* Update devel/tbb to 2019.8 and bump dependent ports' revisionsGanael LAPLANCHE2019-09-251-0/+1
* biology/py-multiqc: Aggregate bioinformatics analysis reportsJason W. Bacon2019-09-246-0/+118
* devel/openmp: update to 9.0.0Jan Beich2019-09-223-3/+3
* biology/p5-TrimGalore: Upgrade to 0.6.4Jason W. Bacon2019-09-212-5/+5
* biology/fastqc: Upgrade to 0.11.8Jason W. Bacon2019-09-213-14/+12
* biology/diamond: Update to version 0.9.26Joseph Mingrone2019-09-192-4/+4
* Fix some misspelled or duplicated LICENSE_*Tobias Kortkamp2019-09-181-1/+1
* biology/haplohseq: Identify regions of allelic imbalanceJason W. Bacon2019-09-168-0/+185
* Deprecate a few portsAntoine Brodin2019-09-162-0/+4
* Drop C++11 workaround for GCC < 6 after r449590Jan Beich2019-09-152-36/+1
* biology/trimmomatic: Upgrade to 0.39Jason W. Bacon2019-09-144-4/+14
* biology/bedtools: Upgrade to 2.29.0Jason W. Bacon2019-09-135-49/+64
* biology/py-cutadapt: Upgrade to 2.5Jason W. Bacon2019-09-132-5/+6
* biology/phyml: update to 3.3.20190909Fernando Apesteguía2019-09-112-6/+6
* Update to 1.007006 (1.7.6)Sunpoet Po-Chuan Hsieh2019-09-083-19/+8
* Fix after gets(3) retirement using gets_s(3).Cy Schubert2019-09-021-1/+1
* Add a patch to remove use of gets(3)Li-Wen Hsu2019-09-022-0/+169
* biology/py-pysam: Update 0.15.2 -> 0.15.3Yuri Victorovich2019-08-312-4/+4
* biology/ngs-sdk: Update 2.9.6 -> 2.10.0Yuri Victorovich2019-08-314-13/+13
* biology/iqtree: Update to version 1.6.12Joseph Mingrone2019-08-272-5/+4
* biology/gperiodic: fix NLS and other rough edgesKurt Jaeger2019-08-232-30/+22
* devel/boost-*: update to 1.71.0Jan Beich2019-08-199-7/+9
* biology/checkm: Update 1.0.17 -> 1.0.18Yuri Victorovich2019-08-192-4/+4
* Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold2019-08-1413-32/+78
* biology/bolt-lmm: Upgrade to 2.3.4Jason W. Bacon2019-08-137-120/+63
* biology/checkm: Update 1.0.16 -> 1.0.17Yuri Victorovich2019-08-122-4/+4
* biology/gperiodic: upgrade 2.0.10 -> 3.0.3Kurt Jaeger2019-08-123-23/+39
* Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh2019-08-123-20/+5
* Update WWWSunpoet Po-Chuan Hsieh2019-08-111-1/+1
* biology/checkm: Update 1.0.13 -> 1.0.16Yuri Victorovich2019-08-092-5/+4
* biology/hhsuite: fix build on powerpc64Piotr Kubaj2019-08-051-2/+7
* PR: 239613Jason W. Bacon2019-08-056-1/+94
* biology/diamond: Update to version 0.9.25Joseph Mingrone2019-08-052-4/+4
* Mark BROKEN: unfetchableAntoine Brodin2019-08-043-0/+6
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-2750-32/+50
* biology/gatk: Update 4.0.11.0 -> 4.1.2.0-43Yuri Victorovich2019-07-272-12/+31
* - Update WWWDmitry Marakasov2019-07-251-1/+1
* Prepare for devel/gradle4 and java/openjfx8-devel updatesTobias Kortkamp2019-07-231-2/+2
* biology/treekin: fix build on GCC architecturesPiotr Kubaj2019-07-191-1/+2
* ncbi-blast+: Unbreak build with gcc8 following gcc9 patchJason W. Bacon2019-07-132-7/+9
* New port: biology/libbigwig: C library for handling bigWig files (containing ...Yuri Victorovich2019-07-125-0/+54
* ncbi-blast+: Fix build with gcc9Jason W. Bacon2019-07-111-0/+14
* Update security/nettle to 3.5.1Sunpoet Po-Chuan Hsieh2019-07-102-1/+2
* - Update WWWDmitry Marakasov2019-07-081-1/+1
* biology/mothur: Update 1.42.2 -> 1.42.3Yuri Victorovich2019-06-282-4/+4
* Mark this port as not buildable on powerpc64:Mark Linimon2019-06-251-0/+2
* biology/iqtree: Update to version 1.6.11Joseph Mingrone2019-06-252-4/+4
* biology/viennarna: Make it less/not prone to failures due to hardcoded C++ li...Yuri Victorovich2019-06-255-29/+15
* New port: biology/viennarna: Alignment tools for the structural analysis of RNAYuri Victorovich2019-06-249-0/+331
* Use USES=pathfixSunpoet Po-Chuan Hsieh2019-06-231-21/+14
* biology/abyss: fix build on big-endian architecturesPiotr Kubaj2019-06-213-2/+20
* Enable workaround for building on powerpc64.Mark Linimon2019-06-211-2/+8
* biology/mothur: Update 1.42.1-3 -> 1.42.2Yuri Victorovich2019-06-202-6/+5
* biology/py-bx-python: Update 0.8.2 -> 0.8.4Yuri Victorovich2019-06-192-5/+4
* New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich2019-06-164-0/+37
* biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.plJason W. Bacon2019-06-141-4/+10
* biology/ncbi-blast+: Upgrade to 2.9.0Jason W. Bacon2019-06-133-6/+78
* biology/kallisto: Upgrade to 0.46.0Jason W. Bacon2019-06-122-4/+4
* biology/tRNAscan-SE: Update to 2.0.3Steve Wills2019-06-083-15/+8
* biology/igv: Update 2.5.2 -> 2.5.3Yuri Victorovich2019-06-022-6/+6
* biology/tRNAscan-SE: fix build with GCC-based architectursPiotr Kubaj2019-05-301-1/+3
* biology/cufflinks: Fix build on i386 by removing the hard-coded -m64Yuri Victorovich2019-05-291-0/+16
* biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon2019-05-269-0/+228
* New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich2019-05-266-0/+80
* biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't ex...Yuri Victorovich2019-05-222-0/+36
* biology/fastp: Remove redundant USE_GCCJason W. Bacon2019-05-211-8/+1
* biology/mothur: Add USES=compiler:c++11-langYuri Victorovich2019-05-211-1/+1
* New port: biology/mothur: Software for bioinformatics of the microbial ecolog...Yuri Victorovich2019-05-214-0/+41
* - Update to 3.3.20190321Wen Heping2019-05-202-5/+4
* - Update to 5.18.0Wen Heping2019-05-203-29/+22
* New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich2019-05-198-0/+128
* biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCCJason W. Bacon2019-05-191-9/+3
* biology/gemma: Genome-wide Efficient Mixed Model AssociationJason W. Bacon2019-05-178-0/+431
generated by cgit (git 2.34.1) at 2025-02-21 09:18:24 +0800