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* add avida 1.6.0Ying-Chieh Liao2002-04-2011-0/+146
* Update to 0.3.6.Akinori MUSHA2002-04-112-4/+3
* Swiss-PdbViewer is an application that provides a user friendly interfaceDirk Meyer2002-04-038-0/+388
* Remove #include <malloc.h>Kris Kennaway2002-03-311-0/+4
* change master siteYing-Chieh Liao2002-03-293-10/+32
* Respect CFLAGS/CC.Pete Fritchman2002-03-291-0/+21
* Add crimap 2.4, a tool for the creation of multilocus linkage maps.Johann Visagie2002-03-276-0/+59
* Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.Johann Visagie2002-03-277-0/+102
* - Add a new patchJohann Visagie2002-03-272-1/+11
* Add USE_SUBMAKE, where it might be necessary.Maxim Sobolev2002-03-251-0/+1
* BROKEN: Does not buildKris Kennaway2002-03-251-0/+2
* - Fix certain mistakes in FreeBSD patchesJohann Visagie2002-03-228-70/+320
* Update to 0.3.5.Akinori MUSHA2002-03-133-3/+13
* Fix WWW.Daniel Harris2002-03-091-1/+1
* Update to 2001.12.20Patrick Li2002-02-226-18/+88
* Pass maintainership to submitter and add a backup master site.Pete Fritchman2002-02-201-2/+3
* - Install documentationPatrick Li2002-02-134-6/+19
* Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;Akinori MUSHA2002-01-291-4/+4
* Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.Johann Visagie2002-01-259-0/+438
* - Update to version of 2001-12-30Johann Visagie2002-01-252-2/+2
* - Update to version 1.82Johann Visagie2002-01-254-13/+28
* - Update to version 0.7.2, somewhat overdue. :-)Johann Visagie2002-01-252-27/+53
* o update to 3.7.FUJISHIMA Satsuki2002-01-242-34/+7
* o update to 0.7.FUJISHIMA Satsuki2002-01-242-2/+2
* update to 1.3.3.FUJISHIMA Satsuki2002-01-232-2/+2
* - Update to version 1.00a4Johann Visagie2002-01-223-10/+261
* Update to 0.99.7. Use new DATADIR macro. Install documentation,Trevor Johnson2002-01-204-24/+55
* Upgrade tinker to the latest revisionYing-Chieh Liao2002-01-195-64/+101
* - Update to version 2.2.0Johann Visagie2002-01-183-15/+335
* Update to 0.2.Pete Fritchman2001-12-294-19/+8
* Initial import of artemis 4.0Kevin Lo2001-12-226-0/+1529
* Update to 0.3.3.Akinori MUSHA2001-12-223-2/+3
* Add gff2ps 0.97b, converts gff-formated genomic data-sets toPete Fritchman2001-12-196-0/+42
* Add dna-qc 1993.07.26, a quality control algorithm for DNAPete Fritchman2001-12-197-0/+94
* Update to version 2001.10.12.Steve Price2001-12-172-2/+2
* fix pkg-plistYing-Chieh Liao2001-12-091-0/+1
* * Replace pkg-message about setting BABEL_DIR with a wrapper scriptChristian Weisgerber2001-12-028-26/+55
* - update to 1.3.2Pete Fritchman2001-11-292-7/+4
* Update to 0.3.2.Akinori MUSHA2001-11-283-4/+21
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...Mario Sergio Fujikawa Ferreira2001-11-211-1/+1
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ...Mario Sergio Fujikawa Ferreira2001-11-212-2/+2
* chase checksum for repacked distfile almost an year ago.FUJISHIMA Satsuki2001-11-063-2/+3
* Add ruby-bio (BioRuby), an integrated environment for BioinformaticsAkinori MUSHA2001-10-246-0/+91
* update WWW and master siteYing-Chieh Liao2001-10-222-2/+10
* Remove a redundant trailing space.Akinori MUSHA2001-10-211-1/+1
* - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0Johann Visagie2001-10-025-263/+210
* Add nclever 4.0, a character-based version of NCBI's Entrez program.Johann Visagie2001-09-268-0/+105
* - Add NO_LATEST_LINK, which should've been there in the first place. :-(Johann Visagie2001-09-201-0/+1
* - Add installation of include filesJohann Visagie2001-09-194-134/+445
* style fix: un"echo" commandsMario Sergio Fujikawa Ferreira2001-09-131-40/+40
* Update to 3.9Mario Sergio Fujikawa Ferreira2001-09-1312-116/+161
* Bump png majorAndrey A. Chernov2001-09-111-1/+1
* Fix a buglet with the use of XFREE86_VERSION without includingAnton Berezin2001-09-071-1/+3
* Make biology/rasmol work at all color depths.Anton Berezin2001-09-074-8/+91
* - Update to version 1.00.a3Johann Visagie2001-09-064-105/+167
* - Update to version 3.1Johann Visagie2001-08-294-6/+18
* - Update to version 1.0.3Johann Visagie2001-08-292-3/+3
* - Update to version 1.2.4Johann Visagie2001-08-222-2/+2
* - Update port to version 2.2gJohann Visagie2001-08-224-223/+34
* Add seqio 1.2.2, a set of C functions which can read/writeJohann Visagie2001-08-2210-0/+400
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenJohann Visagie2001-08-225-43/+30
* - Move the (very) long list of manpages from the port Makefile to a separateJohann Visagie2001-08-202-123/+240
* Update to 0.95.Trevor Johnson2001-08-204-27/+30
* Remove a patch turd from the pkg-plistKris Kennaway2001-08-201-1/+0
* Add treeviewx 0.1.1, a phylogenetic tree viewer.Johann Visagie2001-08-179-0/+82
* Add p5-bioperl-devel 0.9.0,Johann Visagie2001-08-148-0/+566
* Update to version 1.75Johann Visagie2001-08-134-14/+27
* - Properly list run-time dependencies in RUN_DEPENDS in Makefile.Johann Visagie2001-08-133-40/+46
* upgrade to 0.26Ying-Chieh Liao2001-08-105-32/+30
* Add lamarc 2001.08.06,Johann Visagie2001-08-075-0/+42
* Add recombine 1.40, a program to fit population models across sites.Johann Visagie2001-08-067-0/+166
* Add fluctuate 1.30, a program to fit population models.Johann Visagie2001-08-067-0/+89
* Add coalesce 1.50, a program to fit population models.Johann Visagie2001-08-067-0/+73
* Correct my email address.Johann Visagie2001-08-061-1/+1
* Add migrate 1.2,Johann Visagie2001-08-066-0/+63
* Update maintainer's email address.Johann Visagie2001-08-061-1/+1
* - Update port to version 2.0.1Johann Visagie2001-08-035-24/+110
* add USE_XLIBMario Sergio Fujikawa Ferreira2001-07-311-0/+2
* This port require bison to build so add USE_BISON.Steve Price2001-07-261-0/+1
* Remove obsolete pointer to online documentation.Johann Visagie2001-07-111-4/+2
* Update package's URL; my email address.Johann Visagie2001-07-112-3/+3
* Update Tony Maher's email address.Bill Fenner2001-07-111-1/+1
* ${PREFIX}/share/${PORTNAME} --> ${DATADIR}Maxim Sobolev2001-07-101-2/+2
* Update to version 1.00.a2Johann Visagie2001-07-096-8/+46
* Add NOPORTDOCS support to pkg-plistYing-Chieh Liao2001-07-0911-1381/+1380
* Update to version 1.3.0Johann Visagie2001-07-062-3/+3
* - General clean-up of port.Johann Visagie2001-07-055-38/+252
* - Update to version 0.7.1Johann Visagie2001-07-044-3/+24
* - Add %%PORTDOCS%% support to pkg-plist.Johann Visagie2001-07-042-3/+3
* Add grappa 1.0.2, Genome Rearrangements Analysis and PhylogenyJohann Visagie2001-07-047-0/+64
* Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportJohann Visagie2001-07-042-107/+107
* Add %%PORTDOCS%% suppor to pkg-plist.Johann Visagie2001-07-032-12/+12
* Add support for %%PORTDOCS%%.Johann Visagie2001-07-031-42/+42
* Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.Johann Visagie2001-07-032-2/+2
* Update to version 3.04Johann Visagie2001-07-033-5/+5
* Update to version 1.82Johann Visagie2001-07-032-3/+2
* Use $FILESDIR rather than hard-coded path.Johann Visagie2001-06-291-1/+1
* Updating my email address in my remaining ports.Johann Visagie2001-06-273-3/+3
* Embarrassingly long overdue update to 0.7.0, including optional support forJohann Visagie2001-06-263-66/+300
* Update to version 2001.04.03; add installation of some documentation.Johann Visagie2001-06-205-30/+86
* Update to 1.00.a1; change MAINTAINER to my new address.Johann Visagie2001-06-156-124/+691
* Update to 1.13.3; remove bogus file.Johann Visagie2001-06-154-71/+9
* - Update to version 1.2.6aKevin Lo2001-06-124-8/+9
* Distfile was moved and renamed.Mark Pulford2001-06-112-3/+3
* Use proper POSIX syntax for `chown'.David E. O'Brien2001-06-011-1/+1
* Update to version 1.13.1Kevin Lo2001-05-305-42/+240
* math/numpy was renamed to math/py-numeric.Maxim Sobolev2001-05-291-1/+1
* upgrade to 4.3.2Ying-Chieh Liao2001-05-2714-458/+389
* Update the EMBOSS suite (biology/emboss) to version 1.12.0James E. Housley2001-05-073-138/+25
* Updata biology/fasta3 to version 33.t08.d4James E. Housley2001-05-073-8/+8
* Update distfile checksum (PORTREVISION bumped)Jimmy Olgeni2001-04-205-37/+14
* activate IGNOREFILES.FUJISHIMA Satsuki2001-04-141-0/+3
* Ignore checksum. The distfile changes day by day.FUJISHIMA Satsuki2001-04-131-1/+1
* This port require X libraries to build/run.Steve Price2001-04-111-0/+1
* Overhaul QT/KDE support:Will Andrews2001-04-031-2/+1
* update to 3.03Michael Haro2001-04-024-27/+5
* updated port biology/phylip from vers 3.5 to 3.6Michael Haro2001-04-025-94/+110
* - Update MASTER_SITES and WWW: lineKevin Lo2001-03-314-32/+21
* Update to 33.t08.d3.Maxim Sobolev2001-03-223-4/+3
* - Upgrade to version 1.70Kevin Lo2001-03-135-18/+41
* Upgrade to 0.4.Jun Kuriyama2001-03-134-12/+12
* o update to 2.7.2.FUJISHIMA Satsuki2001-03-132-5/+5
* pass maintainership to ports@.FUJISHIMA Satsuki2001-03-131-1/+1
* Update to lastest versionKevin Lo2001-03-122-2/+3
* Update the EMBOSS suite to v1.11.0Neil Blakey-Milner2001-03-123-7/+12
* - A small bugfix lead to a rerelease without a version number change.Neil Blakey-Milner2001-03-122-1/+2
* Update to 0.85.Trevor Johnson2001-03-122-2/+2
* Force -O0 on the Alpha.Trevor Johnson2001-03-121-1/+7
* fix WWW:FUJISHIMA Satsuki2001-03-091-1/+1
* update to 33.t08.d2.FUJISHIMA Satsuki2001-03-082-2/+2
* gd.2, not gd.1Ying-Chieh Liao2001-03-051-1/+1
* Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.Peter Pentchev2001-03-052-3/+3
* Remove do-configure section, use PERL_CONFIGURE now.Vanilla I. Shu2001-03-011-1/+0
* Update to version 1.10.1Kevin Lo2001-02-283-8/+7
* reimport biology/genpakYing-Chieh Liao2001-02-288-0/+164
* module name conflict with print/gp, so remove it and I'll reimport it againYing-Chieh Liao2001-02-288-163/+0
* add gpYing-Chieh Liao2001-02-288-0/+163
* Update to version 1.10.0Kevin Lo2001-02-205-24/+51
* The author (at my request) has gone back to a more FreeBSD-friendlyTrevor Johnson2001-02-202-2/+1
* Update to 0.84.Trevor Johnson2001-02-193-15/+14
* Update to version 2001-02-06James E. Housley2001-02-192-2/+2
* Chase graphics/gd's shlib version bump.Akinori MUSHA2001-02-121-1/+2
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andJames E. Housley2001-02-129-0/+204
* New port: biology/fasta, the FASTA2 suite of DNA and protein sequenceJames E. Housley2001-02-128-0/+151
* add gaussian98, an ab-initio molecular orbital calculation program.FUJISHIMA Satsuki2001-02-1112-0/+822
* Update to 0.84a. Generate the plist.Trevor Johnson2001-02-093-8/+10
* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1Kevin Lo2001-01-2910-77/+118
* update from 3.7 to 3.8Ying-Chieh Liao2001-01-2518-167/+706
* Upgrade to version 1.9.0Kevin Lo2001-01-246-13/+47
* Massive style enforcement - use ^I instead of spaces for variables identation.Maxim Sobolev2001-01-171-2/+2
* Clean up inefficient perl invocations; use multiple REs in the same call.Will Andrews2001-01-081-2/+2
* Update to 1.2.6Kevin Lo2000-12-234-7/+25
* Remove trailing period and package name from the pkg-comment.Dmitry Sivachenko2000-12-191-1/+1
* Update to version 5.79.Steve Price2000-12-113-26/+42
* Update distfiles' checksums after the distfiles have been rerolled yetPeter Pentchev2000-12-042-4/+5
* Distfile tarballs were rerolled without notice due to a minor bug.Peter Pentchev2000-12-011-4/+4
* - Update port biology/emboss from 1.7.0 to 1.8.0James E. Housley2000-11-284-17/+124
* Make nolonger support :U. Fix to compensate for that.James E. Housley2000-11-191-3/+6
* They made changes to the "blast" program.James E. Housley2000-11-152-2/+3
* - This is a fairly extensive rework of this port.James E. Housley2000-11-133-0/+56
* - This is a fairly extensive rework of this port.James E. Housley2000-11-134-5/+150
* Change motif to a normal dependency. REQUIRES_MOTIF is now calledSatoshi Asami2000-11-081-1/+1
* Yes. They did re-roll this version, it is legit.James E. Housley2000-11-032-2/+2
* Updated to new version. That is the pits, the day after it becomesJames E. Housley2000-11-024-4/+3
* Make portlint happy, remove a spaceJames E. Housley2000-11-011-1/+1
* Update to version 1.7.0James E. Housley2000-11-013-2/+11
* File missing in pkg-plistJames E. Housley2000-10-301-0/+1
* New Port: biology/ncbi-toolkitJames E. Housley2000-10-2911-0/+376
* Update biology/sim4 to 2000.10.19James E. Housley2000-10-263-5/+7
* gmake is neededJames E. Housley2000-10-241-0/+1
* Update to version 0.6.2James E. Housley2000-10-133-174/+132
* A file was added to distfile and then repackaged with the same name.James E. Housley2000-10-133-2/+5
* Initial import of fastDNAml Version 1.2.2James E. Housley2000-10-126-0/+93
* Missing " in post-patch targetJames E. Housley2000-10-111-1/+1
* PR 21608 was not processed as intented.James E. Housley2000-10-112-21/+22
* Initial import of biology/biojavaJames E. Housley2000-10-106-0/+661
* - Update to 1.6.0Kevin Lo2000-10-103-363/+372
* - Update biology/p5-AcePerl from 1.62 to 1.67Kevin Lo2000-10-106-61/+88
* Initiail version of nab (4.2)James E. Housley2000-10-1017-0/+666
* This is nab (nucleic acid builder), a language for macromoleculesJames E. Housley2000-10-101-0/+1
* - Fix MASTER_SITES/DISTNAMEJames E. Housley2000-10-103-20/+19
* The last commit changes the ports and therefore need a PORTREVISION bumpJames E. Housley2000-10-102-0/+2
* Support PREFIX properlyJames E. Housley2000-10-102-1/+5
* - Fix MASTER_SITESJames E. Housley2000-10-104-18/+36
* Add do-install target to port's Makefile. Remove patch sectionTrevor Johnson2000-10-092-10/+5
* Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} isSatoshi Asami2000-10-081-1/+1
* Rename ${FILESDIR}/patch-* to ${PATCHDIR}/extra-patch-*.Satoshi Asami2000-10-081-2/+2
* Implement USE_GTK, part 1.Jeremy Lea2000-10-053-38/+26
* - Support CC/CFLAGS/PREFIX properlyJames E. Housley2000-10-036-8/+127
* Correct and sort PLISTs.Jeremy Lea2000-10-032-6/+6
* Change MAINTAINER for my ports.Trevor Johnson2000-10-021-1/+1
* Add USE_XLIBKris Kennaway2000-09-221-0/+1
* respect CXX and CXXFLAGS (Kato Tsuguru)Ade Lovett2000-09-194-20/+39
* Update to 0.90.d03Neil Blakey-Milner2000-09-113-132/+152
* Fix checksumKevin Lo2000-09-091-18/+1
* Don't break package building on Satoshi's cluster. Explicitly dependThomas Gellekum2000-09-081-1/+1
* Upgrade to 1.5.0Neil Blakey-Milner2000-09-084-66/+113
* Update to emboss 1.4.0.Neil Blakey-Milner2000-09-074-52/+83
* Update to version 2000.08.24Kevin Lo2000-09-044-7/+23
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.Maxim Sobolev2000-08-211-1/+0
* Update to emboss 1.1.0, fixing some style bugs too.Neil Blakey-Milner2000-08-135-6/+321
* Upgrade to 0.90.d02.Will Andrews2000-08-062-3/+3
* Fix MASTER_SITESChris D. Faulhaber2000-08-021-1/+1
* Add emboss, the European Molecular Biology Open Software SuiteNeil Blakey-Milner2000-08-016-0/+700
* Add py-biopython, is a collection of Python packages and modules createdNeil Blakey-Milner2000-07-316-0/+166
* Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsNeil Blakey-Milner2000-07-287-0/+259
* Add p5-AcePerl, a perl interface to the ACEDB genome database systemNeil Blakey-Milner2000-07-289-0/+177
* Add sim4, an implementation of the sim4 algorithm for aligning expressedNeil Blakey-Milner2000-07-277-0/+48
* Add xdrawchem 0.82 - a program for drawing moleculesAlexander Langer2000-07-197-0/+65
* Activating the chemeq, clustalw, paml, and phylip ports.Steve Price2000-07-101-0/+4
* Adding phylip version 3.5.Steve Price2000-07-105-0/+161
* Add paml version 3.01.Steve Price2000-07-107-0/+89
* Adding clustalw version 1.81.Steve Price2000-07-106-0/+66
* Adding chemeq version 1.10.Steve Price2000-07-105-0/+62
* - Use GTK_CONFIG/GLIB_CONFIG instead of hardcoded gtk12-config/glib12-configSteve Price2000-07-082-19/+27
* Unbreak by extracting the correct distfileKris Kennaway2000-07-031-8/+2
* ...local-distfiles... -> MASTER_SITE_LOCALAlexander Langer2000-06-201-1/+2
* fc is ftn77 now, adjust accordingly.Alexander Langer2000-06-123-5/+6
* Update to version 1.0.3Alexander Langer2000-06-114-24/+23
* Clean up this port so that it installs stuff in a more proper locationWill Andrews2000-06-093-138/+138
* Update to the latest version as of 5 June.Akinori MUSHA2000-06-084-15/+26
* Fix build for 4.0 and later. Make DESCR shorter.Will Andrews2000-06-085-165/+181
* Update to 3.6.Will Andrews2000-06-086-114/+145
* Convert to usable F77 binary, especially on 4.0 and newer.Will Andrews2000-06-084-82/+73
* Fix MD5 checksum. Since I was unable to find an older version of theWill Andrews2000-06-051-1/+1
* Fix this port after the recent PORT{NAME,VERSION} changes. portlint(1)Steve Price2000-05-281-2/+4
* Update to version 2000.04.26.Steve Price2000-05-283-5/+3
* Chase the checksum (lots of code changes)Kris Kennaway2000-04-241-1/+1
* WRKSRC-related fixes.Satoshi Asami2000-04-161-0/+1
* update with the new PORTNAME/PORTVERSION variablesMichael Haro2000-04-0915-53/+51
* Remove andy@icc.surw.chel.su as maintainer from his ports..he doesn'tKris Kennaway2000-03-291-1/+1
* Add virtual category "linux" to Linux apps and support libs/utils.Satoshi Asami2000-02-281-1/+1
* Chase the checksum (minor source changes)Kris Kennaway2000-02-271-1/+1
* update URLsMichael Haro2000-02-241-2/+2
* update WWWMichael Haro2000-02-241-1/+1
* Forgot to remove this lineChris Piazza2000-02-071-1/+0
* Don't strip things we don't know how to stripChris Piazza2000-01-311-1/+1
* fix some pkg/MESSAGE stuffMichael Haro2000-01-302-2/+2
* Update to ver 1.2.2Chris Piazza2000-01-152-3/+3
* Bump glib12 's share library version to 3,Vanilla I. Shu1999-10-102-10/+2
* f77(1) on the Alpha doesn't grok '-malign-double' so only use it on theSteve Price1999-09-271-0/+4
* Enforce random pkg/COMMENT rules, including the one that states EmacsTim Vanderhoek1999-09-182-2/+2
* Grammar and WWW: fix.Tim Vanderhoek1999-09-181-7/+6
* Update to new version.Steve Price1999-09-183-8/+5
* Compile-errorSatoshi Taoka1999-09-102-3/+9
* Compile errorSatoshi Taoka1999-09-091-1/+1
* Added gperiodic and xmolwtSatoshi Taoka1999-09-071-0/+2
* Displays a periodic table of the elements.Satoshi Taoka1999-09-075-0/+58
* This program calculate formula weight and percent of each elements.Satoshi Taoka1999-09-076-0/+82
* Distfile changed on the MASTER_SITE. I have no idea if thisChris Piazza1999-08-312-6/+6
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