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* Use RUBY_MOD*.knu2002-10-072-31/+31
* - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)wjv2002-09-272-9/+7
* add forgotten "USE_REINPLACE=yes"ijliao2002-09-211-0/+1
* upgrade to 20020426ijliao2002-09-216-22/+16
* BROKEN: Does not fetchkris2002-09-211-0/+2
* BROKEN: Does not buildkris2002-09-191-0/+2
* add primer3 0.9ijliao2002-09-176-0/+437
* Flip is used to find/translate orfs.dinoex2002-09-106-0/+33
* "Wise2 is package that is focused on comparing DNA sequences atdinoex2002-09-107-0/+185
* Chase new name of wxgtk shared library.sobomax2002-09-091-1/+1
* Remove USE_NEWGCC, which is no longer supported or required.kris2002-08-311-1/+0
* Deploy USE_GNOMENG infrastructurelioux2002-08-302-2/+4
* o Fix examples directory path which is changed in last revision.perky2002-08-261-1/+5
* o Fix RUN_DEPENDS path (PMW -> Pmw)perky2002-08-252-4/+33
* Prefer <limits.h> over <values.h> as the latter has been removed fromkris2002-08-234-0/+44
* o Remove redundant dependency on py-tkinter.perky2002-08-221-1/+1
* Add a dependecy to x11-toolkits/pmwperky2002-08-221-1/+2
* New port L-Breeder version 1.0: Allows you to display and breedlioux2002-08-219-0/+96
* - Support CXXFLAGS properly.naddy2002-08-183-7/+22
* Update to version 3.6.a3.naddy2002-08-143-22/+7
* Add pymol 0.82, Free and Open-Source molecular modeling system.perky2002-08-138-0/+715
* Update to 0.3.9.knu2002-08-033-2/+3
* add libgenome 0.5.0ijliao2002-07-306-0/+381
* upgrade to 4.4ijliao2002-07-168-16/+97
* Use $PYNUMERIC in the dependencies.tg2002-07-151-2/+2
* - Add patch that will, for -CURRENT only, change: -pthread -> -lc_rwjv2002-07-112-0/+23
* Update to 0.3.8.knu2002-07-083-6/+29
* - Update to version 2.4.1wjv2002-07-054-111/+183
* Bump XForms lib. version.mikeh2002-07-041-1/+1
* Unbreak this port:glewis2002-06-162-586/+585
* Correct MASTER_SITES.petef2002-06-081-1/+1
* Note distribution term.sada2002-05-271-8/+6
* Back my last commit out.sada2002-05-232-2/+2
* distfile has silently changed,sada2002-05-182-1/+2
* BROKEN: Checksum is incorrectkris2002-05-181-0/+2
* BROKEN: incorrect checksumskris2002-05-171-0/+2
* Update to sim4-2002.03.03 to unbreak build.kris2002-05-052-3/+3
* upgrade to V110-1ijliao2002-04-212-4/+3
* add avida 1.6.0ijliao2002-04-2011-0/+146
* Update to 0.3.6.knu2002-04-112-4/+3
* Swiss-PdbViewer is an application that provides a user friendly interfacedinoex2002-04-038-0/+388
* Remove #include <malloc.h>kris2002-03-311-0/+4
* change master siteijliao2002-03-293-10/+32
* Respect CFLAGS/CC.petef2002-03-291-0/+21
* Add crimap 2.4, a tool for the creation of multilocus linkage maps.wjv2002-03-276-0/+59
* Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.wjv2002-03-277-0/+102
* - Add a new patchwjv2002-03-272-1/+11
* Add USE_SUBMAKE, where it might be necessary.sobomax2002-03-251-0/+1
* BROKEN: Does not buildkris2002-03-251-0/+2
* - Fix certain mistakes in FreeBSD patcheswjv2002-03-228-70/+320
* Update to 0.3.5.knu2002-03-133-3/+13
* Fix WWW.dannyboy2002-03-091-1/+1
* Update to 2001.12.20pat2002-02-226-18/+88
* Pass maintainership to submitter and add a backup master site.petef2002-02-201-2/+3
* - Install documentationpat2002-02-134-6/+19
* Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;knu2002-01-291-4/+4
* Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.wjv2002-01-259-0/+438
* - Update to version of 2001-12-30wjv2002-01-252-2/+2
* - Update to version 1.82wjv2002-01-254-13/+28
* - Update to version 0.7.2, somewhat overdue. :-)wjv2002-01-252-27/+53
* o update to 3.7.sf2002-01-242-34/+7
* o update to 0.7.sf2002-01-242-2/+2
* update to 1.3.3.sf2002-01-232-2/+2
* - Update to version 1.00a4wjv2002-01-223-10/+261
* Update to 0.99.7. Use new DATADIR macro. Install documentation,trevor2002-01-204-24/+55
* Upgrade tinker to the latest revisionijliao2002-01-195-64/+101
* - Update to version 2.2.0wjv2002-01-183-15/+335
* Update to 0.2.petef2001-12-294-19/+8
* Initial import of artemis 4.0kevlo2001-12-226-0/+1529
* Update to 0.3.3.knu2001-12-223-2/+3
* Add gff2ps 0.97b, converts gff-formated genomic data-sets topetef2001-12-196-0/+42
* Add dna-qc 1993.07.26, a quality control algorithm for DNApetef2001-12-197-0/+94
* Update to version 2001.10.12.steve2001-12-172-2/+2
* fix pkg-plistijliao2001-12-091-0/+1
* * Replace pkg-message about setting BABEL_DIR with a wrapper scriptnaddy2001-12-028-26/+55
* - update to 1.3.2petef2001-11-292-7/+4
* Update to 0.3.2.knu2001-11-283-4/+21
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-211-1/+1
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...lioux2001-11-212-2/+2
* chase checksum for repacked distfile almost an year ago.sf2001-11-063-2/+3
* Add ruby-bio (BioRuby), an integrated environment for Bioinformaticsknu2001-10-246-0/+91
* update WWW and master siteijliao2001-10-222-2/+10
* Remove a redundant trailing space.knu2001-10-211-1/+1
* - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0wjv2001-10-025-263/+210
* Add nclever 4.0, a character-based version of NCBI's Entrez program.wjv2001-09-268-0/+105
* - Add NO_LATEST_LINK, which should've been there in the first place. :-(wjv2001-09-201-0/+1
* - Add installation of include fileswjv2001-09-194-134/+445
* style fix: un"echo" commandslioux2001-09-131-40/+40
* Update to 3.9lioux2001-09-1312-116/+161
* Bump png majorache2001-09-111-1/+1
* Fix a buglet with the use of XFREE86_VERSION without includingtobez2001-09-071-1/+3
* Make biology/rasmol work at all color depths.tobez2001-09-074-8/+91
* - Update to version 1.00.a3wjv2001-09-064-105/+167
* - Update to version 3.1wjv2001-08-294-6/+18
* - Update to version 1.0.3wjv2001-08-292-3/+3
* - Update to version 1.2.4wjv2001-08-222-2/+2
* - Update port to version 2.2gwjv2001-08-224-223/+34
* Add seqio 1.2.2, a set of C functions which can read/writewjv2001-08-2210-0/+400
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenwjv2001-08-225-43/+30
* - Move the (very) long list of manpages from the port Makefile to a separatewjv2001-08-202-123/+240
* Update to 0.95.trevor2001-08-204-27/+30
* Remove a patch turd from the pkg-plistkris2001-08-201-1/+0
* Add treeviewx 0.1.1, a phylogenetic tree viewer.wjv2001-08-179-0/+82
* Add p5-bioperl-devel 0.9.0,wjv2001-08-148-0/+566
* Update to version 1.75wjv2001-08-134-14/+27
* - Properly list run-time dependencies in RUN_DEPENDS in Makefile.wjv2001-08-133-40/+46
* upgrade to 0.26ijliao2001-08-105-32/+30
* Add lamarc 2001.08.06,wjv2001-08-075-0/+42
* Add recombine 1.40, a program to fit population models across sites.wjv2001-08-067-0/+166
* Add fluctuate 1.30, a program to fit population models.wjv2001-08-067-0/+89
* Add coalesce 1.50, a program to fit population models.wjv2001-08-067-0/+73
* Correct my email address.wjv2001-08-061-1/+1
* Add migrate 1.2,wjv2001-08-066-0/+63
* Update maintainer's email address.wjv2001-08-061-1/+1
* - Update port to version 2.0.1wjv2001-08-035-24/+110
* add USE_XLIBlioux2001-07-311-0/+2
* This port require bison to build so add USE_BISON.steve2001-07-261-0/+1
* Remove obsolete pointer to online documentation.wjv2001-07-111-4/+2
* Update package's URL; my email address.wjv2001-07-112-3/+3
* Update Tony Maher's email address.fenner2001-07-111-1/+1
* ${PREFIX}/share/${PORTNAME} --> ${DATADIR}sobomax2001-07-101-2/+2
* Update to version 1.00.a2wjv2001-07-096-8/+46
* Add NOPORTDOCS support to pkg-plistijliao2001-07-0911-1381/+1380
* Update to version 1.3.0wjv2001-07-062-3/+3
* - General clean-up of port.wjv2001-07-055-38/+252
* - Update to version 0.7.1wjv2001-07-044-3/+24
* - Add %%PORTDOCS%% support to pkg-plist.wjv2001-07-042-3/+3
* Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogenywjv2001-07-047-0/+64
* Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportwjv2001-07-042-107/+107
* Add %%PORTDOCS%% suppor to pkg-plist.wjv2001-07-032-12/+12
* Add support for %%PORTDOCS%%.wjv2001-07-031-42/+42
* Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.wjv2001-07-032-2/+2
* Update to version 3.04wjv2001-07-033-5/+5
* Update to version 1.82wjv2001-07-032-3/+2
* Use $FILESDIR rather than hard-coded path.wjv2001-06-291-1/+1
* Updating my email address in my remaining ports.wjv2001-06-273-3/+3
* Embarrassingly long overdue update to 0.7.0, including optional support forwjv2001-06-263-66/+300
* Update to version 2001.04.03; add installation of some documentation.wjv2001-06-205-30/+86
* Update to 1.00.a1; change MAINTAINER to my new address.wjv2001-06-156-124/+691
* Update to 1.13.3; remove bogus file.wjv2001-06-154-71/+9
* - Update to version 1.2.6akevlo2001-06-124-8/+9
* Distfile was moved and renamed.markp2001-06-112-3/+3
* Use proper POSIX syntax for `chown'.obrien2001-06-011-1/+1
* Update to version 1.13.1kevlo2001-05-305-42/+240
* math/numpy was renamed to math/py-numeric.sobomax2001-05-291-1/+1
* upgrade to 4.3.2ijliao2001-05-2714-458/+389
* Update the EMBOSS suite (biology/emboss) to version 1.12.0jeh2001-05-073-138/+25
* Updata biology/fasta3 to version 33.t08.d4jeh2001-05-073-8/+8
* Update distfile checksum (PORTREVISION bumped)olgeni2001-04-205-37/+14
* activate IGNOREFILES.sf2001-04-141-0/+3
* Ignore checksum. The distfile changes day by day.sf2001-04-131-1/+1
* This port require X libraries to build/run.steve2001-04-111-0/+1
* Overhaul QT/KDE support:will2001-04-031-2/+1
* update to 3.03mharo2001-04-024-27/+5
* updated port biology/phylip from vers 3.5 to 3.6mharo2001-04-025-94/+110
* - Update MASTER_SITES and WWW: linekevlo2001-03-314-32/+21
* Update to 33.t08.d3.sobomax2001-03-223-4/+3
* - Upgrade to version 1.70kevlo2001-03-135-18/+41
* Upgrade to 0.4.kuriyama2001-03-134-12/+12
* o update to 2.7.2.sf2001-03-132-5/+5
* pass maintainership to ports@.sf2001-03-131-1/+1
* Update to lastest versionkevlo2001-03-122-2/+3
* Update the EMBOSS suite to v1.11.0nbm2001-03-123-7/+12
* - A small bugfix lead to a rerelease without a version number change.nbm2001-03-122-1/+2
* Update to 0.85.trevor2001-03-122-2/+2
* Force -O0 on the Alpha.trevor2001-03-121-1/+7
* fix WWW:sf2001-03-091-1/+1
* update to 33.t08.d2.sf2001-03-082-2/+2
* gd.2, not gd.1ijliao2001-03-051-1/+1
* Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.roam2001-03-052-3/+3
* Remove do-configure section, use PERL_CONFIGURE now.vanilla2001-03-011-1/+0
* Update to version 1.10.1kevlo2001-02-283-8/+7
* reimport biology/genpakijliao2001-02-288-0/+164
* module name conflict with print/gp, so remove it and I'll reimport it againijliao2001-02-288-163/+0
* add gpijliao2001-02-288-0/+163
* Update to version 1.10.0kevlo2001-02-205-24/+51
* The author (at my request) has gone back to a more FreeBSD-friendlytrevor2001-02-202-2/+1
* Update to 0.84.trevor2001-02-193-15/+14
* Update to version 2001-02-06jeh2001-02-192-2/+2
* Chase graphics/gd's shlib version bump.knu2001-02-121-1/+2
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andjeh2001-02-129-0/+204
* New port: biology/fasta, the FASTA2 suite of DNA and protein sequencejeh2001-02-128-0/+151
* add gaussian98, an ab-initio molecular orbital calculation program.sf2001-02-1112-0/+822
* Update to 0.84a. Generate the plist.trevor2001-02-093-8/+10
* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1kevlo2001-01-2910-77/+118
* update from 3.7 to 3.8ijliao2001-01-2518-167/+706
* Upgrade to version 1.9.0kevlo2001-01-246-13/+47
* Massive style enforcement - use ^I instead of spaces for variables identation.sobomax2001-01-171-2/+2
* Clean up inefficient perl invocations; use multiple REs in the same call.will2001-01-081-2/+2
* Update to 1.2.6kevlo2000-12-234-7/+25
* Remove trailing period and package name from the pkg-comment.demon2000-12-191-1/+1
* Update to version 5.79.steve2000-12-113-26/+42
* Update distfiles' checksums after the distfiles have been rerolled yetroam2000-12-042-4/+5
* Distfile tarballs were rerolled without notice due to a minor bug.roam2000-12-011-4/+4
* - Update port biology/emboss from 1.7.0 to 1.8.0jeh2000-11-284-17/+124
* Make nolonger support :U. Fix to compensate for that.jeh2000-11-191-3/+6
* They made changes to the "blast" program.jeh2000-11-152-2/+3
* - This is a fairly extensive rework of this port.jeh2000-11-133-0/+56
* - This is a fairly extensive rework of this port.jeh2000-11-134-5/+150
* Change motif to a normal dependency. REQUIRES_MOTIF is now calledasami2000-11-081-1/+1
* Yes. They did re-roll this version, it is legit.jeh2000-11-032-2/+2
* Updated to new version. That is the pits, the day after it becomesjeh2000-11-024-4/+3
* Make portlint happy, remove a spacejeh2000-11-011-1/+1
* Update to version 1.7.0jeh2000-11-013-2/+11
* File missing in pkg-plistjeh2000-10-301-0/+1
* New Port: biology/ncbi-toolkitjeh2000-10-2911-0/+376
* Update biology/sim4 to 2000.10.19jeh2000-10-263-5/+7
* gmake is neededjeh2000-10-241-0/+1
* Update to version 0.6.2jeh2000-10-133-174/+132
* A file was added to distfile and then repackaged with the same name.jeh2000-10-133-2/+5
* Initial import of fastDNAml Version 1.2.2jeh2000-10-126-0/+93
* Missing " in post-patch targetjeh2000-10-111-1/+1
* PR 21608 was not processed as intented.jeh2000-10-112-21/+22
* Initial import of biology/biojavajeh2000-10-106-0/+661
* - Update to 1.6.0kevlo2000-10-103-363/+372
* - Update biology/p5-AcePerl from 1.62 to 1.67kevlo2000-10-106-61/+88
* Initiail version of nab (4.2)jeh2000-10-1017-0/+666
* This is nab (nucleic acid builder), a language for macromoleculesjeh2000-10-101-0/+1
* - Fix MASTER_SITES/DISTNAMEjeh2000-10-103-20/+19
* The last commit changes the ports and therefore need a PORTREVISION bumpjeh2000-10-102-0/+2
* Support PREFIX properlyjeh2000-10-102-1/+5
* - Fix MASTER_SITESjeh2000-10-104-18/+36
* Add do-install target to port's Makefile. Remove patch sectiontrevor2000-10-092-10/+5
* Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} isasami2000-10-081-1/+1
* Rename ${FILESDIR}/patch-* to ${PATCHDIR}/extra-patch-*.asami2000-10-081-2/+2
* Implement USE_GTK, part 1.reg2000-10-053-38/+26
* - Support CC/CFLAGS/PREFIX properlyjeh2000-10-036-8/+127
* Correct and sort PLISTs.reg2000-10-032-6/+6
* Change MAINTAINER for my ports.trevor2000-10-021-1/+1
* Add USE_XLIBkris2000-09-221-0/+1
* respect CXX and CXXFLAGS (Kato Tsuguru)ade2000-09-194-20/+39
* Update to 0.90.d03nbm2000-09-113-132/+152
* Fix checksumkevlo2000-09-091-18/+1
* Don't break package building on Satoshi's cluster. Explicitly dependtg2000-09-081-1/+1
* Upgrade to 1.5.0nbm2000-09-084-66/+113
* Update to emboss 1.4.0.nbm2000-09-074-52/+83
* Update to version 2000.08.24kevlo2000-09-044-7/+23
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.sobomax2000-08-211-1/+0
* Update to emboss 1.1.0, fixing some style bugs too.nbm2000-08-135-6/+321
* Upgrade to 0.90.d02.will2000-08-062-3/+3
* Fix MASTER_SITESjedgar2000-08-021-1/+1
* Add emboss, the European Molecular Biology Open Software Suitenbm2000-08-016-0/+700
* Add py-biopython, is a collection of Python packages and modules creatednbm2000-07-316-0/+166
* Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsnbm2000-07-287-0/+259
* Add p5-AcePerl, a perl interface to the ACEDB genome database systemnbm2000-07-289-0/+177
* Add sim4, an implementation of the sim4 algorithm for aligning expressednbm2000-07-277-0/+48
* Add xdrawchem 0.82 - a program for drawing moleculesalex2000-07-197-0/+65
* Activating the chemeq, clustalw, paml, and phylip ports.steve2000-07-101-0/+4
* Adding phylip version 3.5.steve2000-07-105-0/+161
* Add paml version 3.01.steve2000-07-107-0/+89
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